CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 136 & Codon = taT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1136Y136YY136YsyntaCtaT520252021671-673

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1136Y136YtaCtaT52025202All0.000995
ORF1ab/nsp1136Y136YtaCtaT13431343AY.40.00209
ORF1ab/nsp1136Y136YtaCtaT517517B.1.1.70.000463
ORF1ab/nsp1136Y136YtaCtaT426426B.1.1.1920.983834
ORF1ab/nsp1136Y136YtaCtaT357357AY.440.002173
ORF1ab/nsp1136Y136YtaCtaT304304B.1.617.20.001145
ORF1ab/nsp1136Y136YtaCtaT269269AY.430.001192
ORF1ab/nsp1136Y136YtaCtaT203203B.1.10.003683
ORF1ab/nsp1136Y136YtaCtaT172172AY.70.033712
ORF1ab/nsp1136Y136YtaCtaT167167B.1.20.00147
ORF1ab/nsp1136Y136YtaCtaT143143AY.930.03905
ORF1ab/nsp1136Y136YtaCtaT120120B.1.214.30.857143
ORF1ab/nsp1136Y136YtaCtaT7676AY.1030.000472
ORF1ab/nsp1136Y136YtaCtaT7474B.10.000678
ORF1ab/nsp1136Y136YtaCtaT6262AY.260.001755
ORF1ab/nsp1136Y136YtaCtaT5959AY.250.000355
ORF1ab/nsp1136Y136YtaCtaT4444AY.200.00171
ORF1ab/nsp1136Y136YtaCtaT4040P.10.00063
ORF1ab/nsp1136Y136YtaCtaT3333B.1.6210.002921
ORF1ab/nsp1136Y136YtaCtaT2525B.1.1770.000329
ORF1ab/nsp1136Y136YtaCtaT2323AY.30.000229
ORF1ab/nsp1136Y136YtaCtaT2222AY.420.000885
ORF1ab/nsp1136Y136YtaCtaT2121AY.240.009052
ORF1ab/nsp1136Y136YtaCtaT2121AY.370.006637
ORF1ab/nsp1136Y136YtaCtaT2121B.1.2430.001461
ORF1ab/nsp1136Y136YtaCtaT1919AY.99.20.001751
ORF1ab/nsp1136Y136YtaCtaT1919B.1.3850.202128
ORF1ab/nsp1136Y136YtaCtaT1616AY.1180.001002
ORF1ab/nsp1136Y136YtaCtaT1616B.1.2580.001065
ORF1ab/nsp1136Y136YtaCtaT1515AY.470.000467
ORF1ab/nsp1136Y136YtaCtaT1414AY.1020.000371
ORF1ab/nsp1136Y136YtaCtaT1414AY.39.10.000555
ORF1ab/nsp1136Y136YtaCtaT1313AY.390.000321
ORF1ab/nsp1136Y136YtaCtaT1313AY.46.50.002579
ORF1ab/nsp1136Y136YtaCtaT1313AY.98.10.00063
ORF1ab/nsp1136Y136YtaCtaT1313B.1.3510.000386
ORF1ab/nsp1136Y136YtaCtaT1212AY.5.30.004049
ORF1ab/nsp1136Y136YtaCtaT1111AY.9.10.000921
ORF1ab/nsp1136Y136YtaCtaT1111B.1.5960.000959
ORF1ab/nsp1136Y136YtaCtaT1010AY.450.001217
ORF1ab/nsp1136Y136YtaCtaT1010B.1.4270.000505
ORF1ab/nsp1136Y136YtaCtaT1010C.370.001161
ORF1ab/nsp1136Y136YtaCtaT1010P.1.170.001618
ORF1ab/nsp1136Y136YtaCtaT99AY.1130.001282
ORF1ab/nsp1136Y136YtaCtaT99AY.1200.000335
ORF1ab/nsp1136Y136YtaCtaT99AY.650.004797
ORF1ab/nsp1136Y136YtaCtaT99B.1.3770.041096
ORF1ab/nsp1136Y136YtaCtaT99B.1.4690.032491
ORF1ab/nsp1136Y136YtaCtaT99P.20.00168
ORF1ab/nsp1136Y136YtaCtaT88AY.3.10.000682
ORF1ab/nsp1136Y136YtaCtaT88B.1.4290.000188
ORF1ab/nsp1136Y136YtaCtaT88B.1.5260.000188
ORF1ab/nsp1136Y136YtaCtaT88P.30.012759
ORF1ab/nsp1136Y136YtaCtaT77A.2.50.003493
ORF1ab/nsp1136Y136YtaCtaT77AY.290.00011
ORF1ab/nsp1136Y136YtaCtaT77B.1.177.160.004651
ORF1ab/nsp1136Y136YtaCtaT66AY.50.000124
ORF1ab/nsp1136Y136YtaCtaT66B.1.1.2220.001224
ORF1ab/nsp1136Y136YtaCtaT66B.1.1600.000187
ORF1ab/nsp1136Y136YtaCtaT66B.1.5950.001566
ORF1ab/nsp1136Y136YtaCtaT66B.1.6290.08
ORF1ab/nsp1136Y136YtaCtaT55AY.1000.00023
ORF1ab/nsp1136Y136YtaCtaT55B0.000639
ORF1ab/nsp1136Y136YtaCtaT55B.1.1.2160.004452
ORF1ab/nsp1136Y136YtaCtaT55B.1.1.2730.033784
ORF1ab/nsp1136Y136YtaCtaT55B.1.360.00073
ORF1ab/nsp1136Y136YtaCtaT55B.1.36.10.005701
ORF1ab/nsp1136Y136YtaCtaT55P.1.70.001596
ORF1ab/nsp1136Y136YtaCtaT44AY.1160.001147
ORF1ab/nsp1136Y136YtaCtaT44AY.330.000267
ORF1ab/nsp1136Y136YtaCtaT44AY.4.20.000087
ORF1ab/nsp1136Y136YtaCtaT44AY.460.000416
ORF1ab/nsp1136Y136YtaCtaT44AY.60.000165
ORF1ab/nsp1136Y136YtaCtaT44AY.950.003044
ORF1ab/nsp1136Y136YtaCtaT44B.1.1.2840.00043
ORF1ab/nsp1136Y136YtaCtaT44B.1.177.670.030534
ORF1ab/nsp1136Y136YtaCtaT44B.1.2100.008529
ORF1ab/nsp1136Y136YtaCtaT44B.1.214.10.08
ORF1ab/nsp1136Y136YtaCtaT44B.1.2340.000528
ORF1ab/nsp1136Y136YtaCtaT44B.1.6370.000292
ORF1ab/nsp1136Y136YtaCtaT44P.1.140.000191
ORF1ab/nsp1136Y136YtaCtaT33AD.20.000657
ORF1ab/nsp1136Y136YtaCtaT33AY.1210.000406
ORF1ab/nsp1136Y136YtaCtaT33AY.160.001139
ORF1ab/nsp1136Y136YtaCtaT33AY.230.000209
ORF1ab/nsp1136Y136YtaCtaT33AY.350.000699
ORF1ab/nsp1136Y136YtaCtaT33AY.4.50.000322
ORF1ab/nsp1136Y136YtaCtaT33AY.7.10.000338
ORF1ab/nsp1136Y136YtaCtaT33AY.700.000626
ORF1ab/nsp1136Y136YtaCtaT33B.1.1.3190.052632
ORF1ab/nsp1136Y136YtaCtaT33B.1.1.3720.002066
ORF1ab/nsp1136Y136YtaCtaT33B.1.1.700.001023
ORF1ab/nsp1136Y136YtaCtaT33B.1.36.170.001482
ORF1ab/nsp1136Y136YtaCtaT33B.1.36.80.003
ORF1ab/nsp1136Y136YtaCtaT33B.1.3690.000856
ORF1ab/nsp1136Y136YtaCtaT33B.1.5250.000339
ORF1ab/nsp1136Y136YtaCtaT33B.1.5820.001472
ORF1ab/nsp1136Y136YtaCtaT33B.1.6050.017857
ORF1ab/nsp1136Y136YtaCtaT33D.20.000225
ORF1ab/nsp1136Y136YtaCtaT33Q.80.000495
ORF1ab/nsp1136Y136YtaCtaT22AY.100.00106
ORF1ab/nsp1136Y136YtaCtaT22AY.116.10.000623
ORF1ab/nsp1136Y136YtaCtaT22AY.1190.000071
ORF1ab/nsp1136Y136YtaCtaT22AY.16.10.00094
ORF1ab/nsp1136Y136YtaCtaT22AY.23.10.000835
ORF1ab/nsp1136Y136YtaCtaT22AY.29.10.000441
ORF1ab/nsp1136Y136YtaCtaT22AY.34.10.00102
ORF1ab/nsp1136Y136YtaCtaT22AY.400.001929
ORF1ab/nsp1136Y136YtaCtaT22AY.46.60.000144
ORF1ab/nsp1136Y136YtaCtaT22AY.530.000575
ORF1ab/nsp1136Y136YtaCtaT22AY.540.000191
ORF1ab/nsp1136Y136YtaCtaT22AY.580.001815
ORF1ab/nsp1136Y136YtaCtaT22AY.590.001059
ORF1ab/nsp1136Y136YtaCtaT22AY.750.000112
ORF1ab/nsp1136Y136YtaCtaT22AY.75.10.000361
ORF1ab/nsp1136Y136YtaCtaT22AY.770.002255
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.1570.001826
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.1760.000879
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.280.000622
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.3110.000716
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.5190.000079
ORF1ab/nsp1136Y136YtaCtaT22B.1.1690.029851
ORF1ab/nsp1136Y136YtaCtaT22B.1.177.770.001452
ORF1ab/nsp1136Y136YtaCtaT22B.1.214.20.001199
ORF1ab/nsp1136Y136YtaCtaT22B.1.2210.000142
ORF1ab/nsp1136Y136YtaCtaT22B.1.258.170.000208
ORF1ab/nsp1136Y136YtaCtaT22B.1.36.180.00084
ORF1ab/nsp1136Y136YtaCtaT22B.1.36.290.001035
ORF1ab/nsp1136Y136YtaCtaT22B.1.5230.004902
ORF1ab/nsp1136Y136YtaCtaT22B.1.575.20.009615
ORF1ab/nsp1136Y136YtaCtaT22B.1.5880.00182
ORF1ab/nsp1136Y136YtaCtaT22P.70.008734
ORF1ab/nsp1136Y136YtaCtaT22Q.30.00029
ORF1ab/nsp1136Y136YtaCtaT22Q.40.00091
ORF1ab/nsp1136Y136YtaCtaT11A.23.10.000704
ORF1ab/nsp1136Y136YtaCtaT11AY.1050.000643
ORF1ab/nsp1136Y136YtaCtaT11AY.1170.000085
ORF1ab/nsp1136Y136YtaCtaT11AY.120.000316
ORF1ab/nsp1136Y136YtaCtaT11AY.130.000161
ORF1ab/nsp1136Y136YtaCtaT11AY.140.000088
ORF1ab/nsp1136Y136YtaCtaT11AY.210.001898
ORF1ab/nsp1136Y136YtaCtaT11AY.270.000065
ORF1ab/nsp1136Y136YtaCtaT11AY.320.000532
ORF1ab/nsp1136Y136YtaCtaT11AY.380.000499
ORF1ab/nsp1136Y136YtaCtaT11AY.4.2.10.000149
ORF1ab/nsp1136Y136YtaCtaT11AY.410.000294
ORF1ab/nsp1136Y136YtaCtaT11AY.46.40.000165
ORF1ab/nsp1136Y136YtaCtaT11AY.5.40.000277
ORF1ab/nsp1136Y136YtaCtaT11AY.560.001605
ORF1ab/nsp1136Y136YtaCtaT11AY.7.20.000559
ORF1ab/nsp1136Y136YtaCtaT11AY.720.001361
ORF1ab/nsp1136Y136YtaCtaT11AY.730.000665
ORF1ab/nsp1136Y136YtaCtaT11AY.740.000116
ORF1ab/nsp1136Y136YtaCtaT11AY.850.000427
ORF1ab/nsp1136Y136YtaCtaT11AY.890.004902
ORF1ab/nsp1136Y136YtaCtaT11AY.9.20.000037
ORF1ab/nsp1136Y136YtaCtaT11AY.920.000287
ORF1ab/nsp1136Y136YtaCtaT11AY.980.000079
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.1210.002427
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.1890.001513
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.2650.003155
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3120.001912
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3170.000412
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3690.000446
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.390.00051
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3970.002252
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.4120.007634
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.4200.001006
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.510.001718
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.560.017857
ORF1ab/nsp1136Y136YtaCtaT11B.1.160.230.004831
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.240.001295
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.410.0025
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.440.000519
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.540.000606
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.630.002703
ORF1ab/nsp1136Y136YtaCtaT11B.1.2060.000816
ORF1ab/nsp1136Y136YtaCtaT11B.1.230.006061
ORF1ab/nsp1136Y136YtaCtaT11B.1.2400.000216
ORF1ab/nsp1136Y136YtaCtaT11B.1.258.30.001675
ORF1ab/nsp1136Y136YtaCtaT11B.1.2800.007143
ORF1ab/nsp1136Y136YtaCtaT11B.1.2890.00266
ORF1ab/nsp1136Y136YtaCtaT11B.1.3490.000715
ORF1ab/nsp1136Y136YtaCtaT11B.1.36.120.009615
ORF1ab/nsp1136Y136YtaCtaT11B.1.36.70.004
ORF1ab/nsp1136Y136YtaCtaT11B.1.3710.001122
ORF1ab/nsp1136Y136YtaCtaT11B.1.3750.00082
ORF1ab/nsp1136Y136YtaCtaT11B.1.3970.004854
ORF1ab/nsp1136Y136YtaCtaT11B.1.3990.001934
ORF1ab/nsp1136Y136YtaCtaT11B.1.4360.001029
ORF1ab/nsp1136Y136YtaCtaT11B.1.4590.004082
ORF1ab/nsp1136Y136YtaCtaT11B.1.466.20.000391
ORF1ab/nsp1136Y136YtaCtaT11B.1.5170.000427
ORF1ab/nsp1136Y136YtaCtaT11B.1.5450.014493
ORF1ab/nsp1136Y136YtaCtaT11B.1.5720.025
ORF1ab/nsp1136Y136YtaCtaT11B.1.6090.000479
ORF1ab/nsp1136Y136YtaCtaT11B.1.617.10.000129
ORF1ab/nsp1136Y136YtaCtaT11B.1.6270.00202
ORF1ab/nsp1136Y136YtaCtaT11B.400.000364
ORF1ab/nsp1136Y136YtaCtaT11C.160.00106
ORF1ab/nsp1136Y136YtaCtaT11P.1.10.000318
ORF1ab/nsp1136Y136YtaCtaT11P.1.100.000269
ORF1ab/nsp1136Y136YtaCtaT11P.1.150.000232
ORF1ab/nsp1136Y136YtaCtaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.