CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 136

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1136Y136YY136YsyntaCtaT520252021671-673
ORF1ab/nsp1136Y136NY136NnonsynTacAac5125110.998047671-673
ORF1ab/nsp1136Y136NY136NnonsynTaCAaT51210.00195312671-673
ORF1ab/nsp1136Y136HY136HnonsynTacCac1161161671-673
ORF1ab/nsp1136Y136CY136CnonsyntActGc1111111671-673
ORF1ab/nsp1136Y136delY136deldelTAC---76761671-673
ORF1ab/nsp1136Y136XY136XnonsyntaCtaG730.428571671-673
ORF1ab/nsp1136Y136XY136XnonsyntaCtaA730.428571671-673
ORF1ab/nsp1136Y136XY136XnonsyntACtGA710.142857671-673
ORF1ab/nsp1136Y136del2Y136del2deltACt--441671-673
ORF1ab/nsp1136Y136FY136FnonsyntActTc430.75671-673
ORF1ab/nsp1136Y136FY136FnonsyntACtTT410.25671-673
ORF1ab/nsp1136Y136DY136DnonsynTacGac331671-673
ORF1ab/nsp1136Y136LY136LnonsynTACCTA310.333333671-673
ORF1ab/nsp1136Y136LY136LnonsynTACCTT310.333333671-673
ORF1ab/nsp1136Y136LY136LnonsyntACtTA310.333333671-673
ORF1ab/nsp1136Y136del1Y136del1deltaCta-221671-673
ORF1ab/nsp1136Y136SY136SnonsyntACtCT210.5671-673
ORF1ab/nsp1136Y136SY136SnonsyntACtCA210.5671-673
ORF1ab/nsp1136Y136PY136PnonsynTACCCA210.5671-673
ORF1ab/nsp1136Y136PY136PnonsynTACCCT210.5671-673

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1136Y136YtaCtaT52025202All0.000995
ORF1ab/nsp1136Y136YtaCtaT13431343AY.40.00209
ORF1ab/nsp1136Y136YtaCtaT517517B.1.1.70.000463
ORF1ab/nsp1136Y136NTacAac511512All0.000098
ORF1ab/nsp1136Y136NTaCAaT1512All0
ORF1ab/nsp1136Y136YtaCtaT426426B.1.1.1920.983834
ORF1ab/nsp1136Y136YtaCtaT357357AY.440.002173
ORF1ab/nsp1136Y136YtaCtaT304304B.1.617.20.001145
ORF1ab/nsp1136Y136YtaCtaT269269AY.430.001192
ORF1ab/nsp1136Y136YtaCtaT203203B.1.10.003683
ORF1ab/nsp1136Y136YtaCtaT172172AY.70.033712
ORF1ab/nsp1136Y136YtaCtaT167167B.1.20.00147
ORF1ab/nsp1136Y136NTacAac155155AY.120.048989
ORF1ab/nsp1136Y136YtaCtaT143143AY.930.03905
ORF1ab/nsp1136Y136YtaCtaT120120B.1.214.30.857143
ORF1ab/nsp1136Y136HTacCac116116All0.000022
ORF1ab/nsp1136Y136CtActGc111111All0.000021
ORF1ab/nsp1136Y136delTAC---7676All0.000015
ORF1ab/nsp1136Y136YtaCtaT7676AY.1030.000472
ORF1ab/nsp1136Y136YtaCtaT7474B.10.000678
ORF1ab/nsp1136Y136YtaCtaT6262AY.260.001755
ORF1ab/nsp1136Y136YtaCtaT5959AY.250.000355
ORF1ab/nsp1136Y136YtaCtaT4444AY.200.00171
ORF1ab/nsp1136Y136YtaCtaT4040P.10.00063
ORF1ab/nsp1136Y136NTacAac3636AY.430.000159
ORF1ab/nsp1136Y136NTacAac3333AY.40.000051
ORF1ab/nsp1136Y136YtaCtaT3333B.1.6210.002921
ORF1ab/nsp1136Y136NTacAac3131B.1.1.70.000028
ORF1ab/nsp1136Y136NTacAac2828B.1.617.20.000105
ORF1ab/nsp1136Y136NTacAac2626AY.250.000156
ORF1ab/nsp1136Y136NTacAac2525B.10.000229
ORF1ab/nsp1136Y136delTAC---2525B.1.10.000454
ORF1ab/nsp1136Y136YtaCtaT2525B.1.1770.000329
ORF1ab/nsp1136Y136YtaCtaT2323AY.30.000229
ORF1ab/nsp1136Y136YtaCtaT2222AY.420.000885
ORF1ab/nsp1136Y136YtaCtaT2121AY.240.009052
ORF1ab/nsp1136Y136YtaCtaT2121AY.370.006637
ORF1ab/nsp1136Y136YtaCtaT2121B.1.2430.001461
ORF1ab/nsp1136Y136CtActGc2020AY.290.000315
ORF1ab/nsp1136Y136NTacAac1919AY.470.000591
ORF1ab/nsp1136Y136HTacCac1919AY.470.000591
ORF1ab/nsp1136Y136YtaCtaT1919AY.99.20.001751
ORF1ab/nsp1136Y136YtaCtaT1919B.1.3850.202128
ORF1ab/nsp1136Y136NTacAac1717AY.440.000103
ORF1ab/nsp1136Y136HTacCac1717B.1.1.70.000015
ORF1ab/nsp1136Y136YtaCtaT1616AY.1180.001002
ORF1ab/nsp1136Y136YtaCtaT1616B.1.2580.001065
ORF1ab/nsp1136Y136YtaCtaT1515AY.470.000467
ORF1ab/nsp1136Y136CtActGc1515B.1.1.70.000013
ORF1ab/nsp1136Y136YtaCtaT1414AY.1020.000371
ORF1ab/nsp1136Y136YtaCtaT1414AY.39.10.000555
ORF1ab/nsp1136Y136NTacAac1313AY.30.000129
ORF1ab/nsp1136Y136YtaCtaT1313AY.390.000321
ORF1ab/nsp1136Y136CtActGc1313AY.40.00002
ORF1ab/nsp1136Y136YtaCtaT1313AY.46.50.002579
ORF1ab/nsp1136Y136YtaCtaT1313AY.98.10.00063
ORF1ab/nsp1136Y136YtaCtaT1313B.1.3510.000386
ORF1ab/nsp1136Y136HTacCac1212AY.40.000019
ORF1ab/nsp1136Y136YtaCtaT1212AY.5.30.004049
ORF1ab/nsp1136Y136delTAC---1212B.1.1.70.000011
ORF1ab/nsp1136Y136CtActGc1111AY.30.000109
ORF1ab/nsp1136Y136YtaCtaT1111AY.9.10.000921
ORF1ab/nsp1136Y136YtaCtaT1111B.1.5960.000959
ORF1ab/nsp1136Y136YtaCtaT1010AY.450.001217
ORF1ab/nsp1136Y136YtaCtaT1010B.1.4270.000505
ORF1ab/nsp1136Y136YtaCtaT1010C.370.001161
ORF1ab/nsp1136Y136YtaCtaT1010P.1.170.001618
ORF1ab/nsp1136Y136YtaCtaT99AY.1130.001282
ORF1ab/nsp1136Y136YtaCtaT99AY.1200.000335
ORF1ab/nsp1136Y136HTacCac99AY.440.000055
ORF1ab/nsp1136Y136YtaCtaT99AY.650.004797
ORF1ab/nsp1136Y136HTacCac99B.1.177.770.006536
ORF1ab/nsp1136Y136YtaCtaT99B.1.3770.041096
ORF1ab/nsp1136Y136YtaCtaT99B.1.4690.032491
ORF1ab/nsp1136Y136YtaCtaT99P.20.00168
ORF1ab/nsp1136Y136YtaCtaT88AY.3.10.000682
ORF1ab/nsp1136Y136NTacAac88AY.610.000838
ORF1ab/nsp1136Y136YtaCtaT88B.1.4290.000188
ORF1ab/nsp1136Y136YtaCtaT88B.1.5260.000188
ORF1ab/nsp1136Y136YtaCtaT88P.30.012759
ORF1ab/nsp1136Y136YtaCtaT77A.2.50.003493
ORF1ab/nsp1136Y136XtaCtaG37All0.000001
ORF1ab/nsp1136Y136XtaCtaA37All0.000001
ORF1ab/nsp1136Y136XtACtGA17All0
ORF1ab/nsp1136Y136YtaCtaT77AY.290.00011
ORF1ab/nsp1136Y136YtaCtaT77B.1.177.160.004651
ORF1ab/nsp1136Y136YtaCtaT66AY.50.000124
ORF1ab/nsp1136Y136NTacAac66B.1.10.000109
ORF1ab/nsp1136Y136YtaCtaT66B.1.1.2220.001224
ORF1ab/nsp1136Y136YtaCtaT66B.1.1600.000187
ORF1ab/nsp1136Y136YtaCtaT66B.1.5950.001566
ORF1ab/nsp1136Y136CtActGc66B.1.617.20.000023
ORF1ab/nsp1136Y136HTacCac66B.1.617.20.000023
ORF1ab/nsp1136Y136YtaCtaT66B.1.6290.08
ORF1ab/nsp1136Y136YtaCtaT55AY.1000.00023
ORF1ab/nsp1136Y136NTacAac55AY.1030.000031
ORF1ab/nsp1136Y136NTacAac55AY.390.000124
ORF1ab/nsp1136Y136NTacAac55AY.46.40.000823
ORF1ab/nsp1136Y136NTacAac55AY.750.00028
ORF1ab/nsp1136Y136YtaCtaT55B0.000639
ORF1ab/nsp1136Y136YtaCtaT55B.1.1.2160.004452
ORF1ab/nsp1136Y136YtaCtaT55B.1.1.2730.033784
ORF1ab/nsp1136Y136NTacAac55B.1.1.370.000964
ORF1ab/nsp1136Y136YtaCtaT55B.1.360.00073
ORF1ab/nsp1136Y136YtaCtaT55B.1.36.10.005701
ORF1ab/nsp1136Y136CtActGc55B.1.4270.000252
ORF1ab/nsp1136Y136YtaCtaT55P.1.70.001596
ORF1ab/nsp1136Y136del2tACt--44All0.000001
ORF1ab/nsp1136Y136FtActTc34All0.000001
ORF1ab/nsp1136Y136FtACtTT14All0
ORF1ab/nsp1136Y136CtActGc44AY.1030.000025
ORF1ab/nsp1136Y136YtaCtaT44AY.1160.001147
ORF1ab/nsp1136Y136YtaCtaT44AY.330.000267
ORF1ab/nsp1136Y136YtaCtaT44AY.4.20.000087
ORF1ab/nsp1136Y136HTacCac44AY.430.000018
ORF1ab/nsp1136Y136YtaCtaT44AY.460.000416
ORF1ab/nsp1136Y136YtaCtaT44AY.60.000165
ORF1ab/nsp1136Y136YtaCtaT44AY.950.003044
ORF1ab/nsp1136Y136YtaCtaT44B.1.1.2840.00043
ORF1ab/nsp1136Y136delTAC---44B.1.1.330.001684
ORF1ab/nsp1136Y136delTAC---44B.1.1.3480.003185
ORF1ab/nsp1136Y136YtaCtaT44B.1.177.670.030534
ORF1ab/nsp1136Y136CtActGc44B.1.20.000035
ORF1ab/nsp1136Y136YtaCtaT44B.1.2100.008529
ORF1ab/nsp1136Y136YtaCtaT44B.1.214.10.08
ORF1ab/nsp1136Y136YtaCtaT44B.1.2340.000528
ORF1ab/nsp1136Y136NTacAac44B.1.6230.002146
ORF1ab/nsp1136Y136YtaCtaT44B.1.6370.000292
ORF1ab/nsp1136Y136YtaCtaT44P.1.140.000191
ORF1ab/nsp1136Y136NTacAac44P.1.140.000191
ORF1ab/nsp1136Y136YtaCtaT33AD.20.000657
ORF1ab/nsp1136Y136DTacGac33All0.000001
ORF1ab/nsp1136Y136LTACCTT13All0
ORF1ab/nsp1136Y136LtACtTA13All0
ORF1ab/nsp1136Y136LTACCTA13All0
ORF1ab/nsp1136Y136CtActGc33AY.1020.00008
ORF1ab/nsp1136Y136CtActGc33AY.1190.000106
ORF1ab/nsp1136Y136YtaCtaT33AY.1210.000406
ORF1ab/nsp1136Y136YtaCtaT33AY.160.001139
ORF1ab/nsp1136Y136YtaCtaT33AY.230.000209
ORF1ab/nsp1136Y136HTacCac33AY.250.000018
ORF1ab/nsp1136Y136NTacAac33AY.270.000194
ORF1ab/nsp1136Y136NTacAac33AY.290.000047
ORF1ab/nsp1136Y136YtaCtaT33AY.350.000699
ORF1ab/nsp1136Y136YtaCtaT33AY.4.50.000322
ORF1ab/nsp1136Y136delTAC---33AY.430.000013
ORF1ab/nsp1136Y136YtaCtaT33AY.7.10.000338
ORF1ab/nsp1136Y136YtaCtaT33AY.700.000626
ORF1ab/nsp1136Y136CtActGc33B.10.000027
ORF1ab/nsp1136Y136YtaCtaT33B.1.1.3190.052632
ORF1ab/nsp1136Y136YtaCtaT33B.1.1.3720.002066
ORF1ab/nsp1136Y136YtaCtaT33B.1.1.700.001023
ORF1ab/nsp1136Y136NTacAac33B.1.1770.00004
ORF1ab/nsp1136Y136NTacAac33B.1.20.000026
ORF1ab/nsp1136Y136YtaCtaT33B.1.36.170.001482
ORF1ab/nsp1136Y136YtaCtaT33B.1.36.80.003
ORF1ab/nsp1136Y136YtaCtaT33B.1.3690.000856
ORF1ab/nsp1136Y136HTacCac33B.1.4290.000071
ORF1ab/nsp1136Y136YtaCtaT33B.1.5250.000339
ORF1ab/nsp1136Y136YtaCtaT33B.1.5820.001472
ORF1ab/nsp1136Y136YtaCtaT33B.1.6050.017857
ORF1ab/nsp1136Y136LtACtTA13B.1.617.20.000004
ORF1ab/nsp1136Y136LTACCTT13B.1.617.20.000004
ORF1ab/nsp1136Y136LTACCTA13B.1.617.20.000004
ORF1ab/nsp1136Y136HTacCac33B.1.6210.000266
ORF1ab/nsp1136Y136NTacAac33B.1.6210.000266
ORF1ab/nsp1136Y136YtaCtaT33D.20.000225
ORF1ab/nsp1136Y136YtaCtaT33Q.80.000495
ORF1ab/nsp1136Y136NTacAac22A.10.000564
ORF1ab/nsp1136Y136del1taCta-22All0
ORF1ab/nsp1136Y136StACtCA12All0
ORF1ab/nsp1136Y136PTACCCT12All0
ORF1ab/nsp1136Y136PTACCCA12All0
ORF1ab/nsp1136Y136StACtCT12All0
ORF1ab/nsp1136Y136YtaCtaT22AY.100.00106
ORF1ab/nsp1136Y136YtaCtaT22AY.116.10.000623
ORF1ab/nsp1136Y136YtaCtaT22AY.1190.000071
ORF1ab/nsp1136Y136NTacAac22AY.1200.000074
ORF1ab/nsp1136Y136NTacAac22AY.140.000176
ORF1ab/nsp1136Y136YtaCtaT22AY.16.10.00094
ORF1ab/nsp1136Y136YtaCtaT22AY.23.10.000835
ORF1ab/nsp1136Y136CtActGc22AY.250.000012
ORF1ab/nsp1136Y136NTacAac22AY.260.000057
ORF1ab/nsp1136Y136CtActGc22AY.270.000129
ORF1ab/nsp1136Y136YtaCtaT22AY.29.10.000441
ORF1ab/nsp1136Y136NTacAac22AY.3.10.000171
ORF1ab/nsp1136Y136YtaCtaT22AY.34.10.00102
ORF1ab/nsp1136Y136HTacCac22AY.370.000632
ORF1ab/nsp1136Y136delTAC---22AY.40.000003
ORF1ab/nsp1136Y136CtActGc22AY.4.20.000043
ORF1ab/nsp1136Y136HTacCac22AY.4.20.000043
ORF1ab/nsp1136Y136NTacAac22AY.4.20.000043
ORF1ab/nsp1136Y136YtaCtaT22AY.400.001929
ORF1ab/nsp1136Y136CtActGc22AY.440.000012
ORF1ab/nsp1136Y136YtaCtaT22AY.46.60.000144
ORF1ab/nsp1136Y136CtActGc22AY.50.000041
ORF1ab/nsp1136Y136NTacAac22AY.510.001818
ORF1ab/nsp1136Y136YtaCtaT22AY.530.000575
ORF1ab/nsp1136Y136YtaCtaT22AY.540.000191
ORF1ab/nsp1136Y136NTacAac22AY.540.000191
ORF1ab/nsp1136Y136YtaCtaT22AY.580.001815
ORF1ab/nsp1136Y136YtaCtaT22AY.590.001059
ORF1ab/nsp1136Y136YtaCtaT22AY.750.000112
ORF1ab/nsp1136Y136YtaCtaT22AY.75.10.000361
ORF1ab/nsp1136Y136YtaCtaT22AY.770.002255
ORF1ab/nsp1136Y136NTacAac22AY.99.20.000184
ORF1ab/nsp1136Y136NTacAac22B0.000256
ORF1ab/nsp1136Y136del2tACt--22B.10.000018
ORF1ab/nsp1136Y136HTacCac22B.10.000018
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.1570.001826
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.1760.000879
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.280.000622
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.3110.000716
ORF1ab/nsp1136Y136NTacAac22B.1.1.4090.005666
ORF1ab/nsp1136Y136YtaCtaT22B.1.1.5190.000079
ORF1ab/nsp1136Y136NTacAac22B.1.1.5190.000079
ORF1ab/nsp1136Y136XtACtGA12B.1.160.160.000929
ORF1ab/nsp1136Y136XtaCtaA12B.1.160.160.000929
ORF1ab/nsp1136Y136YtaCtaT22B.1.1690.029851
ORF1ab/nsp1136Y136NTacAac22B.1.177.320.002699
ORF1ab/nsp1136Y136YtaCtaT22B.1.177.770.001452
ORF1ab/nsp1136Y136HTacCac22B.1.177.860.000367
ORF1ab/nsp1136Y136HTacCac22B.1.20.000018
ORF1ab/nsp1136Y136YtaCtaT22B.1.214.20.001199
ORF1ab/nsp1136Y136YtaCtaT22B.1.2210.000142
ORF1ab/nsp1136Y136NTaCAaT12B.1.2580.000067
ORF1ab/nsp1136Y136NTacAac12B.1.2580.000067
ORF1ab/nsp1136Y136YtaCtaT22B.1.258.170.000208
ORF1ab/nsp1136Y136YtaCtaT22B.1.36.180.00084
ORF1ab/nsp1136Y136YtaCtaT22B.1.36.290.001035
ORF1ab/nsp1136Y136NTacAac22B.1.4290.000047
ORF1ab/nsp1136Y136YtaCtaT22B.1.5230.004902
ORF1ab/nsp1136Y136YtaCtaT22B.1.575.20.009615
ORF1ab/nsp1136Y136YtaCtaT22B.1.5880.00182
ORF1ab/nsp1136Y136XtaCtaG22B.1.617.20.000008
ORF1ab/nsp1136Y136StACtCA12B.1.617.20.000004
ORF1ab/nsp1136Y136PTACCCA12B.1.617.20.000004
ORF1ab/nsp1136Y136StACtCT12B.1.617.20.000004
ORF1ab/nsp1136Y136PTACCCT12B.1.617.20.000004
ORF1ab/nsp1136Y136NTacAac22B.6.60.001778
ORF1ab/nsp1136Y136CtActGc22C.370.000232
ORF1ab/nsp1136Y136FtActTc22D.20.00015
ORF1ab/nsp1136Y136HTacCac22D.20.00015
ORF1ab/nsp1136Y136delTAC---22N.40.008511
ORF1ab/nsp1136Y136delTAC---22N.60.014184
ORF1ab/nsp1136Y136HTacCac22P.10.000032
ORF1ab/nsp1136Y136delTAC---22P.20.000373
ORF1ab/nsp1136Y136YtaCtaT22P.70.008734
ORF1ab/nsp1136Y136YtaCtaT22Q.30.00029
ORF1ab/nsp1136Y136YtaCtaT22Q.40.00091
ORF1ab/nsp1136Y136YtaCtaT11A.23.10.000704
ORF1ab/nsp1136Y136NTacAac11AU.20.002421
ORF1ab/nsp1136Y136NTacAac11AY.1000.000046
ORF1ab/nsp1136Y136HTacCac11AY.1020.000027
ORF1ab/nsp1136Y136NTacAac11AY.1020.000027
ORF1ab/nsp1136Y136YtaCtaT11AY.1050.000643
ORF1ab/nsp1136Y136NTacAac11AY.1100.000113
ORF1ab/nsp1136Y136delTAC---11AY.1160.000287
ORF1ab/nsp1136Y136CtActGc11AY.1170.000085
ORF1ab/nsp1136Y136YtaCtaT11AY.1170.000085
ORF1ab/nsp1136Y136NTacAac11AY.1180.000063
ORF1ab/nsp1136Y136NTacAac11AY.1190.000035
ORF1ab/nsp1136Y136YtaCtaT11AY.120.000316
ORF1ab/nsp1136Y136delTAC---11AY.120.000316
ORF1ab/nsp1136Y136NTacAac11AY.130.000161
ORF1ab/nsp1136Y136YtaCtaT11AY.130.000161
ORF1ab/nsp1136Y136CtActGc11AY.140.000088
ORF1ab/nsp1136Y136YtaCtaT11AY.140.000088
ORF1ab/nsp1136Y136NTacAac11AY.160.00038
ORF1ab/nsp1136Y136YtaCtaT11AY.210.001898
ORF1ab/nsp1136Y136delTAC---11AY.250.000006
ORF1ab/nsp1136Y136delTAC---11AY.260.000028
ORF1ab/nsp1136Y136YtaCtaT11AY.270.000065
ORF1ab/nsp1136Y136HTacCac11AY.290.000016
ORF1ab/nsp1136Y136HTacCac11AY.30.00001
ORF1ab/nsp1136Y136YtaCtaT11AY.320.000532
ORF1ab/nsp1136Y136YtaCtaT11AY.380.000499
ORF1ab/nsp1136Y136delTAC---11AY.380.000499
ORF1ab/nsp1136Y136CtActGc11AY.390.000025
ORF1ab/nsp1136Y136YtaCtaT11AY.4.2.10.000149
ORF1ab/nsp1136Y136delTAC---11AY.4.50.000107
ORF1ab/nsp1136Y136YtaCtaT11AY.410.000294
ORF1ab/nsp1136Y136CtActGc11AY.430.000004
ORF1ab/nsp1136Y136CtActGc11AY.460.000104
ORF1ab/nsp1136Y136YtaCtaT11AY.46.40.000165
ORF1ab/nsp1136Y136CtActGc11AY.46.40.000165
ORF1ab/nsp1136Y136NTacAac11AY.46.50.000198
ORF1ab/nsp1136Y136NTacAac11AY.46.60.000072
ORF1ab/nsp1136Y136YtaCtaT11AY.5.40.000277
ORF1ab/nsp1136Y136YtaCtaT11AY.560.001605
ORF1ab/nsp1136Y136NTacAac11AY.60.000041
ORF1ab/nsp1136Y136HTacCac11AY.610.000105
ORF1ab/nsp1136Y136delTAC---11AY.650.000533
ORF1ab/nsp1136Y136CtActGc11AY.670.000464
ORF1ab/nsp1136Y136NTacAac11AY.690.000187
ORF1ab/nsp1136Y136NTacAac11AY.7.10.000113
ORF1ab/nsp1136Y136YtaCtaT11AY.7.20.000559
ORF1ab/nsp1136Y136YtaCtaT11AY.720.001361
ORF1ab/nsp1136Y136YtaCtaT11AY.730.000665
ORF1ab/nsp1136Y136YtaCtaT11AY.740.000116
ORF1ab/nsp1136Y136HTacCac11AY.750.000056
ORF1ab/nsp1136Y136CtActGc11AY.830.001724
ORF1ab/nsp1136Y136YtaCtaT11AY.850.000427
ORF1ab/nsp1136Y136YtaCtaT11AY.890.004902
ORF1ab/nsp1136Y136delTAC---11AY.9.10.000084
ORF1ab/nsp1136Y136HTacCac11AY.9.10.000084
ORF1ab/nsp1136Y136YtaCtaT11AY.9.20.000037
ORF1ab/nsp1136Y136HTacCac11AY.9.20.000037
ORF1ab/nsp1136Y136CtActGc11AY.9.20.000037
ORF1ab/nsp1136Y136YtaCtaT11AY.920.000287
ORF1ab/nsp1136Y136DTacGac11AY.950.000761
ORF1ab/nsp1136Y136delTAC---11AY.950.000761
ORF1ab/nsp1136Y136YtaCtaT11AY.980.000079
ORF1ab/nsp1136Y136NTacAac11AY.98.10.000048
ORF1ab/nsp1136Y136del1taCta-11B.10.000009
ORF1ab/nsp1136Y136DTacGac11B.10.000009
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.1210.002427
ORF1ab/nsp1136Y136NTacAac11B.1.1.1710.003676
ORF1ab/nsp1136Y136NTacAac11B.1.1.1760.000439
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.1890.001513
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp1136Y136NTacAac11B.1.1.2280.003049
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.2650.003155
ORF1ab/nsp1136Y136HTacCac11B.1.1.2840.000107
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp1136Y136NTacAac11B.1.1.3110.000358
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3120.001912
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3170.000412
ORF1ab/nsp1136Y136NTacAac11B.1.1.3180.000302
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3690.000446
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.390.00051
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.3970.002252
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.4120.007634
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.4200.001006
ORF1ab/nsp1136Y136NTacAac11B.1.1.4300.041667
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.510.001718
ORF1ab/nsp1136Y136HTacCac11B.1.1.5190.00004
ORF1ab/nsp1136Y136delTAC---11B.1.1.520.012195
ORF1ab/nsp1136Y136YtaCtaT11B.1.1.560.017857
ORF1ab/nsp1136Y136delTAC---11B.1.1.570.011494
ORF1ab/nsp1136Y136del1taCta-11B.1.1.70.000001
ORF1ab/nsp1136Y136XtaCtaA11B.1.1.70.000001
ORF1ab/nsp1136Y136NTacAac11B.1.1.770.041667
ORF1ab/nsp1136Y136NTacAac11B.1.1600.000031
ORF1ab/nsp1136Y136HTacCac11B.1.1600.000031
ORF1ab/nsp1136Y136CtActGc11B.1.160.160.000929
ORF1ab/nsp1136Y136YtaCtaT11B.1.160.230.004831
ORF1ab/nsp1136Y136NTacAac11B.1.160.300.002976
ORF1ab/nsp1136Y136delTAC---11B.1.160.70.002079
ORF1ab/nsp1136Y136HTacCac11B.1.1640.014925
ORF1ab/nsp1136Y136NTacAac11B.1.1660.008475
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.240.001295
ORF1ab/nsp1136Y136NTacAac11B.1.177.40.000211
ORF1ab/nsp1136Y136delTAC---11B.1.177.40.000211
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.410.0025
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.440.000519
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.540.000606
ORF1ab/nsp1136Y136delTAC---11B.1.177.60.000977
ORF1ab/nsp1136Y136YtaCtaT11B.1.177.630.002703
ORF1ab/nsp1136Y136XtaCtaA11B.1.177.730.000566
ORF1ab/nsp1136Y136HTacCac11B.1.177.810.000189
ORF1ab/nsp1136Y136delTAC---11B.1.177.90.001332
ORF1ab/nsp1136Y136XtaCtaG11B.1.20.000009
ORF1ab/nsp1136Y136YtaCtaT11B.1.2060.000816
ORF1ab/nsp1136Y136HTacCac11B.1.2060.000816
ORF1ab/nsp1136Y136CtActGc11B.1.2220.001692
ORF1ab/nsp1136Y136YtaCtaT11B.1.230.006061
ORF1ab/nsp1136Y136del2tACt--11B.1.2340.000132
ORF1ab/nsp1136Y136YtaCtaT11B.1.2400.000216
ORF1ab/nsp1136Y136YtaCtaT11B.1.258.30.001675
ORF1ab/nsp1136Y136NTacAac11B.1.2790.000514
ORF1ab/nsp1136Y136YtaCtaT11B.1.2800.007143
ORF1ab/nsp1136Y136YtaCtaT11B.1.2890.00266
ORF1ab/nsp1136Y136NTacAac11B.1.2890.00266
ORF1ab/nsp1136Y136YtaCtaT11B.1.3490.000715
ORF1ab/nsp1136Y136NTacAac11B.1.3510.00003
ORF1ab/nsp1136Y136NTacAac11B.1.351.30.000876
ORF1ab/nsp1136Y136delTAC---11B.1.360.000146
ORF1ab/nsp1136Y136YtaCtaT11B.1.36.120.009615
ORF1ab/nsp1136Y136YtaCtaT11B.1.36.70.004
ORF1ab/nsp1136Y136NTacAac11B.1.3610.001289
ORF1ab/nsp1136Y136YtaCtaT11B.1.3710.001122
ORF1ab/nsp1136Y136YtaCtaT11B.1.3750.00082
ORF1ab/nsp1136Y136NTacAac11B.1.3800.006623
ORF1ab/nsp1136Y136YtaCtaT11B.1.3970.004854
ORF1ab/nsp1136Y136YtaCtaT11B.1.3990.001934
ORF1ab/nsp1136Y136delTAC---11B.1.4270.00005
ORF1ab/nsp1136Y136delTAC---11B.1.4290.000024
ORF1ab/nsp1136Y136YtaCtaT11B.1.4360.001029
ORF1ab/nsp1136Y136YtaCtaT11B.1.4590.004082
ORF1ab/nsp1136Y136YtaCtaT11B.1.466.20.000391
ORF1ab/nsp1136Y136HTacCac11B.1.4780.011765
ORF1ab/nsp1136Y136YtaCtaT11B.1.5170.000427
ORF1ab/nsp1136Y136NTacAac11B.1.5260.000024
ORF1ab/nsp1136Y136NTacAac11B.1.5380.008065
ORF1ab/nsp1136Y136YtaCtaT11B.1.5450.014493
ORF1ab/nsp1136Y136HTacCac11B.1.5610.000397
ORF1ab/nsp1136Y136del2tACt--11B.1.5680.001111
ORF1ab/nsp1136Y136YtaCtaT11B.1.5720.025
ORF1ab/nsp1136Y136HTacCac11B.1.575.10.002439
ORF1ab/nsp1136Y136HTacCac11B.1.5820.000491
ORF1ab/nsp1136Y136DTacGac11B.1.6090.000479
ORF1ab/nsp1136Y136YtaCtaT11B.1.6090.000479
ORF1ab/nsp1136Y136YtaCtaT11B.1.617.10.000129
ORF1ab/nsp1136Y136FtACtTT11B.1.617.20.000004
ORF1ab/nsp1136Y136CtActGc11B.1.621.10.000506
ORF1ab/nsp1136Y136YtaCtaT11B.1.6270.00202
ORF1ab/nsp1136Y136NTacAac11B.4.70.010101
ORF1ab/nsp1136Y136YtaCtaT11B.400.000364
ORF1ab/nsp1136Y136YtaCtaT11C.160.00106
ORF1ab/nsp1136Y136delTAC---11C.170.055556
ORF1ab/nsp1136Y136delTAC---11C.350.000774
ORF1ab/nsp1136Y136NTacAac11P.10.000016
ORF1ab/nsp1136Y136YtaCtaT11P.1.10.000318
ORF1ab/nsp1136Y136YtaCtaT11P.1.100.000269
ORF1ab/nsp1136Y136YtaCtaT11P.1.150.000232
ORF1ab/nsp1136Y136FtActTc11P.1.170.000162
ORF1ab/nsp1136Y136YtaCtaT11Q.70.001111