CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 128 & Codon = aaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1128N128NN128NsynaaTaaC2882881647-649

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1128N128NaaTaaC288288All0.000055
ORF1ab/nsp1128N128NaaTaaC6363AY.40.000098
ORF1ab/nsp1128N128NaaTaaC3232B.1.1.70.000029
ORF1ab/nsp1128N128NaaTaaC1919B.1.20.000167
ORF1ab/nsp1128N128NaaTaaC1414AY.390.000346
ORF1ab/nsp1128N128NaaTaaC1111B.1.1.2220.002244
ORF1ab/nsp1128N128NaaTaaC1111B.1.1770.000145
ORF1ab/nsp1128N128NaaTaaC99B.1.10.000163
ORF1ab/nsp1128N128NaaTaaC99B.1.4270.000454
ORF1ab/nsp1128N128NaaTaaC99B.1.617.20.000034
ORF1ab/nsp1128N128NaaTaaC88AY.230.000558
ORF1ab/nsp1128N128NaaTaaC77AY.30.00007
ORF1ab/nsp1128N128NaaTaaC77AY.430.000031
ORF1ab/nsp1128N128NaaTaaC77AY.440.000043
ORF1ab/nsp1128N128NaaTaaC66AY.98.10.000291
ORF1ab/nsp1128N128NaaTaaC55A.300.714286
ORF1ab/nsp1128N128NaaTaaC55B.10.000046
ORF1ab/nsp1128N128NaaTaaC44AD.20.000876
ORF1ab/nsp1128N128NaaTaaC44AY.1130.00057
ORF1ab/nsp1128N128NaaTaaC44B.1.6210.000354
ORF1ab/nsp1128N128NaaTaaC33AY.1030.000019
ORF1ab/nsp1128N128NaaTaaC33AY.260.000085
ORF1ab/nsp1128N128NaaTaaC33AY.650.001599
ORF1ab/nsp1128N128NaaTaaC33B.1.1.3170.001235
ORF1ab/nsp1128N128NaaTaaC33B.1.1600.000094
ORF1ab/nsp1128N128NaaTaaC22AY.100.00106
ORF1ab/nsp1128N128NaaTaaC22AY.250.000012
ORF1ab/nsp1128N128NaaTaaC22AY.4.20.000043
ORF1ab/nsp1128N128NaaTaaC22AY.420.00008
ORF1ab/nsp1128N128NaaTaaC22AY.450.000243
ORF1ab/nsp1128N128NaaTaaC22B.1.1.280.000622
ORF1ab/nsp1128N128NaaTaaC22B.1.36.80.002
ORF1ab/nsp1128N128NaaTaaC22B.1.5260.000047
ORF1ab/nsp1128N128NaaTaaC11A.20.000662
ORF1ab/nsp1128N128NaaTaaC11AY.1170.000085
ORF1ab/nsp1128N128NaaTaaC11AY.1200.000037
ORF1ab/nsp1128N128NaaTaaC11AY.200.000039
ORF1ab/nsp1128N128NaaTaaC11AY.360.000148
ORF1ab/nsp1128N128NaaTaaC11AY.460.000104
ORF1ab/nsp1128N128NaaTaaC11AY.470.000031
ORF1ab/nsp1128N128NaaTaaC11AY.50.000021
ORF1ab/nsp1128N128NaaTaaC11AY.600.000938
ORF1ab/nsp1128N128NaaTaaC11AY.75.10.00018
ORF1ab/nsp1128N128NaaTaaC11AY.770.001127
ORF1ab/nsp1128N128NaaTaaC11AY.80.000606
ORF1ab/nsp1128N128NaaTaaC11AY.9.20.000037
ORF1ab/nsp1128N128NaaTaaC11B.1.1.2790.001121
ORF1ab/nsp1128N128NaaTaaC11B.1.1.2850.006536
ORF1ab/nsp1128N128NaaTaaC11B.1.1.4290.004608
ORF1ab/nsp1128N128NaaTaaC11B.1.177.40.000211
ORF1ab/nsp1128N128NaaTaaC11B.1.2210.000071
ORF1ab/nsp1128N128NaaTaaC11B.1.2410.000812
ORF1ab/nsp1128N128NaaTaaC11B.1.3110.000275
ORF1ab/nsp1128N128NaaTaaC11B.1.3510.00003
ORF1ab/nsp1128N128NaaTaaC11B.1.4160.001269
ORF1ab/nsp1128N128NaaTaaC11B.1.5650.00081

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.