CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 141

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1141K141delK141deldelAAG---32706327061686-688
ORF1ab/nsp1141K141NK141NnonsynaaGaaT7567500.992063686-688
ORF1ab/nsp1141K141NK141NnonsynaaGaaC75660.00793651686-688
ORF1ab/nsp1141K141KK141KsynaaGaaA6176171686-688
ORF1ab/nsp1141K141RK141RnonsynaAgaGg2192191686-688
ORF1ab/nsp1141K141EK141EnonsynAagGag80630.7875686-688
ORF1ab/nsp1141K141EK141EnonsynAaGGaA80170.2125686-688
ORF1ab/nsp1141K141DK141DnonsynAaGGaC48481686-688
ORF1ab/nsp1141K141TK141TnonsynaAgaCg43380.883721686-688
ORF1ab/nsp1141K141TK141TnonsynaAGaCA4350.116279686-688
ORF1ab/nsp1141K141MK141MnonsynaAgaTg13131686-688
ORF1ab/nsp1141K141FK141FnonsynAAGTTT12121686-688
ORF1ab/nsp1141K141QK141QnonsynAagCag991686-688
ORF1ab/nsp1141K141del1K141del1delAaG-aN840.5686-688
ORF1ab/nsp1141K141del1K141del1delaaGaa-840.5686-688
ORF1ab/nsp1141K141GK141GnonsynAAgGGg661686-688
ORF1ab/nsp1141K141del2K141del2delaAGa--331686-688
ORF1ab/nsp1141K141XK141XnonsynAagTag210.5686-688
ORF1ab/nsp1141K141IK141InonsynaAGaTT210.5686-688
ORF1ab/nsp1141K141XK141XnonsynAaGTaA210.5686-688
ORF1ab/nsp1141K141IK141InonsynaAGaTA210.5686-688
ORF1ab/nsp1141K141SK141SnonsynaAGaGC111686-688

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1141K141delAAG---3270632706All0.006255
ORF1ab/nsp1141K141delAAG---41804180AY.40.006506
ORF1ab/nsp1141K141delAAG---34553455AY.1100.38934
ORF1ab/nsp1141K141delAAG---29802980AY.700.621351
ORF1ab/nsp1141K141delAAG---24512451AY.630.948162
ORF1ab/nsp1141K141delAAG---21762176B.1.617.20.008194
ORF1ab/nsp1141K141delAAG---17931793B.1.1.70.001605
ORF1ab/nsp1141K141NaaGaaT750756All0.000143
ORF1ab/nsp1141K141NaaGaaC6756All0.000001
ORF1ab/nsp1141K141delAAG---753753AY.260.021318
ORF1ab/nsp1141K141delAAG---711711AY.720.967347
ORF1ab/nsp1141K141delAAG---670670AY.250.00403
ORF1ab/nsp1141K141delAAG---663663B.10.006073
ORF1ab/nsp1141K141delAAG---632632AY.440.003847
ORF1ab/nsp1141K141KaaGaaA617617All0.000118
ORF1ab/nsp1141K141delAAG---601601AY.430.002663
ORF1ab/nsp1141K141delAAG---596596AY.1200.022159
ORF1ab/nsp1141K141delAAG---480480AY.1030.00298
ORF1ab/nsp1141K141delAAG---457457AY.30.004545
ORF1ab/nsp1141K141NaaGaaT321323AY.40.0005
ORF1ab/nsp1141K141NaaGaaC2323AY.40.000003
ORF1ab/nsp1141K141delAAG---319319B.1.1600.009949
ORF1ab/nsp1141K141delAAG---315315AY.50.006505
ORF1ab/nsp1141K141delAAG---312312AY.4.20.006767
ORF1ab/nsp1141K141delAAG---304304AY.610.031852
ORF1ab/nsp1141K141KaaGaaA288288B.1.1.70.000258
ORF1ab/nsp1141K141delAAG---262262AY.750.014678
ORF1ab/nsp1141K141delAAG---260260B.1.160.170.442177
ORF1ab/nsp1141K141delAAG---241241AY.46.60.017402
ORF1ab/nsp1141K141delAAG---237237B.1.20.002087
ORF1ab/nsp1141K141RaAgaGg219219All0.000042
ORF1ab/nsp1141K141delAAG---214214AY.1020.005674
ORF1ab/nsp1141K141delAAG---181181AY.16.10.085056
ORF1ab/nsp1141K141delAAG---172172B.1.5260.004043
ORF1ab/nsp1141K141delAAG---169169AY.460.01759
ORF1ab/nsp1141K141delAAG---165165AY.390.004077
ORF1ab/nsp1141K141delAAG---163163B.1.10.002957
ORF1ab/nsp1141K141delAAG---148148B.1.1.5190.005877
ORF1ab/nsp1141K141delAAG---137137P.10.002158
ORF1ab/nsp1141K141delAAG---136136AY.470.00423
ORF1ab/nsp1141K141delAAG---133133AY.210.252372
ORF1ab/nsp1141K141delAAG---133133AY.4.50.014296
ORF1ab/nsp1141K141delAAG---124124B.1.3510.003686
ORF1ab/nsp1141K141delAAG---123123B.1.2580.008185
ORF1ab/nsp1141K141delAAG---117117B.1.1770.001541
ORF1ab/nsp1141K141delAAG---115115AY.540.010965
ORF1ab/nsp1141K141delAAG---111111AY.330.007412
ORF1ab/nsp1141K141delAAG---100100AY.120.10.032103
ORF1ab/nsp1141K141delAAG---9999AY.420.003983
ORF1ab/nsp1141K141delAAG---9999B.1.4290.002329
ORF1ab/nsp1141K141delAAG---9898B.1.6210.008675
ORF1ab/nsp1141K141delAAG---9797AY.9.10.008121
ORF1ab/nsp1141K141delAAG---9696D.20.007204
ORF1ab/nsp1141K141delAAG---9595AY.370.030025
ORF1ab/nsp1141K141delAAG---9595AY.39.10.003763
ORF1ab/nsp1141K141delAAG---9494AY.1190.003319
ORF1ab/nsp1141K141delAAG---9191AY.9.20.003342
ORF1ab/nsp1141K141delAAG---9191B.1.3721
ORF1ab/nsp1141K141NaaGaaT9090AY.420.003621
ORF1ab/nsp1141K141delAAG---8686B.1.2430.005984
ORF1ab/nsp1141K141EAagGag6380All0.000012
ORF1ab/nsp1141K141EAaGGaA1780All0.000003
ORF1ab/nsp1141K141KaaGaaA7979AY.40.000123
ORF1ab/nsp1141K141delAAG---7777AY.740.008905
ORF1ab/nsp1141K141NaaGaaT6969B.1.10.001252
ORF1ab/nsp1141K141delAAG---6969B.1.1950.346734
ORF1ab/nsp1141K141delAAG---6868B.1.6370.004969
ORF1ab/nsp1141K141delAAG---6565AY.960.134855
ORF1ab/nsp1141K141delAAG---6060B.1.177.210.004588
ORF1ab/nsp1141K141delAAG---6060B.1.4270.00303
ORF1ab/nsp1141K141delAAG---5858AY.290.000915
ORF1ab/nsp1141K141delAAG---5858B.1.1.2140.003217
ORF1ab/nsp1141K141delAAG---5757AY.70.011172
ORF1ab/nsp1141K141delAAG---5656AY.1180.003508
ORF1ab/nsp1141K141delAAG---5656AY.140.004929
ORF1ab/nsp1141K141KaaGaaA5555AY.200.002138
ORF1ab/nsp1141K141delAAG---5555B.1.438.10.005899
ORF1ab/nsp1141K141delAAG---5353AY.130.008532
ORF1ab/nsp1141K141delAAG---5353B.1.1.3180.015993
ORF1ab/nsp1141K141delAAG---5252AY.1000.002392
ORF1ab/nsp1141K141delAAG---5252AY.450.006328
ORF1ab/nsp1141K141delAAG---5050AY.200.001943
ORF1ab/nsp1141K141DAaGGaC4848All0.000009
ORF1ab/nsp1141K141delAAG---4545AY.3.10.003837
ORF1ab/nsp1141K141delAAG---4545AY.90.003042
ORF1ab/nsp1141K141delAAG---4545B.1.1.2220.00918
ORF1ab/nsp1141K141delAAG---4444AY.350.010254
ORF1ab/nsp1141K141delAAG---4444AY.910.03214
ORF1ab/nsp1141K141TaAgaCg3843All0.000007
ORF1ab/nsp1141K141TaAGaCA543All0.000001
ORF1ab/nsp1141K141delAAG---4343AY.1090.031805
ORF1ab/nsp1141K141delAAG---4343C.350.033282
ORF1ab/nsp1141K141delAAG---4242AY.230.002929
ORF1ab/nsp1141K141delAAG---4242AY.75.10.007573
ORF1ab/nsp1141K141KaaGaaA4040AY.440.000243
ORF1ab/nsp1141K141delAAG---3939AY.980.003081
ORF1ab/nsp1141K141delAAG---3939B.1.5960.003398
ORF1ab/nsp1141K141delAAG---3838AY.46.40.006251
ORF1ab/nsp1141K141delAAG---3636AY.98.10.001744
ORF1ab/nsp1141K141delAAG---3636B.1.2320.019344
ORF1ab/nsp1141K141delAAG---3535AY.100.018548
ORF1ab/nsp1141K141delAAG---3535AY.270.002265
ORF1ab/nsp1141K141delAAG---3434AY.1170.002874
ORF1ab/nsp1141K141RaAgaGg3434B.1.2210.002415
ORF1ab/nsp1141K141delAAG---3434C.36.30.019285
ORF1ab/nsp1141K141delAAG---3333AY.60.001357
ORF1ab/nsp1141K141delAAG---3333AY.99.20.003041
ORF1ab/nsp1141K141delAAG---3333B.1.258.170.003431
ORF1ab/nsp1141K141delAAG---3232B.1.1.700.010914
ORF1ab/nsp1141K141delAAG---3131B0.003962
ORF1ab/nsp1141K141NaaGaaT3030B.1.1.70.000027
ORF1ab/nsp1141K141delAAG---3030B.1.2210.002131
ORF1ab/nsp1141K141delAAG---2929AY.5.30.009784
ORF1ab/nsp1141K141NaaGaaT2929B.1.5600.134259
ORF1ab/nsp1141K141delAAG---2828AY.1070.013048
ORF1ab/nsp1141K141delAAG---2828AY.650.014925
ORF1ab/nsp1141K141delAAG---2828B.1.1.2840.003007
ORF1ab/nsp1141K141delAAG---2727AY.1140.00624
ORF1ab/nsp1141K141NaaGaaT2727AY.50.000558
ORF1ab/nsp1141K141delAAG---2727AY.9.2.10.05336
ORF1ab/nsp1141K141delAAG---2727B.1.1.370.005207
ORF1ab/nsp1141K141delAAG---2727B.1.6280.009514
ORF1ab/nsp1141K141TaAgaCg2626AY.30.000259
ORF1ab/nsp1141K141delAAG---2626AY.550.023853
ORF1ab/nsp1141K141delAAG---2626B.1.1.3740.061758
ORF1ab/nsp1141K141delAAG---2626B.1.595.10.152047
ORF1ab/nsp1141K141delAAG---2626P.1.140.001243
ORF1ab/nsp1141K141delAAG---2525AE.10.284091
ORF1ab/nsp1141K141delAAG---2525AY.690.004667
ORF1ab/nsp1141K141delAAG---2424A.270.039735
ORF1ab/nsp1141K141delAAG---2424AY.120.2.10.011958
ORF1ab/nsp1141K141KaaGaaA2424AY.30.000239
ORF1ab/nsp1141K141delAAG---2424B.1.258.220.064
ORF1ab/nsp1141K141delAAG---2323AY.10.009102
ORF1ab/nsp1141K141delAAG---2323AY.530.006613
ORF1ab/nsp1141K141EAagGag2223B.1.1.70.00002
ORF1ab/nsp1141K141EAaGGaA123B.1.1.70.000001
ORF1ab/nsp1141K141delAAG---2323B.1.2340.003035
ORF1ab/nsp1141K141delAAG---2222AE.80.010758
ORF1ab/nsp1141K141KaaGaaA2222AY.290.000347
ORF1ab/nsp1141K141delAAG---2222AY.620.009586
ORF1ab/nsp1141K141delAAG---2222AY.710.010451
ORF1ab/nsp1141K141delAAG---2222B.1.2400.004742
ORF1ab/nsp1141K141RaAgaGg2222B.1.617.20.000083
ORF1ab/nsp1141K141delAAG---2121B.1.1.1760.009227
ORF1ab/nsp1141K141RaAgaGg2121B.1.1.370.00405
ORF1ab/nsp1141K141NaaGaaT2121B.1.617.20.000079
ORF1ab/nsp1141K141delAAG---2020B.1.1.500.013578
ORF1ab/nsp1141K141RaAgaGg2020B.1.1.70.000018
ORF1ab/nsp1141K141delAAG---2020B.1.177.560.013351
ORF1ab/nsp1141K141delAAG---2020Q.10.002527
ORF1ab/nsp1141K141delAAG---1919AY.340.001842
ORF1ab/nsp1141K141delAAG---1919AY.360.002816
ORF1ab/nsp1141K141delAAG---1919AY.480.008837
ORF1ab/nsp1141K141delAAG---1919AY.510.017273
ORF1ab/nsp1141K141delAAG---1919B.1.177.40.00401
ORF1ab/nsp1141K141delAAG---1919B.1.621.10.009611
ORF1ab/nsp1141K141delAAG---1818P.1.100.00485
ORF1ab/nsp1141K141RaAgaGg1717AY.40.000026
ORF1ab/nsp1141K141delAAG---1717AY.900.011636
ORF1ab/nsp1141K141KaaGaaA1717B.1.617.20.000064
ORF1ab/nsp1141K141delAAG---1616AY.160.006074
ORF1ab/nsp1141K141NaaGaaT1616AY.430.000071
ORF1ab/nsp1141K141delAAG---1616B.1.2790.008218
ORF1ab/nsp1141K141delAAG---1616Q.80.002639
ORF1ab/nsp1141K141delAAG---1515AY.300.005936
ORF1ab/nsp1141K141RaAgaGg1515AY.430.000066
ORF1ab/nsp1141K141delAAG---1515B.1.5170.006405
ORF1ab/nsp1141K141delAAG---1515C.180.03886
ORF1ab/nsp1141K141delAAG---1515P.1.170.002426
ORF1ab/nsp1141K141delAAG---1414AY.120.004425
ORF1ab/nsp1141K141delAAG---1414AY.590.007415
ORF1ab/nsp1141K141delAAG---1414B.1.177.120.002124
ORF1ab/nsp1141K141delAAG---1414B.1.2390.017094
ORF1ab/nsp1141K141delAAG---1414B.1.350.118644
ORF1ab/nsp1141K141delAAG---1414B.1.360.002043
ORF1ab/nsp1141K141delAAG---1414B.1.36.180.005882
ORF1ab/nsp1141K141delAAG---1414B.1.36.360.008429
ORF1ab/nsp1141K141MaAgaTg1313All0.000002
ORF1ab/nsp1141K141delAAG---1313AY.1210.001759
ORF1ab/nsp1141K141KaaGaaA1313AY.250.000078
ORF1ab/nsp1141K141EAaGGaA913AY.40.000014
ORF1ab/nsp1141K141EAagGag413AY.40.000006
ORF1ab/nsp1141K141delAAG---1313AY.520.010586
ORF1ab/nsp1141K141delAAG---1313AY.580.011797
ORF1ab/nsp1141K141delAAG---1313B.1.1.3720.008953
ORF1ab/nsp1141K141NaaGaaT1313B.1.20.000114
ORF1ab/nsp1141K141delAAG---1313C.370.001509
ORF1ab/nsp1141K141FAAGTTT1212All0.000002
ORF1ab/nsp1141K141delAAG---1212AY.1130.001709
ORF1ab/nsp1141K141delAAG---1212AY.1160.003441
ORF1ab/nsp1141K141delAAG---1212AY.20.004274
ORF1ab/nsp1141K141delAAG---1212AY.4.2.10.001788
ORF1ab/nsp1141K141FAAGTTT1212AY.430.000053
ORF1ab/nsp1141K141delAAG---1212AY.7.10.001352
ORF1ab/nsp1141K141delAAG---1212AZ.20.009852
ORF1ab/nsp1141K141delAAG---1212B.1.1.4340.004183
ORF1ab/nsp1141K141delAAG---1212B.1.1390.008798
ORF1ab/nsp1141K141delAAG---1212B.1.4000.005148
ORF1ab/nsp1141K141delAAG---1212P.1.70.003831
ORF1ab/nsp1141K141delAAG---1111AD.20.002409
ORF1ab/nsp1141K141DAaGGaC1111AY.1100.00124
ORF1ab/nsp1141K141delAAG---1111B.1.1.1530.012048
ORF1ab/nsp1141K141delAAG---1111B.1.1.3650.061453
ORF1ab/nsp1141K141delAAG---1111B.1.5680.012222
ORF1ab/nsp1141K141RaAgaGg1111P.10.000173
ORF1ab/nsp1141K141delAAG---1010AU.10.012658
ORF1ab/nsp1141K141delAAG---1010AY.240.00431
ORF1ab/nsp1141K141RaAgaGg1010AY.460.001041
ORF1ab/nsp1141K141delAAG---1010AY.920.002873
ORF1ab/nsp1141K141delAAG---1010AY.930.002731
ORF1ab/nsp1141K141NaaGaaT1010B.10.000092
ORF1ab/nsp1141K141delAAG---1010B.1.1.330.004209
ORF1ab/nsp1141K141delAAG---1010B.1.3200.012453
ORF1ab/nsp1141K141delAAG---1010B.1.3290.006075
ORF1ab/nsp1141K141RaAgaGg1010B.1.621.10.005058
ORF1ab/nsp1141K141delAAG---1010B.1.6230.005365
ORF1ab/nsp1141K141delAAG---1010B.1.6300.052356
ORF1ab/nsp1141K141QAagCag99All0.000002
ORF1ab/nsp1141K141delAAG---99AY.34.10.004589
ORF1ab/nsp1141K141NaaGaaT99AY.440.000055
ORF1ab/nsp1141K141delAAG---99AY.600.008443
ORF1ab/nsp1141K141delAAG---99AY.940.003984
ORF1ab/nsp1141K141delAAG---99B.1.1.4330.012821
ORF1ab/nsp1141K141delAAG---99B.1.36.210.019438
ORF1ab/nsp1141K141delAAG---99B.1.4220.007311
ORF1ab/nsp1141K141delAAG---99B.1.5510.011613
ORF1ab/nsp1141K141delAAG---99B.1.5820.004416
ORF1ab/nsp1141K141del1AaG-aN48All0.000001
ORF1ab/nsp1141K141del1aaGaa-48All0.000001
ORF1ab/nsp1141K141KaaGaaA88AY.1030.00005
ORF1ab/nsp1141K141delAAG---88AY.380.003994
ORF1ab/nsp1141K141NaaGaaT88AY.390.000198
ORF1ab/nsp1141K141delAAG---88AY.570.005249
ORF1ab/nsp1141K141delAAG---88AY.840.0035
ORF1ab/nsp1141K141delAAG---88AY.880.007073
ORF1ab/nsp1141K141RaAgaGg88B.10.000073
ORF1ab/nsp1141K141delAAG---88B.1.1.3110.002865
ORF1ab/nsp1141K141delAAG---88B.1.1.3480.006369
ORF1ab/nsp1141K141delAAG---88B.1.214.20.004796
ORF1ab/nsp1141K141delAAG---88B.1.3490.005718
ORF1ab/nsp1141K141delAAG---88B.1.390.03125
ORF1ab/nsp1141K141delAAG---88B.1.5250.000905
ORF1ab/nsp1141K141delAAG---88B.1.5640.003407
ORF1ab/nsp1141K141delAAG---88P.1.150.001859
ORF1ab/nsp1141K141RaAgaGg77AY.1030.000043
ORF1ab/nsp1141K141KaaGaaA77AY.1210.000947
ORF1ab/nsp1141K141delAAG---77AY.190.007982
ORF1ab/nsp1141K141KaaGaaA77AY.390.000173
ORF1ab/nsp1141K141delAAG---77AY.410.002058
ORF1ab/nsp1141K141delAAG---77AY.46.50.001389
ORF1ab/nsp1141K141delAAG---77AY.640.004167
ORF1ab/nsp1141K141delAAG---77AY.850.00299
ORF1ab/nsp1141K141delAAG---77B.1.1.10.002287
ORF1ab/nsp1141K141delAAG---77B.1.1.1410.014085
ORF1ab/nsp1141K141delAAG---77B.1.1.2040.021277
ORF1ab/nsp1141K141delAAG---77B.1.1.2770.005311
ORF1ab/nsp1141K141delAAG---77B.1.1.3060.003069
ORF1ab/nsp1141K141delAAG---77B.1.1.5230.010937
ORF1ab/nsp1141K141delAAG---77B.1.1280.004447
ORF1ab/nsp1141K141delAAG---77B.1.160.240.030973
ORF1ab/nsp1141K141delAAG---77B.1.177.150.004416
ORF1ab/nsp1141K141delAAG---77B.1.177.600.001529
ORF1ab/nsp1141K141delAAG---77B.1.258.30.011725
ORF1ab/nsp1141K141delAAG---77B.1.36.190.064815
ORF1ab/nsp1141K141delAAG---77B.1.4970.002203
ORF1ab/nsp1141K141delAAG---77B.1.5880.006369
ORF1ab/nsp1141K141delAAG---77B.1.617.10.000903
ORF1ab/nsp1141K141delAAG---77B.310.026119
ORF1ab/nsp1141K141delAAG---77B.60.006369
ORF1ab/nsp1141K141delAAG---66A.10.001691
ORF1ab/nsp1141K141NaaGaaT66A.2.50.002994
ORF1ab/nsp1141K141GAAgGGg66All0.000001
ORF1ab/nsp1141K141delAAG---66AY.1060.002009
ORF1ab/nsp1141K141EAagGag66AY.200.000233
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