CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 133

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1133G133GG133GsynggCggT554454600.984848662-664
ORF1ab/nsp1133G133GG133GsynggCggA5544620.0111833662-664
ORF1ab/nsp1133G133GG133GsynggCggG5544220.00396825662-664
ORF1ab/nsp1133G133CG133CnonsynGgcTgc4404390.997727662-664
ORF1ab/nsp1133G133CG133CnonsynGgCTgT44010.00227273662-664
ORF1ab/nsp1133G133VG133VnonsyngGcgTc3793740.986807662-664
ORF1ab/nsp1133G133VG133VnonsyngGCgTA37920.00527705662-664
ORF1ab/nsp1133G133VG133VnonsyngGCgTG37920.00527705662-664
ORF1ab/nsp1133G133VG133VnonsyngGCgTT37910.00263852662-664
ORF1ab/nsp1133G133DG133DnonsyngGcgAc82810.987805662-664
ORF1ab/nsp1133G133DG133DnonsyngGCgAT8210.0121951662-664
ORF1ab/nsp1133G133SG133SnonsynGgcAgc74720.972973662-664
ORF1ab/nsp1133G133SG133SnonsynGgCAgT7420.027027662-664
ORF1ab/nsp1133G133delG133deldelGGC---56561662-664
ORF1ab/nsp1133G133RG133RnonsynGgcCgc19180.947368662-664
ORF1ab/nsp1133G133RG133RnonsynGgCAgG1910.0526316662-664
ORF1ab/nsp1133G133FG133FnonsynGGcTTc760.857143662-664
ORF1ab/nsp1133G133FG133FnonsynGGCTTT710.142857662-664
ORF1ab/nsp1133G133del1G133del1delggCgg-661662-664
ORF1ab/nsp1133G133YG133YnonsynGGcTAc530.6662-664
ORF1ab/nsp1133G133YG133YnonsynGGCTAT520.4662-664
ORF1ab/nsp1133G133AG133AnonsyngGcgCc441662-664
ORF1ab/nsp1133G133LG133LnonsynGGcCTc410.25662-664
ORF1ab/nsp1133G133LG133LnonsynGGCCTT410.25662-664
ORF1ab/nsp1133G133LG133LnonsynGGCTTG410.25662-664
ORF1ab/nsp1133G133LG133LnonsynGGCTTA410.25662-664
ORF1ab/nsp1133G133XG133XnonsynGgCTgA320.666667662-664
ORF1ab/nsp1133G133XG133XnonsynGGCTAA310.333333662-664
ORF1ab/nsp1133G133WG133WnonsynGgCTgG221662-664
ORF1ab/nsp1133G133HG133HnonsynGGCCAT210.5662-664
ORF1ab/nsp1133G133HG133HnonsynGGcCAc210.5662-664
ORF1ab/nsp1133G133EG133EnonsyngGCgAA111662-664
ORF1ab/nsp1133G133MG133MnonsynGGCATG111662-664
ORF1ab/nsp1133G133IG133InonsynGGcATc111662-664
ORF1ab/nsp1133G133del2G133del2delGGc--c111662-664
ORF1ab/nsp1133G133KG133KnonsynGGCAAA111662-664

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1133G133GggCggT54605544All0.001044
ORF1ab/nsp1133G133GggCggA625544All0.000012
ORF1ab/nsp1133G133GggCggG225544All0.000004
ORF1ab/nsp1133G133GggCggT16141614B.1.351.50.967626
ORF1ab/nsp1133G133GggCggT12611265AY.40.001963
ORF1ab/nsp1133G133GggCggA41265AY.40.000006
ORF1ab/nsp1133G133CGgcTgc439440All0.000084
ORF1ab/nsp1133G133CGgCTgT1440All0
ORF1ab/nsp1133G133VgGcgTc374379All0.000072
ORF1ab/nsp1133G133VgGCgTG2379All0
ORF1ab/nsp1133G133VgGCgTA2379All0
ORF1ab/nsp1133G133VgGCgTT1379All0
ORF1ab/nsp1133G133GggCggT323324B.1.1.70.000289
ORF1ab/nsp1133G133GggCggA1324B.1.1.70.000001
ORF1ab/nsp1133G133GggCggT215239B.1.617.20.00081
ORF1ab/nsp1133G133GggCggA24239B.1.617.20.00009
ORF1ab/nsp1133G133VgGcgTc178178D.20.013357
ORF1ab/nsp1133G133GggCggT173174AY.440.001053
ORF1ab/nsp1133G133GggCggA1174AY.440.000006
ORF1ab/nsp1133G133GggCggT149149AY.1030.000925
ORF1ab/nsp1133G133GggCggT136149B.1.20.001198
ORF1ab/nsp1133G133GggCggG13149B.1.20.000114
ORF1ab/nsp1133G133GggCggT132132AY.30.001313
ORF1ab/nsp1133G133GggCggT119119AY.90.008044
ORF1ab/nsp1133G133GggCggT110110AY.940.048694
ORF1ab/nsp1133G133CGgcTgc104104AY.40.000162
ORF1ab/nsp1133G133DgGcgAc8182All0.000015
ORF1ab/nsp1133G133DgGCgAT182All0
ORF1ab/nsp1133G133GggCggT7681B.10.000696
ORF1ab/nsp1133G133GggCggA581B.10.000046
ORF1ab/nsp1133G133SGgcAgc7274All0.000014
ORF1ab/nsp1133G133SGgCAgT274All0
ORF1ab/nsp1133G133GggCggT7373P.10.00115
ORF1ab/nsp1133G133CGgcTgc7070B.1.1.70.000063
ORF1ab/nsp1133G133GggCggT5759AY.250.000343
ORF1ab/nsp1133G133GggCggA259AY.250.000012
ORF1ab/nsp1133G133delGGC---5656All0.000011
ORF1ab/nsp1133G133GggCggT4950AY.20.01745
ORF1ab/nsp1133G133GggCggA150AY.20.000356
ORF1ab/nsp1133G133GggCggT4550AY.430.000199
ORF1ab/nsp1133G133GggCggA550AY.430.000022
ORF1ab/nsp1133G133GggCggT4646AY.420.001851
ORF1ab/nsp1133G133GggCggT4141B.1.4290.000965
ORF1ab/nsp1133G133CGgcTgc3838AY.50.000785
ORF1ab/nsp1133G133VgGcgTc3636AY.40.000056
ORF1ab/nsp1133G133GggCggT3535B.1.4270.001767
ORF1ab/nsp1133G133GggCggT3434AY.1000.001564
ORF1ab/nsp1133G133VgGcgTc3333B.1.1.70.00003
ORF1ab/nsp1133G133GggCggT3030C.370.003482
ORF1ab/nsp1133G133GggCggT2929B.1.3510.000862
ORF1ab/nsp1133G133GggCggT2727AY.1020.000716
ORF1ab/nsp1133G133GggCggT2626B.1.2580.00173
ORF1ab/nsp1133G133GggCggT2424AE.60.923077
ORF1ab/nsp1133G133CGgcTgc2424B.1.617.20.00009
ORF1ab/nsp1133G133GggCggT2323AY.1190.000812
ORF1ab/nsp1133G133GggCggT2223AY.390.000544
ORF1ab/nsp1133G133GggCggA123AY.390.000025
ORF1ab/nsp1133G133SGgcAgc2022AY.40.000031
ORF1ab/nsp1133G133SGgCAgT222AY.40.000003
ORF1ab/nsp1133G133GggCggT2122AY.610.0022
ORF1ab/nsp1133G133GggCggA122AY.610.000105
ORF1ab/nsp1133G133RGgcCgc1819All0.000003
ORF1ab/nsp1133G133RGgCAgG119All0
ORF1ab/nsp1133G133GggCggT1719B.1.1770.000224
ORF1ab/nsp1133G133GggCggA219B.1.1770.000026
ORF1ab/nsp1133G133GggCggT1718B.1.10.000308
ORF1ab/nsp1133G133GggCggG118B.1.10.000018
ORF1ab/nsp1133G133GggCggT1717AY.4.20.000369
ORF1ab/nsp1133G133SGgcAgc1717B.1.1.70.000015
ORF1ab/nsp1133G133CGgcTgc1616AY.430.000071
ORF1ab/nsp1133G133GggCggT1616AY.460.001665
ORF1ab/nsp1133G133GggCggT1616AY.50.00033
ORF1ab/nsp1133G133GggCggT1616B.1.1600.000499
ORF1ab/nsp1133G133CGgcTgc1515AY.530.004313
ORF1ab/nsp1133G133GggCggT1314B.1.2340.001715
ORF1ab/nsp1133G133GggCggG114B.1.2340.000132
ORF1ab/nsp1133G133GggCggT1313AY.260.000368
ORF1ab/nsp1133G133DgGcgAc1313B.1.1.70.000012
ORF1ab/nsp1133G133delGGC---1313B.1.1.70.000012
ORF1ab/nsp1133G133CGgcTgc1313B.1.1470.009826
ORF1ab/nsp1133G133GggCggT1212AY.140.001056
ORF1ab/nsp1133G133GggCggT1111AY.120.10.003531
ORF1ab/nsp1133G133CGgcTgc1111AY.250.000066
ORF1ab/nsp1133G133GggCggT1111AY.980.000869
ORF1ab/nsp1133G133GggCggT1111B.1.36.10.012543
ORF1ab/nsp1133G133GggCggT910AY.200.00035
ORF1ab/nsp1133G133GggCggA110AY.200.000039
ORF1ab/nsp1133G133GggCggT910AY.290.000142
ORF1ab/nsp1133G133GggCggA110AY.290.000016
ORF1ab/nsp1133G133GggCggT1010AY.3.10.000853
ORF1ab/nsp1133G133DgGcgAc1010AY.40.000016
ORF1ab/nsp1133G133VgGcgTc910B.10.000082
ORF1ab/nsp1133G133VgGCgTA110B.10.000009
ORF1ab/nsp1133G133GggCggT1010B.1.1.290.103093
ORF1ab/nsp1133G133GggCggT99AY.1200.000335
ORF1ab/nsp1133G133VgGcgTc99AY.30.00009
ORF1ab/nsp1133G133CGgcTgc99AY.30.00009
ORF1ab/nsp1133G133DgGcgAc99AY.440.000055
ORF1ab/nsp1133G133CGgcTgc99AY.440.000055
ORF1ab/nsp1133G133GggCggT99AY.450.001095
ORF1ab/nsp1133G133GggCggT99B.1.5260.000212
ORF1ab/nsp1133G133GggCggT99B.1.5640.003833
ORF1ab/nsp1133G133VgGcgTc99B.1.617.20.000034
ORF1ab/nsp1133G133VgGcgTc88AY.430.000035
ORF1ab/nsp1133G133GggCggT78B.1.5960.00061
ORF1ab/nsp1133G133GggCggA18B.1.5960.000087
ORF1ab/nsp1133G133GggCggT88B.1.6210.000708
ORF1ab/nsp1133G133FGGcTTc67All0.000001
ORF1ab/nsp1133G133FGGCTTT17All0
ORF1ab/nsp1133G133VgGcgTc77AY.1030.000043
ORF1ab/nsp1133G133GggCggT77AY.98.10.000339
ORF1ab/nsp1133G133CGgcTgc77AY.98.10.000339
ORF1ab/nsp1133G133GggCggT77Q.40.003183
ORF1ab/nsp1133G133del1ggCgg-66All0.000001
ORF1ab/nsp1133G133CGgcTgc66AY.1030.000037
ORF1ab/nsp1133G133GggCggT66AY.1210.000812
ORF1ab/nsp1133G133GggCggT66AY.330.000401
ORF1ab/nsp1133G133GggCggT66AY.4.50.000645
ORF1ab/nsp1133G133GggCggT56AY.750.00028
ORF1ab/nsp1133G133GggCggA16AY.750.000056
ORF1ab/nsp1133G133DgGcgAc66B.1.1.1410.012072
ORF1ab/nsp1133G133GggCggT46B.1.1.3170.001647
ORF1ab/nsp1133G133GggCggA26B.1.1.3170.000823
ORF1ab/nsp1133G133GggCggT66B.1.1.5190.000238
ORF1ab/nsp1133G133GggCggT66Q.10.000758
ORF1ab/nsp1133G133YGGcTAc35All0.000001
ORF1ab/nsp1133G133YGGCTAT25All0
ORF1ab/nsp1133G133CGgcTgc55AY.1020.000133
ORF1ab/nsp1133G133GggCggT55AY.1160.001434
ORF1ab/nsp1133G133GggCggT55AY.160.001898
ORF1ab/nsp1133G133CGgcTgc55AY.4.20.000108
ORF1ab/nsp1133G133DgGcgAc55AY.430.000022
ORF1ab/nsp1133G133GggCggT55B0.000639
ORF1ab/nsp1133G133CGgcTgc55B.10.000046
ORF1ab/nsp1133G133CGgcTgc55B.1.10.000091
ORF1ab/nsp1133G133VgGcgTc55B.1.1770.000066
ORF1ab/nsp1133G133CGgcTgc55B.1.20.000044
ORF1ab/nsp1133G133delGGC---55B.1.5240.007032
ORF1ab/nsp1133G133GggCggT55B.1.5250.000566
ORF1ab/nsp1133G133GggCggT55B.1.5820.002453
ORF1ab/nsp1133G133GggCggT55P.1.10.001588
ORF1ab/nsp1133G133GggCggG340.166667
ORF1ab/nsp1133G133VgGcgTc240.111111
ORF1ab/nsp1133G133VgGCgTG240.111111
ORF1ab/nsp1133G133GggCggT140.055556
ORF1ab/nsp1133G133GggCggT44A0.001548
ORF1ab/nsp1133G133AgGcgCc44All0.000001
ORF1ab/nsp1133G133LGGCTTA14All0
ORF1ab/nsp1133G133LGGCTTG14All0
ORF1ab/nsp1133G133LGGCCTT14All0
ORF1ab/nsp1133G133LGGcCTc14All0
ORF1ab/nsp1133G133GggCggT44AY.1130.00057
ORF1ab/nsp1133G133VgGcgTc44AY.250.000024
ORF1ab/nsp1133G133GggCggT44AY.29.10.000882
ORF1ab/nsp1133G133GggCggT44AY.39.10.000158
ORF1ab/nsp1133G133VgGcgTc44AY.50.000083
ORF1ab/nsp1133G133GggCggT44AY.60.000165
ORF1ab/nsp1133G133CGgcTgc44AY.610.000419
ORF1ab/nsp1133G133CGgcTgc44AY.90.00027
ORF1ab/nsp1133G133GggCggT44AY.9.20.000147
ORF1ab/nsp1133G133CGgcTgc44AY.99.20.000369
ORF1ab/nsp1133G133VgGcgTc44B.1.10.000073
ORF1ab/nsp1133G133delGGC---44B.1.1.330.001684
ORF1ab/nsp1133G133delGGC---44B.1.1.3480.003185
ORF1ab/nsp1133G133GggCggT44B.1.1.5250.021858
ORF1ab/nsp1133G133RGgcCgc44B.1.1.70.000004
ORF1ab/nsp1133G133VgGcgTc34B.1.2210.000213
ORF1ab/nsp1133G133GggCggG24B.1.2210.000142
ORF1ab/nsp1133G133VgGCgTA14B.1.2210.000071
ORF1ab/nsp1133G133GggCggA14B.1.2210.000071
ORF1ab/nsp1133G133GggCggT14B.1.2210.000071
ORF1ab/nsp1133G133GggCggT44B.1.2430.000278
ORF1ab/nsp1133G133GggCggA44B.1.36.360.002408
ORF1ab/nsp1133G133GggCggT44B.1.3960.002823
ORF1ab/nsp1133G133CGgcTgc44B.1.5950.001044
ORF1ab/nsp1133G133SGgcAgc44B.1.617.20.000015
ORF1ab/nsp1133G133DgGcgAc44B.1.617.20.000015
ORF1ab/nsp1133G133RGgcCgc44D.20.0003
ORF1ab/nsp1133G133GggCggT44P.1.140.000191
ORF1ab/nsp1133G133CGgcTgc230.111111
ORF1ab/nsp1133G133CGgCTgT130.055556
ORF1ab/nsp1133G133XGgCTgA23All0
ORF1ab/nsp1133G133XGGCTAA13All0
ORF1ab/nsp1133G133DgGcgAc33AY.1020.00008
ORF1ab/nsp1133G133SGgcAgc33AY.1030.000019
ORF1ab/nsp1133G133GggCggT33AY.1060.001005
ORF1ab/nsp1133G133GggCggT33AY.1170.000254
ORF1ab/nsp1133G133CGgcTgc33AY.1190.000106
ORF1ab/nsp1133G133VgGcgTc33AY.200.000117
ORF1ab/nsp1133G133GggCggT23AY.230.000139
ORF1ab/nsp1133G133GggCggG13AY.230.00007
ORF1ab/nsp1133G133SGgcAgc33AY.250.000018
ORF1ab/nsp1133G133CGgcTgc33AY.260.000085
ORF1ab/nsp1133G133GggCggT33AY.270.000194
ORF1ab/nsp1133G133CGgcTgc33AY.300.001187
ORF1ab/nsp1133G133GggCggT33AY.360.000445
ORF1ab/nsp1133G133VgGcgTc33AY.390.000074
ORF1ab/nsp1133G133GggCggT33AY.46.60.000217
ORF1ab/nsp1133G133GggCggT33AY.470.000093
ORF1ab/nsp1133G133GggCggT33AY.5.40.00083
ORF1ab/nsp1133G133GggCggT33AY.540.000286
ORF1ab/nsp1133G133GggCggT33AY.730.001996
ORF1ab/nsp1133G133GggCggT33AY.740.000347
ORF1ab/nsp1133G133DgGcgAc33B.1.10.000054
ORF1ab/nsp1133G133GggCggT33B.1.1.2140.000166
ORF1ab/nsp1133G133GggCggT33B.1.1.2940.003797
ORF1ab/nsp1133G133GggCggT33B.1.1.3660.047619
ORF1ab/nsp1133G133GggCggT33B.1.1.4320.003797
ORF1ab/nsp1133G133VgGcgTc33B.1.1.5190.000119
ORF1ab/nsp1133G133AgGcgCc33B.1.1.70.000003
ORF1ab/nsp1133G133GggCggT33B.1.2100.006397
ORF1ab/nsp1133G133CGgcTgc33B.1.2340.000396
ORF1ab/nsp1133G133delGGC---33B.1.36.160.004274
ORF1ab/nsp1133G133CGgcTgc33B.1.4290.000071
ORF1ab/nsp1133G133DgGcgAc33B.1.6210.000266
ORF1ab/nsp1133G133VgGcgTc23B.4.50.02381
ORF1ab/nsp1133G133VgGCgTT13B.4.50.011905
ORF1ab/nsp1133G133CGgcTgc33C.30.10.020134
ORF1ab/nsp1133G133GggCggT33P.1.150.000697
ORF1ab/nsp1133G133GggCggT33Q.80.000495
ORF1ab/nsp1133G133YGGCTAT120.055556
ORF1ab/nsp1133G133YGGcTAc120.055556
ORF1ab/nsp1133G133DgGCgAT120.055556
ORF1ab/nsp1133G133DgGcgAc120.055556
ORF1ab/nsp1133G133GggCggT22A.2.50.000998
ORF1ab/nsp1133G133GggCggT22A.23.10.001408
ORF1ab/nsp1133G133WGgCTgG22All0
ORF1ab/nsp1133G133HGGcCAc12All0
ORF1ab/nsp1133G133HGGCCAT12All0
ORF1ab/nsp1133G133GggCggT22AY.1040.003968
ORF1ab/nsp1133G133GggCggT22AY.1050.001286
ORF1ab/nsp1133G133VgGcgTc22AY.1190.000071
ORF1ab/nsp1133G133SGgcAgc22AY.1190.000071
ORF1ab/nsp1133G133VgGcgTc22AY.1200.000074
ORF1ab/nsp1133G133SGgcAgc22AY.260.000057
ORF1ab/nsp1133G133SGgcAgc22AY.290.000032
ORF1ab/nsp1133G133DgGcgAc22AY.30.00002
ORF1ab/nsp1133G133SGgcAgc22AY.30.00002
ORF1ab/nsp1133G133GggCggT22AY.300.000791
ORF1ab/nsp1133G133CGgcTgc22AY.370.000632
ORF1ab/nsp1133G133CGgcTgc22AY.390.000049
ORF1ab/nsp1133G133VgGcgTc22AY.39.10.000079
ORF1ab/nsp1133G133delGGC---22AY.40.000003
ORF1ab/nsp1133G133RGgcCgc22AY.40.000003
ORF1ab/nsp1133G133GggCggT22AY.4.2.10.000298
ORF1ab/nsp1133G133delGGC---22AY.430.000009
ORF1ab/nsp1133G133SGgcAgc22AY.50.000041
ORF1ab/nsp1133G133GggCggT22AY.550.001835
ORF1ab/nsp1133G133CGgcTgc22AY.7.20.001119
ORF1ab/nsp1133G133SGgcAgc22AY.700.000417
ORF1ab/nsp1133G133GggCggT22AY.710.00095
ORF1ab/nsp1133G133GggCggT22AY.75.10.000361
ORF1ab/nsp1133G133RGgcCgc22B.1.1.10.000653
ORF1ab/nsp1133G133GggCggT22B.1.1.2100.011429
ORF1ab/nsp1133G133GggCggT22B.1.1.2220.000408
ORF1ab/nsp1133G133GggCggT22B.1.1.250.001137
ORF1ab/nsp1133G133GggCggT22B.1.1.2690.002706
ORF1ab/nsp1133G133GggCggT22B.1.1.3670.111111
ORF1ab/nsp1133G133GggCggT22B.1.1.3700.025316
ORF1ab/nsp1133G133GggCggT22B.1.1.630.000772
ORF1ab/nsp1133G133GggCggT22B.1.177.830.002963
ORF1ab/nsp1133G133del1ggCgg-22B.1.20.000018
ORF1ab/nsp1133G133GggCggT22B.1.214.20.001199
ORF1ab/nsp1133G133CGgcTgc22B.1.2210.000142
ORF1ab/nsp1133G133XGGCTAA12B.1.2210.000071
ORF1ab/nsp1133G133XGgCTgA12B.1.2210.000071
ORF1ab/nsp1133G133GggCggT22B.1.2410.001623
ORF1ab/nsp1133G133CGgcTgc22B.1.2430.000139
ORF1ab/nsp1133G133DgGcgAc22B.1.2430.000139
ORF1ab/nsp1133G133CGgcTgc22B.1.3510.000059
ORF1ab/nsp1133G133GggCggT22B.1.360.000292
ORF1ab/nsp1133G133VgGcgTc22B.1.4290.000047
ORF1ab/nsp1133G133DgGcgAc22B.1.5260.000047
ORF1ab/nsp1133G133GggCggT22B.1.5970.009259
ORF1ab/nsp1133G133GggCggA12B.1.617.10.000129
ORF1ab/nsp1133G133GggCggT12B.1.617.10.000129
ORF1ab/nsp1133G133YGGCTAT12B.1.617.20.000004
ORF1ab/nsp1133G133FGGCTTT12B.1.617.20.000004
ORF1ab/nsp1133G133HGGCCAT12B.1.617.20.000004
ORF1ab/nsp1133G133YGGcTAc12B.1.617.20.000004
ORF1ab/nsp1133G133LGGCCTT12B.1.617.20.000004
ORF1ab/nsp1133G133FGGcTTc12B.1.617.20.000004
ORF1ab/nsp1133G133LGGcCTc12B.1.617.20.000004
ORF1ab/nsp1133G133HGGcCAc12B.1.617.20.000004
ORF1ab/nsp1133G133CGgcTgc22B.1.6210.000177
ORF1ab/nsp1133G133CGgcTgc22D.20.00015
ORF1ab/nsp1133G133FGGcTTc22D.20.00015
ORF1ab/nsp1133G133GggCggT22N.30.011628
ORF1ab/nsp1133G133delGGC---22N.40.008511
ORF1ab/nsp1133G133delGGC---22N.60.014184
ORF1ab/nsp1133G133delGGC---22P.20.000373
ORF1ab/nsp1133G133GggCggT22P.20.000373
ORF1ab/nsp1133G133FGGcTTc110.055556
ORF1ab/nsp1133G133IGGcATc110.055556
ORF1ab/nsp1133G133MGGCATG110.055556
ORF1ab/nsp1133G133RGgCAgG110.055556
ORF1ab/nsp1133G133SGgcAgc110.055556
ORF1ab/nsp1133G133WGgCTgG110.055556
ORF1ab/nsp1133G133LGGCTTG110.055556
ORF1ab/nsp1133G133GggCggT11A.20.000662
ORF1ab/nsp1133G133CGgcTgc11A.2.50.000499
ORF1ab/nsp1133G133GggCggT11A.270.001656
ORF1ab/nsp1133G133GggCggT11AD.20.000219
ORF1ab/nsp1133G133CGgcTgc11AE.40.043478
ORF1ab/nsp1133G133GggCggT11AE.50.018519
ORF1ab/nsp1133G133EgGCgAA11All0
ORF1ab/nsp1133G133MGGCATG11All0
ORF1ab/nsp1133G133IGGcATc11All0
ORF1ab/nsp1133G133KGGCAAA11All0
ORF1ab/nsp1133G133del2GGc--c11All0
ORF1ab/nsp1133G133SGgcAgc11AU.20.002421
ORF1ab/nsp1133G133SGgcAgc11AY.1000.000046
ORF1ab/nsp1133G133VgGcgTc11AY.1000.000046
ORF1ab/nsp1133G133GggCggT11AY.1010.00049
ORF1ab/nsp1133G133DgGcgAc11AY.1030.000006
ORF1ab/nsp1133G133GggCggT11AY.1080.001103
ORF1ab/nsp1133G133DgGcgAc11AY.1090.00074
ORF1ab/nsp1133G133GggCggT11AY.1150.005208
ORF1ab/nsp1133G133delGGC---11AY.1160.000287
ORF1ab/nsp1133G133VgGcgTc11AY.1160.000287
ORF1ab/nsp1133G133VgGcgTc11AY.1180.000063
ORF1ab/nsp1133G133CGgcTgc11AY.1180.000063
ORF1ab/nsp1133G133GggCggT11AY.1180.000063
ORF1ab/nsp1133G133delGGC---11AY.120.000316
ORF1ab/nsp1133G133DgGcgAc11AY.1200.000037
ORF1ab/nsp1133G133VgGcgTc11AY.130.000161
ORF1ab/nsp1133G133GggCggT11AY.130.000161
ORF1ab/nsp1133G133DgGcgAc11AY.16.10.00047
ORF1ab/nsp1133G133GggCggA11AY.190.00114
ORF1ab/nsp1133G133VgGcgTc11AY.20.000356
ORF1ab/nsp1133G133CGgcTgc11AY.23.10.000417
ORF1ab/nsp1133G133delGGC---11AY.250.000006
ORF1ab/nsp1133G133DgGcgAc11AY.250.000006
ORF1ab/nsp1133G133VgGcgTc11AY.260.000028
ORF1ab/nsp1133G133VgGcgTc11AY.290.000016
ORF1ab/nsp1133G133GggCggT11AY.340.000097
ORF1ab/nsp1133G133CGgcTgc11AY.360.000148
ORF1ab/nsp1133G133VgGcgTc11AY.360.000148
ORF1ab/nsp1133G133delGGC---11AY.380.000499
ORF1ab/nsp1133G133GggCggT11AY.380.000499
ORF1ab/nsp1133G133DgGcgAc11AY.390.000025
ORF1ab/nsp1133G133SGgcAgc11AY.390.000025
ORF1ab/nsp1133G133CGgcTgc11AY.39.10.00004
ORF1ab/nsp1133G133FGGcTTc11AY.40.000002
ORF1ab/nsp1133G133VgGcgTc11AY.4.40.000409
ORF1ab/nsp1133G133delGGC---11AY.4.50.000107
ORF1ab/nsp1133G133CGgcTgc11AY.400.000964
ORF1ab/nsp1133G133KGGCAAA11AY.440.000006
ORF1ab/nsp1133G133CGgcTgc11AY.450.000122
ORF1ab/nsp1133G133CGgcTgc11AY.460.000104
ORF1ab/nsp1133G133GggCggT11AY.46.40.000165
ORF1ab/nsp1133G133CGgcTgc11AY.46.40.000165
ORF1ab/nsp1133G133GggCggT11AY.46.50.000198
ORF1ab/nsp1133G133DgGcgAc11AY.470.000031
ORF1ab/nsp1133G133RGgcCgc11AY.50.000021
ORF1ab/nsp1133G133CGgcTgc11AY.5.30.000337
ORF1ab/nsp1133G133SGgcAgc11AY.5.30.000337
ORF1ab/nsp1133G133GggCggT11AY.500.000799
ORF1ab/nsp1133G133VgGcgTc11AY.510.000909
ORF1ab/nsp1133G133SGgcAgc11AY.540.000095
ORF1ab/nsp1133G133DgGcgAc11AY.550.000917
ORF1ab/nsp1133G133GggCggT11AY.580.000907
ORF1ab/nsp1133G133GggCggT11AY.590.00053
ORF1ab/nsp1133G133CGgcTgc11AY.60.000041
ORF1ab/nsp1133G133DgGcgAc11AY.610.000105
ORF1ab/nsp1133G133RGgcCgc11AY.610.000105
ORF1ab/nsp1133G133GggCggT11AY.620.000436
ORF1ab/nsp1133G133SGgcAgc11AY.620.000436
ORF1ab/nsp1133G133GggCggT11AY.640.000595
ORF1ab/nsp1133G133delGGC---11AY.650.000533
ORF1ab/nsp1133G133GggCggT11AY.7.10.000113
ORF1ab/nsp1133G133CGgcTgc11AY.7.10.000113
ORF1ab/nsp1133G133GggCggT11AY.7.20.000559
ORF1ab/nsp1133G133CGgcTgc11AY.750.000056
ORF1ab/nsp1133G133DgGcgAc11AY.750.000056
ORF1ab/nsp1133G133VgGcgTc11AY.750.000056
ORF1ab/nsp1133G133VgGcgTc11AY.75.10.00018
ORF1ab/nsp1133G133CGgcTgc11AY.80.000606
ORF1ab/nsp1133G133GggCggT11AY.830.001724
ORF1ab/nsp1133G133GggCggT11AY.850.000427
ORF1ab/nsp1133G133DgGcgAc11AY.870.000833
ORF1ab/nsp1133G133CGgcTgc11AY.870.000833
ORF1ab/nsp1133G133VgGcgTc11AY.90.000068
ORF1ab/nsp1133G133delGGC---11AY.9.10.000084
ORF1ab/nsp1133G133SGgcAgc11AY.9.10.000084
ORF1ab/nsp1133G133CGgcTgc11AY.9.20.000037
ORF1ab/nsp1133G133GggCggT11AY.920.000287
ORF1ab/nsp1133G133delGGC---11AY.950.000761
ORF1ab/nsp1133G133GggCggT11AY.970.001701
ORF1ab/nsp1133G133GggCggT11AY.99.20.000092
ORF1ab/nsp1133G133del1ggCgg-11B0.000128
ORF1ab/nsp1133G133del1ggCgg-11B.10.000009
ORF1ab/nsp1133G133RGgcCgc11B.1.10.000018
ORF1ab/nsp1133G133CGgcTgc11B.1.1.1410.002012
ORF1ab/nsp1133G133GggCggT11B.1.1.1760.000439
ORF1ab/nsp1133G133CGgcTgc11B.1.1.1940.00495
ORF1ab/nsp1133G133GggCggG11B.1.1.1960.005714
ORF1ab/nsp1133G133GggCggT11B.1.1.1970.037037
ORF1ab/nsp1133G133GggCggT11B.1.1.2160.00089
ORF1ab/nsp1133G133GggCggT11B.1.1.2200.001859
ORF1ab/nsp1133G133VgGcgTc11B.1.1.2200.001859
ORF1ab/nsp1133G133SGgcAgc11B.1.1.2220.000204
ORF1ab/nsp1133G133GggCggT11B.1.1.2730.006757
ORF1ab/nsp1133G133GggCggT11B.1.1.2770.000759
ORF1ab/nsp1133G133VgGcgTc11B.1.1.2790.001121
ORF1ab/nsp1133G133VgGcgTc11B.1.1.2800.003086
ORF1ab/nsp1133G133VgGcgTc11B.1.1.2840.000107
ORF1ab/nsp1133G133VgGcgTc11B.1.1.2940.001266
ORF1ab/nsp1133G133GggCggT11B.1.1.3030.002762
ORF1ab/nsp1133G133GggCggT11B.1.1.3060.000438
ORF1ab/nsp1133G133VgGcgTc11B.1.1.3110.000358
ORF1ab/nsp1133G133CGgcTgc11B.1.1.3120.001912
ORF1ab/nsp1133G133GggCggT11B.1.1.3180.000302
ORF1ab/nsp1133G133SGgcAgc11B.1.1.3260.001761
ORF1ab/nsp1133G133GggCggT11B.1.1.3260.001761
ORF1ab/nsp1133G133GggCggT11B.1.1.330.000421
ORF1ab/nsp1133G133RGgcCgc11B.1.1.3690.000446
ORF1ab/nsp1133G133VgGcgTc11B.1.1.370.000193
ORF1ab/nsp1133G133GggCggT11B.1.1.390.00051
ORF1ab/nsp1133G133CGgcTgc11B.1.1.390.00051
ORF1ab/nsp1133G133GggCggA11B.1.1.3970.002252
ORF1ab/nsp1133G133GggCggT11B.1.1.3980.003226
ORF1ab/nsp1133G133DgGcgAc11B.1.1.4090.002833
ORF1ab/nsp1133G133GggCggT11B.1.1.4130.006897
ORF1ab/nsp1133G133GggCggT11B.1.1.4340.000349
ORF1ab/nsp1133G133CGgcTgc11B.1.1.440.00241
ORF1ab/nsp1133G133VgGcgTc11B.1.1.460.004367
ORF1ab/nsp1133G133GggCggT11B.1.1.500.000679
ORF1ab/nsp1133G133DgGcgAc11B.1.1.5190.00004
ORF1ab/nsp1133G133GggCggT11B.1.1.5230.001563
ORF1ab/nsp1133G133del1ggCgg-11B.1.1.70.000001
ORF1ab/nsp1133G133GggCggT11B.1.1.80.003584
ORF1ab/nsp1133G133CGgcTgc11B.1.1040.00369
ORF1ab/nsp1133G133GggCggT11B.1.1080.005814
ORF1ab/nsp1133G133GggCggT11B.1.1110.001175
ORF1ab/nsp1133G133VgGcgTc11B.1.1180.006711
ORF1ab/nsp1133G133GggCggT11B.1.1180.006711
ORF1ab/nsp1133G133CGgcTgc11B.1.1260.001276
ORF1ab/nsp1133G133GggCggT11B.1.1310.008772
ORF1ab/nsp1133G133VgGcgTc11B.1.1570.002985
ORF1ab/nsp1133G133GggCggT11B.1.1570.002985
ORF1ab/nsp1133G133CGgcTgc11B.1.1600.000031
ORF1ab/nsp1133G133delGGC---11B.1.160.70.002079
ORF1ab/nsp1133G133SGgcAgc11B.1.1770.000013
ORF1ab/nsp1133G133GggCggT11B.1.177.100.000878
ORF1ab/nsp1133G133GggCggT11B.1.177.210.000076
ORF1ab/nsp1133G133CGgcTgc11B.1.177.350.000691
ORF1ab/nsp1133G133delGGC---11B.1.177.40.000211
ORF1ab/nsp1133G133GggCggA11B.1.177.430.001477
ORF1ab/nsp1133G133GggCggT11B.1.177.560.000668
ORF1ab/nsp1133G133delGGC---11B.1.177.60.000977
ORF1ab/nsp1133G133VgGcgTc11B.1.177.60.000977
ORF1ab/nsp1133G133RGgcCgc11B.1.177.650.000665
ORF1ab/nsp1133G133VgGcgTc11B.1.177.730.000566
ORF1ab/nsp1133G133GggCggT11B.1.177.730.000566
ORF1ab/nsp1133G133VgGcgTc11B.1.177.740.015152
ORF1ab/nsp1133G133GggCggT11B.1.177.840.006667
ORF1ab/nsp1133G133VgGcgTc11B.1.177.90.001332
ORF1ab/nsp1133G133delGGC---11B.1.177.90.001332
ORF1ab/nsp1133G133LGGCTTA11B.1.2210.000071
ORF1ab/nsp1133G133DgGcgAc11B.1.2210.000071
ORF1ab/nsp1133G133FGGcTTc11B.1.2210.000071
ORF1ab/nsp1133G133YGGcTAc11B.1.2210.000071
ORF1ab/nsp1133G133del1ggCgg-11B.1.2210.000071
ORF1ab/nsp1133G133EgGCgAA11B.1.2210.000071
ORF1ab/nsp1133G133WGgCTgG11B.1.2210.000071
ORF1ab/nsp1133G133GggCggT11B.1.2320.000537
ORF1ab/nsp1133G133GggCggT11B.1.2400.000216
ORF1ab/nsp1133G133VgGcgTc11B.1.2430.00007
ORF1ab/nsp1133G133GggCggT11B.1.258.170.000104
ORF1ab/nsp1133G133CGgcTgc11B.1.258.170.000104
ORF1ab/nsp1133G133DgGcgAc11B.1.258.60.019608
ORF1ab/nsp1133G133VgGcgTc11B.1.2600.003344
ORF1ab/nsp1133G133GggCggT11B.1.2790.000514
ORF1ab/nsp1133G133CGgcTgc11B.1.3050.002151
ORF1ab/nsp1133G133GggCggT11B.1.3110.000275
ORF1ab/nsp1133G133CGgcTgc11B.1.3130.006579
ORF1ab/nsp1133G133VgGcgTc11B.1.3380.008621
ORF1ab/nsp1133G133VgGcgTc11B.1.3510.00003
ORF1ab/nsp1133G133SGgcAgc11B.1.3510.00003
ORF1ab/nsp1133G133delGGC---11B.1.360.000146
ORF1ab/nsp1133G133RGgcCgc11B.1.360.000146
ORF1ab/nsp1133G133GggCggT11B.1.36.100.004785
ORF1ab/nsp1133G133VgGcgTc11B.1.36.160.001425
ORF1ab/nsp1133G133GggCggT11B.1.36.170.000494
ORF1ab/nsp1133G133VgGcgTc11B.1.36.210.00216
ORF1ab/nsp1133G133GggCggT11B.1.36.210.00216
ORF1ab/nsp1133G133GggCggT11B.1.36.290.000517
ORF1ab/nsp1133G133GggCggT11B.1.36.310.001751
ORF1ab/nsp1133G133GggCggT11B.1.36.380.001642
ORF1ab/nsp1133G133GggCggT11B.1.4090.000781
ORF1ab/nsp1133G133GggCggT11B.1.4110.003704
ORF1ab/nsp1133G133GggCggT11B.1.4200.010417
ORF1ab/nsp1133G133DgGcgAc11B.1.4270.00005
ORF1ab/nsp1133G133VgGcgTc11B.1.4270.00005
ORF1ab/nsp1133G133delGGC---11B.1.4270.00005
ORF1ab/nsp1133G133CGgcTgc11B.1.4280.00102
ORF1ab/nsp1133G133delGGC---11B.1.4290.000024
ORF1ab/nsp1133G133VgGcgTc11B.1.4340.052632
ORF1ab/nsp1133G133CGgcTgc11B.1.438.10.000107
ORF1ab/nsp1133G133GggCggT11B.1.466.20.000391
ORF1ab/nsp1133G133CGgcTgc11B.1.4970.000315
ORF1ab/nsp1133G133CGgcTgc11B.1.5250.000113
ORF1ab/nsp1133G133VgGcgTc11B.1.5260.000024
ORF1ab/nsp1133G133GggCggT11B.1.5270.003704
ORF1ab/nsp1133G133GggCggT11B.1.5300.007143
ORF1ab/nsp1133G133GggCggT11B.1.5700.002941
ORF1ab/nsp1133G133GggCggT11B.1.5950.000261
ORF1ab/nsp1133G133CGgcTgc11B.1.595.10.005848
ORF1ab/nsp1133G133VgGcgTc11B.1.5960.000087
ORF1ab/nsp1133G133GggCggT11B.1.5990.00365
ORF1ab/nsp1133G133GggCggT11B.1.6030.010638
ORF1ab/nsp1133G133CGgcTgc11B.1.617.10.000129
ORF1ab/nsp1133G133XGgCTgA11B.1.617.10.000129
ORF1ab/nsp1133G133del2GGc--c11B.1.617.20.000004
ORF1ab/nsp1133G133GggCggT11B.1.617.30.002985
ORF1ab/nsp1133G133GggCggT11B.1.6270.00202
ORF1ab/nsp1133G133CGgcTgc11B.1.6270.00202
ORF1ab/nsp1133G133GggCggT11B.1.6370.000073
ORF1ab/nsp1133G133VgGcgTc11B.1.6370.000073
ORF1ab/nsp1133G133DgGcgAc11B.1.770.045455
ORF1ab/nsp1133G133CGgcTgc11B.230.002924
ORF1ab/nsp1133G133VgGcgTc11B.290.003509
ORF1ab/nsp1133G133GggCggT11B.30.000831
ORF1ab/nsp1133G133VgGcgTc11B.350.007812
ORF1ab/nsp1133G133GggCggT11B.4.50.011905
ORF1ab/nsp1133G133SGgcAgc11B.410.008
ORF1ab/nsp1133G133CGgcTgc11B.60.00091
ORF1ab/nsp1133G133delGGC---11C.170.055556
ORF1ab/nsp1133G133GggCggT11C.300.001727
ORF1ab/nsp1133G133delGGC---11C.350.000774
ORF1ab/nsp1133G133DgGcgAc11C.370.000116
ORF1ab/nsp1133G133VgGcgTc11D.30.005917
ORF1ab/nsp1133G133VgGcgTc11P.10.000016
ORF1ab/nsp1133G133CGgcTgc11P.10.000016
ORF1ab/nsp1133G133GggCggT11P.1.120.000484
ORF1ab/nsp1133G133CGgcTgc11P.1.130.000898
ORF1ab/nsp1133G133GggCggT11P.1.170.000162
ORF1ab/nsp1133G133GggCggT11P.30.001595
ORF1ab/nsp1133G133AgGcgCc11Q.10.000126
ORF1ab/nsp1133G133GggCggT11Q.20.000613
ORF1ab/nsp1133G133VgGcgTc11Q.40.000455
ORF1ab/nsp1133G133GggCggT11R.10.00009
ORF1ab/nsp1133G133GggCggT11R.20.014493
ORF1ab/nsp1133G133VgGcgTc11U.10.012821