CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 147 & Codon = Aac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1147D147ND147NnonsynGacAac7447441704-706

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1147D147NGacAac744744All0.000142
ORF1ab/nsp1147D147NGacAac8888AY.260.002491
ORF1ab/nsp1147D147NGacAac7171B.1.3510.002111
ORF1ab/nsp1147D147NGacAac5555B.1.1.70.000049
ORF1ab/nsp1147D147NGacAac4242AY.50.000867
ORF1ab/nsp1147D147NGacAac4141B.1.20.000361
ORF1ab/nsp1147D147NGacAac3838B.1.4040.049479
ORF1ab/nsp1147D147NGacAac3535AY.30.000348
ORF1ab/nsp1147D147NGacAac3333B.10.000302
ORF1ab/nsp1147D147NGacAac2828B.1.2190.264151
ORF1ab/nsp1147D147NGacAac2828B.1.617.20.000105
ORF1ab/nsp1147D147NGacAac2020AY.1030.000124
ORF1ab/nsp1147D147NGacAac1818B.1.10.000327
ORF1ab/nsp1147D147NGacAac1818P.1.160.006734
ORF1ab/nsp1147D147NGacAac1717AY.40.000026
ORF1ab/nsp1147D147NGacAac1616B.1.1.3980.051613
ORF1ab/nsp1147D147NGacAac1515AY.440.000091
ORF1ab/nsp1147D147NGacAac1313B.1.4290.000306
ORF1ab/nsp1147D147NGacAac1111B.1.6210.000974
ORF1ab/nsp1147D147NGacAac1010B.1.2340.001319
ORF1ab/nsp1147D147NGacAac99B.1.1770.000119
ORF1ab/nsp1147D147NGacAac88AY.470.000249
ORF1ab/nsp1147D147NGacAac88P.1.140.000382
ORF1ab/nsp1147D147NGacAac77AY.430.000031
ORF1ab/nsp1147D147NGacAac77B.1.36.80.007
ORF1ab/nsp1147D147NGacAac77P.10.00011
ORF1ab/nsp1147D147NGacAac44B.1.2580.000266
ORF1ab/nsp1147D147NGacAac44B.1.258.170.000416
ORF1ab/nsp1147D147NGacAac33AY.1190.000106
ORF1ab/nsp1147D147NGacAac33AY.250.000018
ORF1ab/nsp1147D147NGacAac33AY.270.000194
ORF1ab/nsp1147D147NGacAac33AY.290.000047
ORF1ab/nsp1147D147NGacAac33AY.460.000312
ORF1ab/nsp1147D147NGacAac33AY.910.002191
ORF1ab/nsp1147D147NGacAac33B0.000383
ORF1ab/nsp1147D147NGacAac33B.1.5750.00091
ORF1ab/nsp1147D147NGacAac33B.1.6280.001057
ORF1ab/nsp1147D147NGacAac33C.360.002732
ORF1ab/nsp1147D147NGacAac33Q.10.000379
ORF1ab/nsp1147D147NGacAac33R.10.00027
ORF1ab/nsp1147D147NGacAac22AY.1020.000053
ORF1ab/nsp1147D147NGacAac22AY.3.10.000171
ORF1ab/nsp1147D147NGacAac22AY.4.2.10.000298
ORF1ab/nsp1147D147NGacAac22AY.750.000112
ORF1ab/nsp1147D147NGacAac22B.1.1.370.000386
ORF1ab/nsp1147D147NGacAac22B.1.1.5190.000079
ORF1ab/nsp1147D147NGacAac22B.1.177.730.001133
ORF1ab/nsp1147D147NGacAac22B.1.258.40.006897
ORF1ab/nsp1147D147NGacAac22B.1.6190.001742
ORF1ab/nsp1147D147NGacAac22B.1.6250.004706
ORF1ab/nsp1147D147NGacAac11A.23.10.000704
ORF1ab/nsp1147D147NGacAac11AY.1210.000135
ORF1ab/nsp1147D147NGacAac11AY.140.000088
ORF1ab/nsp1147D147NGacAac11AY.330.000067
ORF1ab/nsp1147D147NGacAac11AY.340.000097
ORF1ab/nsp1147D147NGacAac11AY.360.000148
ORF1ab/nsp1147D147NGacAac11AY.4.20.000022
ORF1ab/nsp1147D147NGacAac11AY.450.000122
ORF1ab/nsp1147D147NGacAac11AY.46.40.000165
ORF1ab/nsp1147D147NGacAac11AY.46.60.000072
ORF1ab/nsp1147D147NGacAac11AY.60.000041
ORF1ab/nsp1147D147NGacAac11AY.650.000533
ORF1ab/nsp1147D147NGacAac11AY.9.20.000037
ORF1ab/nsp1147D147NGacAac11AY.98.10.000048
ORF1ab/nsp1147D147NGacAac11AY.99.20.000092
ORF1ab/nsp1147D147NGacAac11B.1.1.1530.001095
ORF1ab/nsp1147D147NGacAac11B.1.1600.000031
ORF1ab/nsp1147D147NGacAac11B.1.177.870.000728
ORF1ab/nsp1147D147NGacAac11B.1.2210.000071
ORF1ab/nsp1147D147NGacAac11B.1.2320.000537
ORF1ab/nsp1147D147NGacAac11B.1.2400.000216
ORF1ab/nsp1147D147NGacAac11B.1.2430.00007
ORF1ab/nsp1147D147NGacAac11B.1.2650.001271
ORF1ab/nsp1147D147NGacAac11B.1.4000.000429
ORF1ab/nsp1147D147NGacAac11B.1.4270.00005
ORF1ab/nsp1147D147NGacAac11B.1.4320.011236
ORF1ab/nsp1147D147NGacAac11B.1.5030.002488
ORF1ab/nsp1147D147NGacAac11B.1.5640.000426
ORF1ab/nsp1147D147NGacAac11B.1.5960.000087
ORF1ab/nsp1147D147NGacAac11B.1.6200.000946
ORF1ab/nsp1147D147NGacAac11B.1.621.10.000506
ORF1ab/nsp1147D147NGacAac11C.370.000116
ORF1ab/nsp1147D147NGacAac11D.20.000075
ORF1ab/nsp1147D147NGacAac11P.1.100.000269
ORF1ab/nsp1147D147NGacAac11P.1.170.000162
ORF1ab/nsp1147D147NGacAac11Q.40.000455
ORF1ab/nsp1147D147NGacAac11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.