CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 147

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	147	D147D	D147D	syn	gaC	gaT	2482	2482	1	704-706
ORF1ab/nsp1	147	D147G	D147G	nonsyn	gAc	gGc	1657	1470	0.887145	704-706
ORF1ab/nsp1	147	D147G	D147G	nonsyn	gAC	gGG	1657	79	0.0476765	704-706
ORF1ab/nsp1	147	D147G	D147G	nonsyn	gAC	gGA	1657	65	0.0392275	704-706
ORF1ab/nsp1	147	D147G	D147G	nonsyn	gAC	gGT	1657	43	0.0259505	704-706
ORF1ab/nsp1	147	D147N	D147N	nonsyn	Gac	Aac	744	744	1	704-706
ORF1ab/nsp1	147	D147Y	D147Y	nonsyn	Gac	Tac	712	711	0.998595	704-706
ORF1ab/nsp1	147	D147Y	D147Y	nonsyn	GaC	TaT	712	1	0.00140449	704-706
ORF1ab/nsp1	147	D147A	D147A	nonsyn	gAc	gCc	191	136	0.712042	704-706
ORF1ab/nsp1	147	D147A	D147A	nonsyn	gAC	gCG	191	34	0.17801	704-706
ORF1ab/nsp1	147	D147A	D147A	nonsyn	gAC	gCT	191	15	0.078534	704-706
ORF1ab/nsp1	147	D147A	D147A	nonsyn	gAC	gCA	191	6	0.0314136	704-706
ORF1ab/nsp1	147	D147E	D147E	nonsyn	gaC	gaA	155	103	0.664516	704-706
ORF1ab/nsp1	147	D147E	D147E	nonsyn	gaC	gaG	155	52	0.335484	704-706
ORF1ab/nsp1	147	D147V	D147V	nonsyn	gAc	gTc	80	38	0.475	704-706
ORF1ab/nsp1	147	D147V	D147V	nonsyn	gAC	gTG	80	19	0.2375	704-706
ORF1ab/nsp1	147	D147V	D147V	nonsyn	gAC	gTA	80	13	0.1625	704-706
ORF1ab/nsp1	147	D147V	D147V	nonsyn	gAC	gTT	80	10	0.125	704-706
ORF1ab/nsp1	147	D147del	D147del	del	GAC	---	43	43	1	704-706
ORF1ab/nsp1	147	D147H	D147H	nonsyn	Gac	Cac	12	11	0.916667	704-706
ORF1ab/nsp1	147	D147H	D147H	nonsyn	GaC	CaT	12	1	0.0833333	704-706
ORF1ab/nsp1	147	D147del1	D147del1	del	gAc	g-c	5	3	0.6	704-706
ORF1ab/nsp1	147	D147del1	D147del1	del	gAC	gG-	5	1	0.2	704-706
ORF1ab/nsp1	147	D147del1	D147del1	del	gAC	g-T	5	1	0.2	704-706
ORF1ab/nsp1	147	D147L	D147L	nonsyn	GAc	CTc	2	1	0.5	704-706
ORF1ab/nsp1	147	D147L	D147L	nonsyn	GAC	CTT	2	1	0.5	704-706
ORF1ab/nsp1	147	D147F	D147F	nonsyn	GAC	TTT	2	1	0.5	704-706
ORF1ab/nsp1	147	D147F	D147F	nonsyn	GAc	TTc	2	1	0.5	704-706
ORF1ab/nsp1	147	D147del2	D147del2	del	gAC	g--	1	1	1	704-706

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	147	D147D	gaC	gaT	2482	2482	All	0.000475
ORF1ab/nsp1	147	D147G	gAc	gGc	1470	1657	All	0.000281
ORF1ab/nsp1	147	D147G	gAC	gGG	79	1657	All	0.000015
ORF1ab/nsp1	147	D147G	gAC	gGA	65	1657	All	0.000012
ORF1ab/nsp1	147	D147G	gAC	gGT	43	1657	All	0.000008
ORF1ab/nsp1	147	D147D	gaC	gaT	1192	1192	B.1.1.7	0.001067
ORF1ab/nsp1	147	D147N	Gac	Aac	744	744	All	0.000142
ORF1ab/nsp1	147	D147Y	Gac	Tac	711	712	All	0.000136
ORF1ab/nsp1	147	D147Y	GaC	TaT	1	712	All	0
ORF1ab/nsp1	147	D147G	gAc	gGc	684	686	B.1.361	0.881443
ORF1ab/nsp1	147	D147G	gAC	gGG	2	686	B.1.361	0.002577
ORF1ab/nsp1	147	D147Y	Gac	Tac	326	326	B.1.1.284	0.035012
ORF1ab/nsp1	147	D147G	gAc	gGc	231	297	B.1	0.002116
ORF1ab/nsp1	147	D147G	gAC	gGA	32	297	B.1	0.000293
ORF1ab/nsp1	147	D147G	gAC	gGG	18	297	B.1	0.000165
ORF1ab/nsp1	147	D147G	gAC	gGT	16	297	B.1	0.000147
ORF1ab/nsp1	147	D147D	gaC	gaT	207	207	AY.44	0.00126
ORF1ab/nsp1	147	D147A	gAc	gCc	136	191	All	0.000026
ORF1ab/nsp1	147	D147A	gAC	gCG	34	191	All	0.000007
ORF1ab/nsp1	147	D147A	gAC	gCT	15	191	All	0.000003
ORF1ab/nsp1	147	D147A	gAC	gCA	6	191	All	0.000001
ORF1ab/nsp1	147	D147E	gaC	gaA	103	155	All	0.00002
ORF1ab/nsp1	147	D147E	gaC	gaG	52	155	All	0.00001
ORF1ab/nsp1	147	D147G	gAc	gGc	102	155	B.1.1.7	0.000091
ORF1ab/nsp1	147	D147G	gAC	gGG	34	155	B.1.1.7	0.00003
ORF1ab/nsp1	147	D147G	gAC	gGT	14	155	B.1.1.7	0.000013
ORF1ab/nsp1	147	D147G	gAC	gGA	5	155	B.1.1.7	0.000004
ORF1ab/nsp1	147	D147A	gAc	gCc	52	104	B.1.1.7	0.000047
ORF1ab/nsp1	147	D147A	gAC	gCG	32	104	B.1.1.7	0.000029
ORF1ab/nsp1	147	D147A	gAC	gCT	14	104	B.1.1.7	0.000013
ORF1ab/nsp1	147	D147A	gAC	gCA	6	104	B.1.1.7	0.000005
ORF1ab/nsp1	147	D147Y	Gac	Tac	98	99	B.1.617.2	0.000369
ORF1ab/nsp1	147	D147Y	GaC	TaT	1	99	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147D	gaC	gaT	94	94	AY.4	0.000146
ORF1ab/nsp1	147	D147N	Gac	Aac	88	88	AY.26	0.002491
ORF1ab/nsp1	147	D147V	gAc	gTc	38	80	All	0.000007
ORF1ab/nsp1	147	D147V	gAC	gTG	19	80	All	0.000004
ORF1ab/nsp1	147	D147V	gAC	gTA	13	80	All	0.000002
ORF1ab/nsp1	147	D147V	gAC	gTT	10	80	All	0.000002
ORF1ab/nsp1	147	D147D	gaC	gaT	74	74	B.1.617.2	0.000279
ORF1ab/nsp1	147	D147N	Gac	Aac	71	71	B.1.351	0.002111
ORF1ab/nsp1	147	D147D	gaC	gaT	69	69	B.1.160	0.002152
ORF1ab/nsp1	147	D147D	gaC	gaT	69	69	B.1.2	0.000608
ORF1ab/nsp1	147	D147G	gAc	gGc	64	65	B.1.2	0.000564
ORF1ab/nsp1	147	D147G	gAC	gGG	1	65	B.1.2	0.000009
ORF1ab/nsp1	147	D147Y	Gac	Tac	55	55	AY.4	0.000086
ORF1ab/nsp1	147	D147N	Gac	Aac	55	55	B.1.1.7	0.000049
ORF1ab/nsp1	147	D147Y	Gac	Tac	54	54	AY.43	0.000239
ORF1ab/nsp1	147	D147D	gaC	gaT	53	53	B.1	0.000485
ORF1ab/nsp1	147	D147E	gaC	gaA	35	53	B.1	0.000321
ORF1ab/nsp1	147	D147E	gaC	gaG	18	53	B.1	0.000165
ORF1ab/nsp1	147	D147D	gaC	gaT	46	46	AY.25	0.000277
ORF1ab/nsp1	147	D147D	gaC	gaT	46	46	B.1.526	0.001081
ORF1ab/nsp1	147	D147G	gAc	gGc	34	45	B.1.177	0.000448
ORF1ab/nsp1	147	D147G	gAC	gGA	5	45	B.1.177	0.000066
ORF1ab/nsp1	147	D147G	gAC	gGT	3	45	B.1.177	0.00004
ORF1ab/nsp1	147	D147G	gAC	gGG	3	45	B.1.177	0.00004
ORF1ab/nsp1	147	D147del	GAC	---	43	43	All	0.000008
ORF1ab/nsp1	147	D147N	Gac	Aac	42	42	AY.5	0.000867
ORF1ab/nsp1	147	D147G	gAc	gGc	34	41	B.1.1	0.000617
ORF1ab/nsp1	147	D147G	gAC	gGA	3	41	B.1.1	0.000054
ORF1ab/nsp1	147	D147G	gAC	gGG	3	41	B.1.1	0.000054
ORF1ab/nsp1	147	D147G	gAC	gGT	1	41	B.1.1	0.000018
ORF1ab/nsp1	147	D147N	Gac	Aac	41	41	B.1.2	0.000361
ORF1ab/nsp1	147	D147N	Gac	Aac	38	38	B.1.404	0.049479
ORF1ab/nsp1	147	D147D	gaC	gaT	36	36	B.1.1.284	0.003866
ORF1ab/nsp1	147	D147N	Gac	Aac	35	35	AY.3	0.000348
ORF1ab/nsp1	147	D147D	gaC	gaT	35	35	B.1.177	0.000461
ORF1ab/nsp1	147	D147N	Gac	Aac	33	33	B.1	0.000302
ORF1ab/nsp1	147	D147D	gaC	gaT	32	32	AY.43	0.000142
ORF1ab/nsp1	147	D147G	gAc	gGc	30	30	AY.102	0.000795
ORF1ab/nsp1	147	D147V	gAc	gTc	10	29	B.1	0.000092
ORF1ab/nsp1	147	D147V	gAC	gTA	8	29	B.1	0.000073
ORF1ab/nsp1	147	D147V	gAC	gTT	6	29	B.1	0.000055
ORF1ab/nsp1	147	D147V	gAC	gTG	5	29	B.1	0.000046
ORF1ab/nsp1	147	D147V	gAc	gTc	13	28	B.1.1.7	0.000012
ORF1ab/nsp1	147	D147V	gAC	gTG	11	28	B.1.1.7	0.00001
ORF1ab/nsp1	147	D147V	gAC	gTA	2	28	B.1.1.7	0.000002
ORF1ab/nsp1	147	D147V	gAC	gTT	2	28	B.1.1.7	0.000002
ORF1ab/nsp1	147	D147N	Gac	Aac	28	28	B.1.219	0.264151
ORF1ab/nsp1	147	D147N	Gac	Aac	28	28	B.1.617.2	0.000105
ORF1ab/nsp1	147	D147Y	Gac	Tac	28	28	R.1	0.00252
ORF1ab/nsp1	147	D147A	gAc	gCc	26	26	AY.4	0.00004
ORF1ab/nsp1	147	D147Y	Gac	Tac	26	26	B.1.1.7	0.000023
ORF1ab/nsp1	147	D147D	gaC	gaT	26	26	B.1.525	0.002942
ORF1ab/nsp1	147	D147D	gaC	gaT	24	24	AY.103	0.000149
ORF1ab/nsp1	147	D147E	gaC	gaA	12	22	B.1.1.7	0.000011
ORF1ab/nsp1	147	D147E	gaC	gaG	10	22	B.1.1.7	0.000009
ORF1ab/nsp1	147	D147G	gAc	gGc	14	22	B.1.258	0.000932
ORF1ab/nsp1	147	D147G	gAC	gGG	3	22	B.1.258	0.0002
ORF1ab/nsp1	147	D147G	gAC	gGA	3	22	B.1.258	0.0002
ORF1ab/nsp1	147	D147G	gAC	gGT	2	22	B.1.258	0.000133
ORF1ab/nsp1	147	D147N	Gac	Aac	20	20	AY.103	0.000124
ORF1ab/nsp1	147	D147G	gAc	gGc	19	20	B.1.526	0.000447
ORF1ab/nsp1	147	D147G	gAC	gGA	1	20	B.1.526	0.000024
ORF1ab/nsp1	147	D147G	gAc	gGc	19	19	B.1.617.2	0.000072
ORF1ab/nsp1	147	D147D	gaC	gaT	18	18	AY.117	0.001521
ORF1ab/nsp1	147	D147Y	Gac	Tac	18	18	AY.25	0.000108
ORF1ab/nsp1	147	D147N	Gac	Aac	18	18	B.1.1	0.000327
ORF1ab/nsp1	147	D147N	Gac	Aac	18	18	P.1.16	0.006734
ORF1ab/nsp1	147	D147N	Gac	Aac	17	17	AY.4	0.000026
ORF1ab/nsp1	147	D147A	gAc	gCc	17	17	AY.44	0.000103
ORF1ab/nsp1	147	D147G	gAc	gGc	13	17	B.1.160	0.000405
ORF1ab/nsp1	147	D147G	gAC	gGT	2	17	B.1.160	0.000062
ORF1ab/nsp1	147	D147G	gAC	gGG	1	17	B.1.160	0.000031
ORF1ab/nsp1	147	D147G	gAC	gGA	1	17	B.1.160	0.000031
ORF1ab/nsp1	147	D147D	gaC	gaT	17	17	B.1.429	0.0004
ORF1ab/nsp1	147	D147G	gAc	gGc	16	16	AY.4	0.000025
ORF1ab/nsp1	147	D147D	gaC	gaT	16	16	AY.4.2	0.000347
ORF1ab/nsp1	147	D147Y	Gac	Tac	16	16	AY.44	0.000097
ORF1ab/nsp1	147	D147N	Gac	Aac	16	16	B.1.1.398	0.051613
ORF1ab/nsp1	147	D147G	gAc	gGc	14	16	B.1.177.44	0.007265
ORF1ab/nsp1	147	D147G	gAC	gGA	2	16	B.1.177.44	0.001038
ORF1ab/nsp1	147	D147N	Gac	Aac	15	15	AY.44	0.000091
ORF1ab/nsp1	147	D147Y	Gac	Tac	13	13	AY.3	0.000129
ORF1ab/nsp1	147	D147Y	Gac	Tac	13	13	B.1	0.000119
ORF1ab/nsp1	147	D147G	gAc	gGc	10	13	B.1.221	0.00071
ORF1ab/nsp1	147	D147G	gAC	gGG	2	13	B.1.221	0.000142
ORF1ab/nsp1	147	D147G	gAC	gGA	1	13	B.1.221	0.000071
ORF1ab/nsp1	147	D147N	Gac	Aac	13	13	B.1.429	0.000306
ORF1ab/nsp1	147	D147H	Gac	Cac	11	12	All	0.000002
ORF1ab/nsp1	147	D147H	GaC	CaT	1	12	All	0
ORF1ab/nsp1	147	D147D	gaC	gaT	12	12	AY.9.2	0.000441
ORF1ab/nsp1	147	D147G	gAc	gGc	7	12	B.1.1.385	0.03125
ORF1ab/nsp1	147	D147G	gAC	gGA	2	12	B.1.1.385	0.008929
ORF1ab/nsp1	147	D147G	gAC	gGT	2	12	B.1.1.385	0.008929
ORF1ab/nsp1	147	D147G	gAC	gGG	1	12	B.1.1.385	0.004464
ORF1ab/nsp1	147	D147G	gAc	gGc	10	12	B.1.1.39	0.005097
ORF1ab/nsp1	147	D147G	gAC	gGG	1	12	B.1.1.39	0.00051
ORF1ab/nsp1	147	D147G	gAC	gGA	1	12	B.1.1.39	0.00051
ORF1ab/nsp1	147	D147D	gaC	gaT	12	12	B.1.258	0.000799
ORF1ab/nsp1	147	D147D	gaC	gaT	12	12	B.1.351	0.000357
ORF1ab/nsp1	147	D147D	gaC	gaT	11	11	AY.34	0.001067
ORF1ab/nsp1	147	D147D	gaC	gaT	11	11	AY.42	0.000443
ORF1ab/nsp1	147	D147D	gaC	gaT	11	11	B.1.426	0.0111
ORF1ab/nsp1	147	D147D	gaC	gaT	11	11	B.1.596	0.000959
ORF1ab/nsp1	147	D147N	Gac	Aac	11	11	B.1.621	0.000974
ORF1ab/nsp1	147	D147D	gaC	gaT	11	11	P.1	0.000173
ORF1ab/nsp1	147	D147D	gaC	gaT	11	11	P.1.7	0.003512
ORF1ab/nsp1	147	D147Y	Gac	Tac	10	10	AY.120.1	0.00321
ORF1ab/nsp1	147	D147G	gAc	gGc	8	10	B.1.1.70	0.002729
ORF1ab/nsp1	147	D147G	gAC	gGG	1	10	B.1.1.70	0.000341
ORF1ab/nsp1	147	D147G	gAC	gGA	1	10	B.1.1.70	0.000341
ORF1ab/nsp1	147	D147D	gaC	gaT	10	10	B.1.221	0.00071
ORF1ab/nsp1	147	D147N	Gac	Aac	10	10	B.1.234	0.001319
ORF1ab/nsp1	147	D147D	gaC	gaT	10	10	P.1.14	0.000478
ORF1ab/nsp1	147	D147D	gaC	gaT	9	9	AY.100	0.000414
ORF1ab/nsp1	147	D147D	gaC	gaT	9	9	AY.29.1	0.001985
ORF1ab/nsp1	147	D147D	gaC	gaT	9	9	AY.3	0.00009
ORF1ab/nsp1	147	D147D	gaC	gaT	9	9	AY.7.2	0.005034
ORF1ab/nsp1	147	D147G	gAc	gGc	9	9	AY.99.2	0.000829
ORF1ab/nsp1	147	D147del	GAC	---	9	9	B.1.1.7	0.000008
ORF1ab/nsp1	147	D147N	Gac	Aac	9	9	B.1.177	0.000119
ORF1ab/nsp1	147	D147E	gaC	gaA	6	9	B.1.177	0.000079
ORF1ab/nsp1	147	D147E	gaC	gaG	3	9	B.1.177	0.00004
ORF1ab/nsp1	147	D147N	Gac	Aac	8	8	AY.47	0.000249
ORF1ab/nsp1	147	D147D	gaC	gaT	8	8	AY.98.1	0.000387
ORF1ab/nsp1	147	D147D	gaC	gaT	8	8	B.1.1	0.000145
ORF1ab/nsp1	147	D147N	Gac	Aac	8	8	P.1.14	0.000382
ORF1ab/nsp1	147	D147D	gaC	gaT	7	7	AY.102	0.000186
ORF1ab/nsp1	147	D147D	gaC	gaT	7	7	AY.12	0.002212
ORF1ab/nsp1	147	D147D	gaC	gaT	7	7	AY.26	0.000198
ORF1ab/nsp1	147	D147G	gAc	gGc	7	7	AY.39	0.000173
ORF1ab/nsp1	147	D147N	Gac	Aac	7	7	AY.43	0.000031
ORF1ab/nsp1	147	D147G	gAc	gGc	7	7	AY.44	0.000043
ORF1ab/nsp1	147	D147D	gaC	gaT	7	7	B.1.1.528	0.033654
ORF1ab/nsp1	147	D147D	gaC	gaT	7	7	B.1.177.81	0.001325
ORF1ab/nsp1	147	D147E	gaC	gaA	4	7	B.1.258	0.000266
ORF1ab/nsp1	147	D147E	gaC	gaG	3	7	B.1.258	0.0002
ORF1ab/nsp1	147	D147N	Gac	Aac	7	7	B.1.36.8	0.007
ORF1ab/nsp1	147	D147D	gaC	gaT	7	7	B.1.595	0.001827
ORF1ab/nsp1	147	D147D	gaC	gaT	7	7	B.1.625	0.016471
ORF1ab/nsp1	147	D147N	Gac	Aac	7	7	P.1	0.00011
ORF1ab/nsp1	147	D147Y	Gac	Tac	7	7	P.1	0.00011
ORF1ab/nsp1	147	D147D	gaC	gaT	7	7	Q.4	0.003183
ORF1ab/nsp1	147	D147D	gaC	gaT	6	6	AY.121	0.000812
ORF1ab/nsp1	147	D147G	gAc	gGc	6	6	AY.43	0.000027
ORF1ab/nsp1	147	D147D	gaC	gaT	6	6	AY.45	0.00073
ORF1ab/nsp1	147	D147D	gaC	gaT	6	6	AY.47	0.000187
ORF1ab/nsp1	147	D147D	gaC	gaT	6	6	AY.9	0.000406
ORF1ab/nsp1	147	D147E	gaC	gaG	3	6	B.1.1	0.000054
ORF1ab/nsp1	147	D147E	gaC	gaA	3	6	B.1.1	0.000054
ORF1ab/nsp1	147	D147D	gaC	gaT	6	6	B.1.1.318	0.001811
ORF1ab/nsp1	147	D147D	gaC	gaT	6	6	B.1.177.12	0.00091
ORF1ab/nsp1	147	D147E	gaC	gaA	5	6	B.1.2	0.000044
ORF1ab/nsp1	147	D147E	gaC	gaG	1	6	B.1.2	0.000009
ORF1ab/nsp1	147	D147A	gAc	gCc	6	6	B.1.617.2	0.000023
ORF1ab/nsp1	147	D147G	gAc	gGc	6	6	B.1.9.4	0.03681
ORF1ab/nsp1	147	D147D	gaC	gaT	6	6	Q.8	0.000989
ORF1ab/nsp1	147	D147del1	gAc	g-c	3	5	All	0.000001
ORF1ab/nsp1	147	D147del1	gAC	gG-	1	5	All	0
ORF1ab/nsp1	147	D147del1	gAC	g-T	1	5	All	0
ORF1ab/nsp1	147	D147D	gaC	gaT	5	5	AY.23	0.000349
ORF1ab/nsp1	147	D147A	gAc	gCc	4	5	AY.25	0.000024
ORF1ab/nsp1	147	D147A	gAC	gCG	1	5	AY.25	0.000006
ORF1ab/nsp1	147	D147D	gaC	gaT	5	5	AY.39	0.000124
ORF1ab/nsp1	147	D147D	gaC	gaT	5	5	AY.99.2	0.000461
ORF1ab/nsp1	147	D147G	gAc	gGc	3	5	B.1.609	0.001438
ORF1ab/nsp1	147	D147G	gAC	gGG	1	5	B.1.609	0.000479
ORF1ab/nsp1	147	D147G	gAC	gGT	1	5	B.1.609	0.000479
ORF1ab/nsp1	147	D147V	gAc	gTc	4	5	B.1.617.2	0.000015
ORF1ab/nsp1	147	D147V	gAC	gTT	1	5	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147G	gAc	gGc	3	5	B.1.78	0.025641
ORF1ab/nsp1	147	D147G	gAC	gGG	1	5	B.1.78	0.008547
ORF1ab/nsp1	147	D147G	gAC	gGT	1	5	B.1.78	0.008547
ORF1ab/nsp1	147	D147G	gAc	gGc	5	5	C.35	0.00387
ORF1ab/nsp1	147	D147G	gAc	gGc	4	5	P.1	0.000063
ORF1ab/nsp1	147	D147G	gAC	gGG	1	5	P.1	0.000016
ORF1ab/nsp1	147	D147D	gaC	gaT	4	4	AY.118	0.000251
ORF1ab/nsp1	147	D147G	gAc	gGc	3	4	AY.25	0.000018
ORF1ab/nsp1	147	D147G	gAC	gGG	1	4	AY.25	0.000006
ORF1ab/nsp1	147	D147G	gAc	gGc	4	4	AY.26	0.000113
ORF1ab/nsp1	147	D147A	gAc	gCc	4	4	AY.3	0.00004
ORF1ab/nsp1	147	D147D	gaC	gaT	4	4	AY.33	0.000267
ORF1ab/nsp1	147	D147G	gAc	gGc	4	4	AY.9.1	0.000335
ORF1ab/nsp1	147	D147Y	Gac	Tac	4	4	B.1.1	0.000073
ORF1ab/nsp1	147	D147del	GAC	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	147	D147del	GAC	---	4	4	B.1.1.348	0.003185
ORF1ab/nsp1	147	D147D	gaC	gaT	4	4	B.1.1.70	0.001364
ORF1ab/nsp1	147	D147G	gAc	gGc	4	4	B.1.177.77	0.002905
ORF1ab/nsp1	147	D147D	gaC	gaT	4	4	B.1.243	0.000278
ORF1ab/nsp1	147	D147N	Gac	Aac	4	4	B.1.258	0.000266
ORF1ab/nsp1	147	D147N	Gac	Aac	4	4	B.1.258.17	0.000416
ORF1ab/nsp1	147	D147Y	Gac	Tac	4	4	B.1.497	0.001259
ORF1ab/nsp1	147	D147G	gAc	gGc	4	4	B.1.580	0.01626
ORF1ab/nsp1	147	D147D	gaC	gaT	4	4	P.1.15	0.000929
ORF1ab/nsp1	147	D147Y	Gac	Tac	3	3	AY.103	0.000019
ORF1ab/nsp1	147	D147E	gaC	gaA	3	3	AY.113	0.000427
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	AY.119	0.000106
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	AY.119	0.000106
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	AY.25	0.000018
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	AY.27	0.000194
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	AY.29	0.000047
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	AY.30	0.001187
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	AY.4.5	0.000322
ORF1ab/nsp1	147	D147del	GAC	---	3	3	AY.43	0.000013
ORF1ab/nsp1	147	D147A	gAc	gCc	3	3	AY.43	0.000013
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	AY.46	0.000312
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	AY.46	0.000312
ORF1ab/nsp1	147	D147E	gaC	gaA	3	3	AY.5	0.000062
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	AY.6	0.000123
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	AY.91	0.002191
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	B	0.000383
ORF1ab/nsp1	147	D147A	gAc	gCc	2	3	B.1	0.000018
ORF1ab/nsp1	147	D147A	gAC	gCT	1	3	B.1	0.000009
ORF1ab/nsp1	147	D147G	gAC	gGG	1	3	B.1.1.1	0.000327
ORF1ab/nsp1	147	D147G	gAc	gGc	1	3	B.1.1.1	0.000327
ORF1ab/nsp1	147	D147G	gAC	gGA	1	3	B.1.1.1	0.000327
ORF1ab/nsp1	147	D147V	gAC	gTG	1	3	B.1.1.1	0.000327
ORF1ab/nsp1	147	D147V	gAc	gTc	1	3	B.1.1.1	0.000327
ORF1ab/nsp1	147	D147V	gAC	gTA	1	3	B.1.1.1	0.000327
ORF1ab/nsp1	147	D147G	gAc	gGc	2	3	B.1.1.170	0.002494
ORF1ab/nsp1	147	D147G	gAC	gGA	1	3	B.1.1.170	0.001247
ORF1ab/nsp1	147	D147G	gAc	gGc	3	3	B.1.1.277	0.002276
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	B.1.1.28	0.000934
ORF1ab/nsp1	147	D147E	gaC	gaA	2	3	B.1.1.385	0.008929
ORF1ab/nsp1	147	D147E	gaC	gaG	1	3	B.1.1.385	0.004464
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	B.1.1.487	0.01676
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	B.1.1.519	0.000119
ORF1ab/nsp1	147	D147V	gAC	gTG	1	3	B.1.177	0.000013
ORF1ab/nsp1	147	D147V	gAc	gTc	1	3	B.1.177	0.000013
ORF1ab/nsp1	147	D147V	gAC	gTA	1	3	B.1.177	0.000013
ORF1ab/nsp1	147	D147E	gaC	gaA	3	3	B.1.177.44	0.001557
ORF1ab/nsp1	147	D147G	gAc	gGc	3	3	B.1.177.81	0.000568
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	B.1.177.84	0.02
ORF1ab/nsp1	147	D147G	gAc	gGc	2	3	B.1.177.86	0.000367
ORF1ab/nsp1	147	D147G	gAC	gGA	1	3	B.1.177.86	0.000183
ORF1ab/nsp1	147	D147Y	Gac	Tac	3	3	B.1.2	0.000026
ORF1ab/nsp1	147	D147A	gAc	gCc	3	3	B.1.2	0.000026
ORF1ab/nsp1	147	D147E	gaC	gaG	2	3	B.1.221	0.000142
ORF1ab/nsp1	147	D147E	gaC	gaA	1	3	B.1.221	0.000071
ORF1ab/nsp1	147	D147G	gAC	gGA	1	3	B.1.222	0.001692
ORF1ab/nsp1	147	D147G	gAc	gGc	1	3	B.1.222	0.001692
ORF1ab/nsp1	147	D147G	gAC	gGG	1	3	B.1.222	0.001692
ORF1ab/nsp1	147	D147V	gAC	gTG	1	3	B.1.258	0.000067
ORF1ab/nsp1	147	D147V	gAC	gTA	1	3	B.1.258	0.000067
ORF1ab/nsp1	147	D147V	gAc	gTc	1	3	B.1.258	0.000067
ORF1ab/nsp1	147	D147G	gAc	gGc	3	3	B.1.258.11	0.001189
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	B.1.258.17	0.000312
ORF1ab/nsp1	147	D147G	gAc	gGc	1	3	B.1.437	0.020833
ORF1ab/nsp1	147	D147G	gAC	gGG	1	3	B.1.437	0.020833
ORF1ab/nsp1	147	D147G	gAC	gGA	1	3	B.1.437	0.020833
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	B.1.575	0.00091
ORF1ab/nsp1	147	D147G	gAc	gGc	2	3	B.1.576	0.001813
ORF1ab/nsp1	147	D147G	gAC	gGG	1	3	B.1.576	0.000907
ORF1ab/nsp1	147	D147D	gaC	gaT	3	3	B.1.582	0.001472
ORF1ab/nsp1	147	D147G	gAc	gGc	3	3	B.1.595	0.000783
ORF1ab/nsp1	147	D147E	gaC	gaA	3	3	B.1.617.2	0.000011
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	B.1.628	0.001057
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	C.36	0.002732
ORF1ab/nsp1	147	D147G	gAc	gGc	3	3	P.1.7	0.000958
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	Q.1	0.000379
ORF1ab/nsp1	147	D147N	Gac	Aac	3	3	R.1	0.00027
ORF1ab/nsp1	147	D147Y	Gac	Tac	2	2	A.28	0.005291
ORF1ab/nsp1	147	D147L	GAC	CTT	1	2	All	0
ORF1ab/nsp1	147	D147L	GAc	CTc	1	2	All	0
ORF1ab/nsp1	147	D147F	GAc	TTc	1	2	All	0
ORF1ab/nsp1	147	D147F	GAC	TTT	1	2	All	0
ORF1ab/nsp1	147	D147V	gAc	gTc	2	2	AY.102	0.000053
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	AY.102	0.000053
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.111	0.000366
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.113	0.000285
ORF1ab/nsp1	147	D147Y	Gac	Tac	2	2	AY.12	0.000632
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.120	0.000074
ORF1ab/nsp1	147	D147Y	Gac	Tac	2	2	AY.23	0.000139
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.27	0.000129
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.29	0.000032
ORF1ab/nsp1	147	D147H	Gac	Cac	2	2	AY.3	0.00002
ORF1ab/nsp1	147	D147E	gaC	gaA	2	2	AY.3	0.00002
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.3.1	0.000171
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	AY.3.1	0.000171
ORF1ab/nsp1	147	D147Y	Gac	Tac	2	2	AY.35	0.000466
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.35	0.000466
ORF1ab/nsp1	147	D147Y	Gac	Tac	2	2	AY.39	0.000049
ORF1ab/nsp1	147	D147A	gAc	gCc	2	2	AY.39.1	0.000079
ORF1ab/nsp1	147	D147V	gAc	gTc	2	2	AY.4	0.000003
ORF1ab/nsp1	147	D147del	GAC	---	2	2	AY.4	0.000003
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	AY.4.2.1	0.000298
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.4.4	0.000818
ORF1ab/nsp1	147	D147A	gAc	gCc	2	2	AY.45	0.000243
ORF1ab/nsp1	147	D147Y	Gac	Tac	2	2	AY.46	0.000208
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.46.2	0.001271
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.46.6	0.000144
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.48	0.00093
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	AY.75	0.000112
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	AY.75	0.000112
ORF1ab/nsp1	147	D147H	Gac	Cac	2	2	B	0.000256
ORF1ab/nsp1	147	D147E	gaC	gaA	1	2	B.1.1.1	0.000327
ORF1ab/nsp1	147	D147E	gaC	gaG	1	2	B.1.1.1	0.000327
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	B.1.1.189	0.003026
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	B.1.1.220	0.003717
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	B.1.1.222	0.000408
ORF1ab/nsp1	147	D147G	gAc	gGc	1	2	B.1.1.317	0.000412
ORF1ab/nsp1	147	D147G	gAC	gGG	1	2	B.1.1.317	0.000412
ORF1ab/nsp1	147	D147Y	Gac	Tac	2	2	B.1.1.37	0.000386
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	B.1.1.37	0.000386
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	B.1.1.372	0.001377
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	B.1.1.385	0.008929
ORF1ab/nsp1	147	D147E	gaC	gaA	1	2	B.1.1.39	0.00051
ORF1ab/nsp1	147	D147E	gaC	gaG	1	2	B.1.1.39	0.00051
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	B.1.1.448	0.004065
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	B.1.1.519	0.000079
ORF1ab/nsp1	147	D147H	Gac	Cac	2	2	B.1.1.7	0.000002
ORF1ab/nsp1	147	D147E	gaC	gaG	1	2	B.1.1.70	0.000341
ORF1ab/nsp1	147	D147E	gaC	gaA	1	2	B.1.1.70	0.000341
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	B.1.146	0.008475
ORF1ab/nsp1	147	D147E	gaC	gaG	1	2	B.1.160	0.000031
ORF1ab/nsp1	147	D147E	gaC	gaA	1	2	B.1.160	0.000031
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	B.1.177.10	0.001756
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	B.1.177.73	0.001133
ORF1ab/nsp1	147	D147G	gAC	gGA	1	2	B.1.177.75	0.001041
ORF1ab/nsp1	147	D147G	gAc	gGc	1	2	B.1.177.75	0.001041
ORF1ab/nsp1	147	D147E	gaC	gaG	1	2	B.1.222	0.001692
ORF1ab/nsp1	147	D147E	gaC	gaA	1	2	B.1.222	0.001692
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	B.1.232	0.001075
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	B.1.258.4	0.006897
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	B.1.325	0.013793
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	B.1.36.17	0.000988
ORF1ab/nsp1	147	D147E	gaC	gaG	1	2	B.1.437	0.020833
ORF1ab/nsp1	147	D147E	gaC	gaA	1	2	B.1.437	0.020833
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	B.1.438	0.013072
ORF1ab/nsp1	147	D147A	gAc	gCc	2	2	B.1.526	0.000047
ORF1ab/nsp1	147	D147A	gAc	gCc	1	2	B.1.576	0.000907
ORF1ab/nsp1	147	D147A	gAC	gCG	1	2	B.1.576	0.000907
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	B.1.596	0.000174
ORF1ab/nsp1	147	D147H	GaC	CaT	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147F	GAc	TTc	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147F	GAC	TTT	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147L	GAC	CTT	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147L	GAc	CTc	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147H	Gac	Cac	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	B.1.619	0.001742
ORF1ab/nsp1	147	D147N	Gac	Aac	2	2	B.1.625	0.004706
ORF1ab/nsp1	147	D147G	gAc	gGc	1	2	B.1.9	0.006173
ORF1ab/nsp1	147	D147G	gAC	gGA	1	2	B.1.9	0.006173
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	B.3	0.001661
ORF1ab/nsp1	147	D147G	gAC	gGA	1	2	C.30	0.001727
ORF1ab/nsp1	147	D147G	gAc	gGc	1	2	C.30	0.001727
ORF1ab/nsp1	147	D147D	gaC	gaT	2	2	C.36	0.001821
ORF1ab/nsp1	147	D147G	gAc	gGc	2	2	K.1	0.047619
ORF1ab/nsp1	147	D147del	GAC	---	2	2	N.4	0.008511
ORF1ab/nsp1	147	D147del	GAC	---	2	2	N.6	0.014184
ORF1ab/nsp1	147	D147del	GAC	---	2	2	P.2	0.000373
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	A.2.2	0.001689
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	A.21	0.00277
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	A.23.1	0.000704
ORF1ab/nsp1	147	D147del2	gAC	g--	1	1	All	0
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	AY.10	0.00053
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	AY.100	0.000046
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	AY.102	0.000027
ORF1ab/nsp1	147	D147E	gaC	gaG	1	1	AY.103	0.000006
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	AY.103	0.000006
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.104	0.001984
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	AY.111	0.000183
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.114	0.000231
ORF1ab/nsp1	147	D147del	GAC	---	1	1	AY.116	0.000287
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	AY.117	0.000085
ORF1ab/nsp1	147	D147del	GAC	---	1	1	AY.12	0.000316
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	AY.120	0.000037
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.121	0.000135
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.13	0.000161
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.14	0.000088
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	AY.14	0.000088
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.20	0.000039
ORF1ab/nsp1	147	D147H	Gac	Cac	1	1	AY.23	0.00007
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	AY.23.1	0.000417
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	AY.24	0.000431
ORF1ab/nsp1	147	D147del	GAC	---	1	1	AY.25	0.000006
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	AY.27	0.000065
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	AY.29	0.000016
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.33	0.000067
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.34	0.000097
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	AY.35	0.000233
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.36	0.000148
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.36	0.000148
ORF1ab/nsp1	147	D147del	GAC	---	1	1	AY.38	0.000499
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	AY.39	0.000025
ORF1ab/nsp1	147	D147V	gAc	gTc	1	1	AY.39	0.000025
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.39.1	0.00004
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.39.2	0.001541
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	AY.4	0.000002
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	AY.4.2	0.000022
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.4.2	0.000022
ORF1ab/nsp1	147	D147del	GAC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp1	147	D147H	Gac	Cac	1	1	AY.42	0.00004
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	AY.42	0.00004
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	AY.43	0.000004
ORF1ab/nsp1	147	D147del1	gAC	g-T	1	1	AY.44	0.000006
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.45	0.000122
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	AY.45	0.000122
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	AY.46	0.000104
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	AY.46.1	0.001027
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.46.4	0.000165
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.46.4	0.000165
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	AY.46.4	0.000165
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	AY.46.6	0.000072
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.46.6	0.000072
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.52	0.000814
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.53	0.000288
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	AY.54	0.000095
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.55	0.000917
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.6	0.000041
ORF1ab/nsp1	147	D147H	Gac	Cac	1	1	AY.61	0.000105
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.61	0.000105
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.65	0.000533
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.74	0.000116
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	AY.75	0.000056
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.75.1	0.00018
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	AY.79	0.001211
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.84	0.000437
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.85	0.000427
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.88	0.000884
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.9.1	0.000084
ORF1ab/nsp1	147	D147del	GAC	---	1	1	AY.9.1	0.000084
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.9.2	0.000037
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.91	0.00073
ORF1ab/nsp1	147	D147del	GAC	---	1	1	AY.95	0.000761
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	AY.98	0.000079
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	AY.98	0.000079
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.98.1	0.000048
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	AY.99.2	0.000092
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B	0.000128
ORF1ab/nsp1	147	D147del2	gAC	g--	1	1	B.1	0.000009
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.1.123	0.017857
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.129	0.009174
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.149	0.016393
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.153	0.001095
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.1.153	0.001095
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	B.1.1.170	0.001247
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.193	0.111111
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.220	0.001859
ORF1ab/nsp1	147	D147del	GAC	---	1	1	B.1.1.220	0.001859
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.1.222	0.000204
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.1.25	0.000569
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.1.28	0.000311
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.1.298	0.000862
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.301	0.001179
ORF1ab/nsp1	147	D147G	gAC	gGT	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	147	D147E	gaC	gaG	1	1	B.1.1.317	0.000412
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.1.317	0.000412
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.348	0.000796
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.1.348	0.000796
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.389	0.006061
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	B.1.1.448	0.002033
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.1.486	0.001577
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.487	0.005587
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.1.50	0.000679
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.515	0.02
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.521	0.005348
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.1.528	0.004808
ORF1ab/nsp1	147	D147del1	gAC	gG-	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.160	0.000031
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.160.31	0.008065
ORF1ab/nsp1	147	D147del	GAC	---	1	1	B.1.160.7	0.002079
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.170	0.00431
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.177.15	0.000631
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	B.1.177.21	0.000076
ORF1ab/nsp1	147	D147V	gAc	gTc	1	1	B.1.177.21	0.000076
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	B.1.177.23	0.003236
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.177.33	0.001645
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.177.35	0.000691
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	147	D147del	GAC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.177.60	0.000218
ORF1ab/nsp1	147	D147V	gAC	gTT	1	1	B.1.177.7	0.000165
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.177.72	0.00339
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.177.73	0.000566
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	B.1.177.75	0.001041
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.177.83	0.001481
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	B.1.177.86	0.000183
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.177.87	0.000728
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.179	0.003759
ORF1ab/nsp1	147	D147del1	gAc	g-c	1	1	B.1.2	0.000009
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.219	0.009434
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.221	0.000071
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.232	0.000537
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.234	0.000132
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.240	0.000216
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.243	0.00007
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.265	0.001271
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.284	0.013158
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.293	0.0125
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.329	0.000608
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.330	0.028571
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.337	0.005587
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	B.1.351	0.00003
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.351.3	0.000876
ORF1ab/nsp1	147	D147del	GAC	---	1	1	B.1.36	0.000146
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.36	0.000146
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.36.10	0.004785
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.36.21	0.00216
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.36.24	0.006173
ORF1ab/nsp1	147	D147H	Gac	Cac	1	1	B.1.36.29	0.000517
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.36.38	0.001642
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	B.1.36.8	0.001
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.369	0.000285
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.369	0.000285
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.396	0.000706
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.400	0.000429
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.409	0.000781
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.427	0.00005
ORF1ab/nsp1	147	D147del	GAC	---	1	1	B.1.427	0.00005
ORF1ab/nsp1	147	D147del	GAC	---	1	1	B.1.429	0.000024
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.432	0.011236
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.503	0.002488
ORF1ab/nsp1	147	D147V	gAc	gTc	1	1	B.1.505	0.004386
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.517.1	0.005263
ORF1ab/nsp1	147	D147V	gAc	gTc	1	1	B.1.526	0.000024
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.564	0.000426
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.565	0.00081
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.565	0.00081
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.575	0.000303
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.1.580	0.004065
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.582	0.000491
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.596	0.000087
ORF1ab/nsp1	147	D147E	gaC	gaG	1	1	B.1.609	0.000479
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.609	0.000479
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	B.1.609	0.000479
ORF1ab/nsp1	147	D147del1	gAc	g-c	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.619	0.000871
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.620	0.000946
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.621	0.000089
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	B.1.621.1	0.000506
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	B.1.625	0.002353
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.627	0.00202
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.628	0.000352
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.634	0.003425
ORF1ab/nsp1	147	D147E	gaC	gaG	1	1	B.1.78	0.008547
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	B.1.78	0.008547
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.88.1	0.004808
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	B.1.9	0.006173
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	B.1.9.5	0.005682
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	B.6	0.00091
ORF1ab/nsp1	147	D147Y	Gac	Tac	1	1	C.17	0.055556
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	C.30	0.001727
ORF1ab/nsp1	147	D147del	GAC	---	1	1	C.35	0.000774
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	C.37	0.000116
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	D.2	0.000075
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	D.5	0.004975
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	N.3	0.005814
ORF1ab/nsp1	147	D147E	gaC	gaG	1	1	P.1	0.000016
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	P.1.10	0.000269
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	P.1.14	0.000048
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	P.1.15	0.000232
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	P.1.17	0.000162
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	P.2	0.000187
ORF1ab/nsp1	147	D147del1	gAc	g-c	1	1	Q.1	0.000126
ORF1ab/nsp1	147	D147D	gaC	gaT	1	1	Q.3	0.000145
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	Q.4	0.000455
ORF1ab/nsp1	147	D147N	Gac	Aac	1	1	Q.7	0.001111
ORF1ab/nsp1	147	D147del	GAC	---	1	1	Q.8	0.000165
ORF1ab/nsp1	147	D147A	gAc	gCc	1	1	R.1	0.00009
ORF1ab/nsp1	147	D147G	gAc	gGc	1	1	R.1	0.00009
ORF1ab/nsp1	147	D147E	gaC	gaA	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.