CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 128

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1128N128NN128NsynaaTaaC2882881647-649
ORF1ab/nsp1128N128DN128DnonsynAatGat1181181647-649
ORF1ab/nsp1128N128SN128SnonsynaAtaGt95951647-649
ORF1ab/nsp1128N128delN128deldelAAT---48481647-649
ORF1ab/nsp1128N128TN128TnonsynaAtaCt27271647-649
ORF1ab/nsp1128N128YN128YnonsynAatTat18181647-649
ORF1ab/nsp1128N128IN128InonsynaAtaTt13131647-649
ORF1ab/nsp1128N128KN128KnonsynaaTaaA11100.909091647-649
ORF1ab/nsp1128N128KN128KnonsynaaTaaG1110.0909091647-649
ORF1ab/nsp1128N128HN128HnonsynAatCat10101647-649
ORF1ab/nsp1128N128del1N128del1delaaTaa-1040.4647-649
ORF1ab/nsp1128N128del1N128del1delAaT-aN1040.4647-649
ORF1ab/nsp1128N128del1N128del1delAat-at1020.2647-649
ORF1ab/nsp1128N128del2N128del2delaATa--441647-649
ORF1ab/nsp1128N128GN128GnonsynAAtGGt331647-649
ORF1ab/nsp1128N128LN128LnonsynAATCTG221647-649
ORF1ab/nsp1128N128XN128XnonsynAaTTaA221647-649
ORF1ab/nsp1128N128EN128EnonsynAaTGaA221647-649
ORF1ab/nsp1128N128VN128VnonsynAAtGTt221647-649
ORF1ab/nsp1128N128QN128QnonsynAaTCaA111647-649

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1128N128NaaTaaC288288All0.000055
ORF1ab/nsp1128N128DAatGat118118All0.000023
ORF1ab/nsp1128N128SaAtaGt9595All0.000018
ORF1ab/nsp1128N128NaaTaaC6363AY.40.000098
ORF1ab/nsp1128N128DAatGat5656AY.40.000087
ORF1ab/nsp1128N128delAAT---4848All0.000009
ORF1ab/nsp1128N128NaaTaaC3232B.1.1.70.000029
ORF1ab/nsp1128N128TaAtaCt2727All0.000005
ORF1ab/nsp1128N128SaAtaGt2323AY.1030.000143
ORF1ab/nsp1128N128NaaTaaC1919B.1.20.000167
ORF1ab/nsp1128N128YAatTat1818All0.000003
ORF1ab/nsp1128N128NaaTaaC1414AY.390.000346
ORF1ab/nsp1128N128SaAtaGt1414B.1.1770.000184
ORF1ab/nsp1128N128IaAtaTt1313All0.000002
ORF1ab/nsp1128N128TaAtaCt1212AY.40.000019
ORF1ab/nsp1128N128DAatGat1212AY.440.000073
ORF1ab/nsp1128N128SaAtaGt1212B.1.1.70.000011
ORF1ab/nsp1128N128KaaTaaA1011All0.000002
ORF1ab/nsp1128N128KaaTaaG111All0
ORF1ab/nsp1128N128DAatGat1111B.10.000101
ORF1ab/nsp1128N128NaaTaaC1111B.1.1.2220.002244
ORF1ab/nsp1128N128NaaTaaC1111B.1.1770.000145
ORF1ab/nsp1128N128HAatCat1010All0.000002
ORF1ab/nsp1128N128del1AaT-aN410All0.000001
ORF1ab/nsp1128N128del1aaTaa-410All0.000001
ORF1ab/nsp1128N128del1Aat-at210All0
ORF1ab/nsp1128N128SaAtaGt1010AY.40.000016
ORF1ab/nsp1128N128NaaTaaC99B.1.10.000163
ORF1ab/nsp1128N128NaaTaaC99B.1.4270.000454
ORF1ab/nsp1128N128SaAtaGt99B.1.617.20.000034
ORF1ab/nsp1128N128NaaTaaC99B.1.617.20.000034
ORF1ab/nsp1128N128NaaTaaC88AY.230.000558
ORF1ab/nsp1128N128NaaTaaC77AY.30.00007
ORF1ab/nsp1128N128NaaTaaC77AY.430.000031
ORF1ab/nsp1128N128NaaTaaC77AY.440.000043
ORF1ab/nsp1128N128delAAT---77B.1.1.70.000006
ORF1ab/nsp1128N128NaaTaaC66AY.98.10.000291
ORF1ab/nsp1128N128TaAtaCt66AY.99.20.000553
ORF1ab/nsp1128N128NaaTaaC55A.300.714286
ORF1ab/nsp1128N128SaAtaGt55AY.470.000156
ORF1ab/nsp1128N128NaaTaaC55B.10.000046
ORF1ab/nsp1128N128NaaTaaC44AD.20.000876
ORF1ab/nsp1128N128del2aATa--44All0.000001
ORF1ab/nsp1128N128NaaTaaC44AY.1130.00057
ORF1ab/nsp1128N128YAatTat44AY.40.000006
ORF1ab/nsp1128N128delAAT---44B.1.1.330.001684
ORF1ab/nsp1128N128delAAT---44B.1.1.3480.003185
ORF1ab/nsp1128N128NaaTaaC44B.1.6210.000354
ORF1ab/nsp1128N128KaaTaaA330.166667
ORF1ab/nsp1128N128GAAtGGt33All0.000001
ORF1ab/nsp1128N128NaaTaaC33AY.1030.000019
ORF1ab/nsp1128N128NaaTaaC33AY.260.000085
ORF1ab/nsp1128N128DAatGat33AY.30.00003
ORF1ab/nsp1128N128IaAtaTt33AY.40.000005
ORF1ab/nsp1128N128DAatGat33AY.430.000013
ORF1ab/nsp1128N128NaaTaaC33AY.650.001599
ORF1ab/nsp1128N128SaAtaGt33B.10.000027
ORF1ab/nsp1128N128SaAtaGt33B.1.10.000054
ORF1ab/nsp1128N128NaaTaaC33B.1.1.3170.001235
ORF1ab/nsp1128N128NaaTaaC33B.1.1600.000094
ORF1ab/nsp1128N128DAatGat33B.1.3560.005181
ORF1ab/nsp1128N128HAatCat33B.1.5960.000261
ORF1ab/nsp1128N128DAatGat33B.1.617.20.000011
ORF1ab/nsp1128N128DAatGat220.111111
ORF1ab/nsp1128N128EAaTGaA220.111111
ORF1ab/nsp1128N128LAATCTG22All0
ORF1ab/nsp1128N128EAaTGaA22All0
ORF1ab/nsp1128N128VAAtGTt22All0
ORF1ab/nsp1128N128XAaTTaA22All0
ORF1ab/nsp1128N128NaaTaaC22AY.100.00106
ORF1ab/nsp1128N128TaAtaCt22AY.250.000012
ORF1ab/nsp1128N128NaaTaaC22AY.250.000012
ORF1ab/nsp1128N128DAatGat22AY.290.000032
ORF1ab/nsp1128N128delAAT---22AY.40.000003
ORF1ab/nsp1128N128NaaTaaC22AY.4.20.000043
ORF1ab/nsp1128N128DAatGat22AY.4.2.10.000298
ORF1ab/nsp1128N128NaaTaaC22AY.420.00008
ORF1ab/nsp1128N128delAAT---22AY.430.000009
ORF1ab/nsp1128N128IaAtaTt22AY.440.000012
ORF1ab/nsp1128N128NaaTaaC22AY.450.000243
ORF1ab/nsp1128N128delAAT---22AY.46.60.000144
ORF1ab/nsp1128N128DAatGat22AY.950.001522
ORF1ab/nsp1128N128del1AaT-aN22B.1.10.000036
ORF1ab/nsp1128N128NaaTaaC22B.1.1.280.000622
ORF1ab/nsp1128N128SaAtaGt22B.1.1.3180.000604
ORF1ab/nsp1128N128TaAtaCt22B.1.1.70.000002
ORF1ab/nsp1128N128KaaTaaA22B.1.1.70.000002
ORF1ab/nsp1128N128DAatGat22B.1.1600.000062
ORF1ab/nsp1128N128YAatTat22B.1.20.000018
ORF1ab/nsp1128N128delAAT---22B.1.20.000018
ORF1ab/nsp1128N128del1Aat-at12B.1.20.000009
ORF1ab/nsp1128N128del1aaTaa-12B.1.20.000009
ORF1ab/nsp1128N128VAAtGTt22B.1.2350.005038
ORF1ab/nsp1128N128NaaTaaC22B.1.36.80.002
ORF1ab/nsp1128N128NaaTaaC22B.1.5260.000047
ORF1ab/nsp1128N128TaAtaCt22B.1.617.20.000008
ORF1ab/nsp1128N128delAAT---22N.40.008511
ORF1ab/nsp1128N128delAAT---22N.60.014184
ORF1ab/nsp1128N128delAAT---22P.20.000373
ORF1ab/nsp1128N128QAaTCaA110.055556
ORF1ab/nsp1128N128HAatCat110.055556
ORF1ab/nsp1128N128YAatTat110.055556
ORF1ab/nsp1128N128XAaTTaA110.055556
ORF1ab/nsp1128N128HAatCat11A.10.000282
ORF1ab/nsp1128N128NaaTaaC11A.20.000662
ORF1ab/nsp1128N128QAaTCaA11All0
ORF1ab/nsp1128N128DAatGat11AY.1020.000027
ORF1ab/nsp1128N128SaAtaGt11AY.1020.000027
ORF1ab/nsp1128N128IaAtaTt11AY.1030.000006
ORF1ab/nsp1128N128YAatTat11AY.1030.000006
ORF1ab/nsp1128N128DAatGat11AY.1130.000142
ORF1ab/nsp1128N128delAAT---11AY.1160.000287
ORF1ab/nsp1128N128NaaTaaC11AY.1170.000085
ORF1ab/nsp1128N128delAAT---11AY.120.000316
ORF1ab/nsp1128N128NaaTaaC11AY.1200.000037
ORF1ab/nsp1128N128NaaTaaC11AY.200.000039
ORF1ab/nsp1128N128delAAT---11AY.250.000006
ORF1ab/nsp1128N128GAAtGGt11AY.250.000006
ORF1ab/nsp1128N128LAATCTG11AY.250.000006
ORF1ab/nsp1128N128IaAtaTt11AY.250.000006
ORF1ab/nsp1128N128SaAtaGt11AY.250.000006
ORF1ab/nsp1128N128DAatGat11AY.250.000006
ORF1ab/nsp1128N128YAatTat11AY.250.000006
ORF1ab/nsp1128N128YAatTat11AY.290.000016
ORF1ab/nsp1128N128SaAtaGt11AY.3.10.000085
ORF1ab/nsp1128N128HAatCat11AY.300.000396
ORF1ab/nsp1128N128YAatTat11AY.330.000067
ORF1ab/nsp1128N128NaaTaaC11AY.360.000148
ORF1ab/nsp1128N128delAAT---11AY.380.000499
ORF1ab/nsp1128N128TaAtaCt11AY.390.000025
ORF1ab/nsp1128N128delAAT---11AY.39.10.00004
ORF1ab/nsp1128N128KaaTaaA11AY.40.000002
ORF1ab/nsp1128N128SaAtaGt11AY.4.20.000022
ORF1ab/nsp1128N128DAatGat11AY.4.20.000022
ORF1ab/nsp1128N128SaAtaGt11AY.4.50.000107
ORF1ab/nsp1128N128delAAT---11AY.4.50.000107
ORF1ab/nsp1128N128SaAtaGt11AY.420.00004
ORF1ab/nsp1128N128DAatGat11AY.420.00004
ORF1ab/nsp1128N128SaAtaGt11AY.430.000004
ORF1ab/nsp1128N128YAatTat11AY.430.000004
ORF1ab/nsp1128N128TaAtaCt11AY.430.000004
ORF1ab/nsp1128N128HAatCat11AY.430.000004
ORF1ab/nsp1128N128SaAtaGt11AY.440.000006
ORF1ab/nsp1128N128LAATCTG11AY.440.000006
ORF1ab/nsp1128N128del2aATa--11AY.440.000006
ORF1ab/nsp1128N128YAatTat11AY.440.000006
ORF1ab/nsp1128N128NaaTaaC11AY.460.000104
ORF1ab/nsp1128N128NaaTaaC11AY.470.000031
ORF1ab/nsp1128N128NaaTaaC11AY.50.000021
ORF1ab/nsp1128N128NaaTaaC11AY.600.000938
ORF1ab/nsp1128N128DAatGat11AY.610.000105
ORF1ab/nsp1128N128HAatCat11AY.610.000105
ORF1ab/nsp1128N128delAAT---11AY.650.000533
ORF1ab/nsp1128N128DAatGat11AY.70.000196
ORF1ab/nsp1128N128SaAtaGt11AY.750.000056
ORF1ab/nsp1128N128NaaTaaC11AY.75.10.00018
ORF1ab/nsp1128N128NaaTaaC11AY.770.001127
ORF1ab/nsp1128N128NaaTaaC11AY.80.000606
ORF1ab/nsp1128N128delAAT---11AY.9.10.000084
ORF1ab/nsp1128N128NaaTaaC11AY.9.20.000037
ORF1ab/nsp1128N128delAAT---11AY.950.000761
ORF1ab/nsp1128N128DAatGat11AY.980.000079
ORF1ab/nsp1128N128SaAtaGt11AY.98.10.000048
ORF1ab/nsp1128N128SaAtaGt11AY.99.20.000092
ORF1ab/nsp1128N128GAAtGGt11B.10.000009
ORF1ab/nsp1128N128delAAT---11B.10.000009
ORF1ab/nsp1128N128del1Aat-at11B.10.000009
ORF1ab/nsp1128N128KaaTaaA11B.10.000009
ORF1ab/nsp1128N128KaaTaaG11B.1.10.000018
ORF1ab/nsp1128N128IaAtaTt11B.1.10.000018
ORF1ab/nsp1128N128IaAtaTt11B.1.1.2220.000204
ORF1ab/nsp1128N128DAatGat11B.1.1.2300.009174
ORF1ab/nsp1128N128NaaTaaC11B.1.1.2790.001121
ORF1ab/nsp1128N128NaaTaaC11B.1.1.2850.006536
ORF1ab/nsp1128N128del1aaTaa-11B.1.1.3180.000302
ORF1ab/nsp1128N128NaaTaaC11B.1.1.4290.004608
ORF1ab/nsp1128N128SaAtaGt11B.1.1.5190.00004
ORF1ab/nsp1128N128del1aaTaa-11B.1.1.70.000001
ORF1ab/nsp1128N128IaAtaTt11B.1.1.70.000001
ORF1ab/nsp1128N128YAatTat11B.1.1.70.000001
ORF1ab/nsp1128N128DAatGat11B.1.1.70.000001
ORF1ab/nsp1128N128YAatTat11B.1.1600.000031
ORF1ab/nsp1128N128DAatGat11B.1.1770.000013
ORF1ab/nsp1128N128NaaTaaC11B.1.177.40.000211
ORF1ab/nsp1128N128IaAtaTt11B.1.177.40.000211
ORF1ab/nsp1128N128delAAT---11B.1.177.40.000211
ORF1ab/nsp1128N128del2aATa--11B.1.177.90.001332
ORF1ab/nsp1128N128SaAtaGt11B.1.20.000009
ORF1ab/nsp1128N128del2aATa--11B.1.20.000009
ORF1ab/nsp1128N128IaAtaTt11B.1.20.000009
ORF1ab/nsp1128N128delAAT---11B.1.2110.025
ORF1ab/nsp1128N128del2aATa--11B.1.2210.000071
ORF1ab/nsp1128N128KaaTaaA11B.1.2210.000071
ORF1ab/nsp1128N128NaaTaaC11B.1.2210.000071
ORF1ab/nsp1128N128XAaTTaA11B.1.2210.000071
ORF1ab/nsp1128N128YAatTat11B.1.2210.000071
ORF1ab/nsp1128N128NaaTaaC11B.1.2410.000812
ORF1ab/nsp1128N128NaaTaaC11B.1.3110.000275
ORF1ab/nsp1128N128NaaTaaC11B.1.3510.00003
ORF1ab/nsp1128N128DAatGat11B.1.3510.00003
ORF1ab/nsp1128N128del1AaT-aN11B.1.3550.011111
ORF1ab/nsp1128N128delAAT---11B.1.360.000146
ORF1ab/nsp1128N128NaaTaaC11B.1.4160.001269
ORF1ab/nsp1128N128DAatGat11B.1.4270.00005
ORF1ab/nsp1128N128delAAT---11B.1.4270.00005
ORF1ab/nsp1128N128delAAT---11B.1.4290.000024
ORF1ab/nsp1128N128HAatCat11B.1.4290.000024
ORF1ab/nsp1128N128TaAtaCt11B.1.5260.000024
ORF1ab/nsp1128N128NaaTaaC11B.1.5650.00081
ORF1ab/nsp1128N128del1AaT-aN11B.1.5950.000261
ORF1ab/nsp1128N128DAatGat11B.1.5960.000087
ORF1ab/nsp1128N128delAAT---11B.1.617.20.000004
ORF1ab/nsp1128N128HAatCat11B.1.617.20.000004
ORF1ab/nsp1128N128GAAtGGt11B.1.617.20.000004
ORF1ab/nsp1128N128del1aaTaa-11B.1.617.20.000004
ORF1ab/nsp1128N128KaaTaaA11B.1.617.20.000004
ORF1ab/nsp1128N128KaaTaaA11B.400.000364
ORF1ab/nsp1128N128delAAT---11B.400.000364
ORF1ab/nsp1128N128DAatGat11B.6.60.000889
ORF1ab/nsp1128N128delAAT---11C.170.055556
ORF1ab/nsp1128N128delAAT---11C.350.000774
ORF1ab/nsp1128N128DAatGat11D.20.000075
ORF1ab/nsp1128N128DAatGat11P.10.000016
ORF1ab/nsp1128N128YAatTat11P.10.000016
ORF1ab/nsp1128N128YAatTat11P.1.120.000484
ORF1ab/nsp1128N128IaAtaTt11P.1.170.000162
ORF1ab/nsp1128N128SaAtaGt11Q.30.000145