CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 119

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1119R119RR119RsyncgCcgT203820050.983808620-622
ORF1ab/nsp1119R119RR119RsyncgCcgA2038240.0117763620-622
ORF1ab/nsp1119R119RR119RsyncgCcgG203890.00441609620-622
ORF1ab/nsp1119R119CR119CnonsynCgcTgc107610750.999071620-622
ORF1ab/nsp1119R119CR119CnonsynCgCTgT107610.000929368620-622
ORF1ab/nsp1119R119HR119HnonsyncGccAc9219211620-622
ORF1ab/nsp1119R119delR119deldelCGC---54541620-622
ORF1ab/nsp1119R119LR119LnonsyncGccTc41411620-622
ORF1ab/nsp1119R119SR119SnonsynCgcAgc23231620-622
ORF1ab/nsp1119R119PR119PnonsyncGccCc320.666667620-622
ORF1ab/nsp1119R119PR119PnonsyncGCcCG310.333333620-622
ORF1ab/nsp1119R119YR119YnonsynCGCTAT221620-622
ORF1ab/nsp1119R119TR119TnonsynCGCACT111620-622
ORF1ab/nsp1119R119GR119GnonsynCgcGgc111620-622
ORF1ab/nsp1119R119del2R119del2delCGC--G111620-622

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1119R119RcgCcgT20052038All0.000383
ORF1ab/nsp1119R119RcgCcgA242038All0.000005
ORF1ab/nsp1119R119RcgCcgG92038All0.000002
ORF1ab/nsp1119R119CCgcTgc10751076All0.000206
ORF1ab/nsp1119R119CCgCTgT11076All0
ORF1ab/nsp1119R119HcGccAc921921All0.000176
ORF1ab/nsp1119R119RcgCcgT791795B.1.1.70.000708
ORF1ab/nsp1119R119RcgCcgA4795B.1.1.70.000004
ORF1ab/nsp1119R119CCgcTgc385385AY.260.010899
ORF1ab/nsp1119R119RcgCcgT253253B.1.1490.866438
ORF1ab/nsp1119R119HcGccAc208208B.1.1.70.000186
ORF1ab/nsp1119R119HcGccAc167167AY.260.004728
ORF1ab/nsp1119R119RcgCcgT112112AY.340.01086
ORF1ab/nsp1119R119RcgCcgT107107AY.430.000474
ORF1ab/nsp1119R119CCgcTgc105105AY.1110.019231
ORF1ab/nsp1119R119HcGccAc100100AY.1030.000621
ORF1ab/nsp1119R119CCgcTgc8686B.1.617.20.000324
ORF1ab/nsp1119R119HcGccAc8080B.1.617.20.000301
ORF1ab/nsp1119R119RcgCcgT7475AY.40.000115
ORF1ab/nsp1119R119RcgCcgA175AY.40.000002
ORF1ab/nsp1119R119RcgCcgT6060AY.750.003361
ORF1ab/nsp1119R119delCGC---5454All0.00001
ORF1ab/nsp1119R119RcgCcgT5252AY.1210.007037
ORF1ab/nsp1119R119RcgCcgT4950B.1.617.20.000185
ORF1ab/nsp1119R119RcgCcgG150B.1.617.20.000004
ORF1ab/nsp1119R119CCgcTgc4949B.1.1.2140.002717
ORF1ab/nsp1119R119CCgcTgc4747AY.16.10.022086
ORF1ab/nsp1119R119RcgCcgT4647AY.250.000277
ORF1ab/nsp1119R119RcgCcgG147AY.250.000006
ORF1ab/nsp1119R119RcgCcgT4546AY.1190.001589
ORF1ab/nsp1119R119RcgCcgG146AY.1190.000035
ORF1ab/nsp1119R119LcGccTc4141All0.000008
ORF1ab/nsp1119R119CCgcTgc4141B.1.1.70.000037
ORF1ab/nsp1119R119CCgcTgc4040AY.40.000062
ORF1ab/nsp1119R119CCgcTgc3838AY.250.000229
ORF1ab/nsp1119R119HcGccAc3838AY.440.000231
ORF1ab/nsp1119R119RcgCcgT3232AY.330.002137
ORF1ab/nsp1119R119CCgcTgc3232AY.430.000142
ORF1ab/nsp1119R119HcGccAc3131AY.40.000048
ORF1ab/nsp1119R119RcgCcgT2930AY.98.10.001404
ORF1ab/nsp1119R119RcgCcgG130AY.98.10.000048
ORF1ab/nsp1119R119HcGccAc2929AY.430.000128
ORF1ab/nsp1119R119HcGccAc2828AY.60.001152
ORF1ab/nsp1119R119HcGccAc2828AY.610.002934
ORF1ab/nsp1119R119RcgCcgT2727C.360.02459
ORF1ab/nsp1119R119RcgCcgT1626AY.30.000159
ORF1ab/nsp1119R119RcgCcgA1026AY.30.000099
ORF1ab/nsp1119R119SCgcAgc2323All0.000004
ORF1ab/nsp1119R119RcgCcgT2323B.10.000211
ORF1ab/nsp1119R119RcgCcgT2323Q.80.003793
ORF1ab/nsp1119R119RcgCcgT2121B.1.1770.000277
ORF1ab/nsp1119R119HcGccAc2020B.10.000183
ORF1ab/nsp1119R119RcgCcgT1919P.1.140.000908
ORF1ab/nsp1119R119RcgCcgT1818P.10.000284
ORF1ab/nsp1119R119HcGccAc1717AY.4.20.000369
ORF1ab/nsp1119R119RcgCcgT1616B.1.20.000141
ORF1ab/nsp1119R119CCgcTgc1515B.10.000137
ORF1ab/nsp1119R119RcgCcgT1414AY.290.000221
ORF1ab/nsp1119R119HcGccAc1414B.1.20.000123
ORF1ab/nsp1119R119RcgCcgT1013AY.1030.000062
ORF1ab/nsp1119R119RcgCcgG213AY.1030.000012
ORF1ab/nsp1119R119RcgCcgA113AY.1030.000006
ORF1ab/nsp1119R119CCgcTgc1313B.1.1770.000171
ORF1ab/nsp1119R119CCgcTgc1212AY.440.000073
ORF1ab/nsp1119R119CCgcTgc1111AY.610.001153
ORF1ab/nsp1119R119HcGccAc1111B.1.1770.000145
ORF1ab/nsp1119R119HcGccAc1111B.1.3510.000327
ORF1ab/nsp1119R119RcgCcgT1010B.1.1.5190.000397
ORF1ab/nsp1119R119RcgCcgT1010B.1.2340.001319
ORF1ab/nsp1119R119CCgcTgc1010P.10.000158
ORF1ab/nsp1119R119RcgCcgT99B.1.10.000163
ORF1ab/nsp1119R119CCgcTgc99B.1.1.4610.108434
ORF1ab/nsp1119R119LcGccTc99B.1.1.70.000008
ORF1ab/nsp1119R119HcGccAc88AY.1020.000212
ORF1ab/nsp1119R119RcgCcgT88AY.1170.000676
ORF1ab/nsp1119R119HcGccAc88AY.1210.001083
ORF1ab/nsp1119R119HcGccAc88AY.250.000048
ORF1ab/nsp1119R119CCgcTgc88AY.390.000198
ORF1ab/nsp1119R119CCgcTgc88B.1.3770.03653
ORF1ab/nsp1119R119CCgcTgc88B.1.5800.03252
ORF1ab/nsp1119R119CCgcTgc77AY.1030.000043
ORF1ab/nsp1119R119CCgcTgc77AY.30.00007
ORF1ab/nsp1119R119HcGccAc77AY.740.00081
ORF1ab/nsp1119R119CCgcTgc77B.1.4290.000165
ORF1ab/nsp1119R119RcgCcgT66B.1.3510.000178
ORF1ab/nsp1119R119CCgcTgc55AY.1020.000133
ORF1ab/nsp1119R119RcgCcgT55AY.1020.000133
ORF1ab/nsp1119R119CCgcTgc55AY.290.000079
ORF1ab/nsp1119R119HcGccAc55AY.330.000334
ORF1ab/nsp1119R119HcGccAc55AY.390.000124
ORF1ab/nsp1119R119HcGccAc55AY.98.10.000242
ORF1ab/nsp1119R119SCgcAgc55B.1.1.70.000004
ORF1ab/nsp1119R119delCGC---55B.1.1.70.000004
ORF1ab/nsp1119R119CCgcTgc55B.1.2320.002687
ORF1ab/nsp1119R119SCgcAgc55B.1.258.170.00052
ORF1ab/nsp1119R119CCgcTgc55B.1.3510.000149
ORF1ab/nsp1119R119delCGC---440.222222
ORF1ab/nsp1119R119RcgCcgT34AY.1200.000112
ORF1ab/nsp1119R119RcgCcgG14AY.1200.000037
ORF1ab/nsp1119R119RcgCcgT44AY.260.000113
ORF1ab/nsp1119R119LcGccTc44AY.40.000006
ORF1ab/nsp1119R119delCGC---44AY.40.000006
ORF1ab/nsp1119R119HcGccAc44AY.420.000161
ORF1ab/nsp1119R119RcgCcgT24AY.440.000012
ORF1ab/nsp1119R119RcgCcgG14AY.440.000006
ORF1ab/nsp1119R119RcgCcgA14AY.440.000006
ORF1ab/nsp1119R119HcGccAc44AY.460.000416
ORF1ab/nsp1119R119LcGccTc44AY.710.0019
ORF1ab/nsp1119R119RcgCcgT44AY.80.002424
ORF1ab/nsp1119R119HcGccAc44B.1.10.000073
ORF1ab/nsp1119R119CCgcTgc44B.1.10.000073
ORF1ab/nsp1119R119delCGC---44B.1.1.330.001684
ORF1ab/nsp1119R119delCGC---44B.1.1.3480.003185
ORF1ab/nsp1119R119HcGccAc44B.1.1600.000125
ORF1ab/nsp1119R119CCgcTgc44B.1.20.000035
ORF1ab/nsp1119R119RcgCcgT44B.1.5260.000094
ORF1ab/nsp1119R119CCgcTgc44P.1.170.000647
ORF1ab/nsp1119R119RcgCcgT44Q.10.000505
ORF1ab/nsp1119R119PcGccCc23All0
ORF1ab/nsp1119R119PcGCcCG13All0
ORF1ab/nsp1119R119CCgcTgc33AY.100.00159
ORF1ab/nsp1119R119CCgcTgc33AY.1130.000427
ORF1ab/nsp1119R119HcGccAc33AY.1130.000427
ORF1ab/nsp1119R119CCgcTgc33AY.1200.000112
ORF1ab/nsp1119R119RcgCcgT33AY.200.000117
ORF1ab/nsp1119R119RcgCcgT33AY.210.005693
ORF1ab/nsp1119R119HcGccAc33AY.30.00003
ORF1ab/nsp1119R119RcgCcgT23AY.4.20.000043
ORF1ab/nsp1119R119RcgCcgA13AY.4.20.000022
ORF1ab/nsp1119R119LcGccTc33AY.430.000013
ORF1ab/nsp1119R119CCgcTgc33AY.450.000365
ORF1ab/nsp1119R119HcGccAc33AY.46.30.002801
ORF1ab/nsp1119R119CCgcTgc33AY.470.000093
ORF1ab/nsp1119R119RcgCcgT23AY.470.000062
ORF1ab/nsp1119R119RcgCcgA13AY.470.000031
ORF1ab/nsp1119R119HcGccAc33AY.520.002443
ORF1ab/nsp1119R119CCgcTgc33AY.740.000347
ORF1ab/nsp1119R119CCgcTgc33AY.9.20.00011
ORF1ab/nsp1119R119LcGccTc33B.10.000027
ORF1ab/nsp1119R119CCgcTgc33B.1.1040.01107
ORF1ab/nsp1119R119HcGccAc33B.1.177.350.002073
ORF1ab/nsp1119R119RcgCcgT33B.1.2410.002435
ORF1ab/nsp1119R119CCgcTgc33B.1.5260.000071
ORF1ab/nsp1119R119RcgCcgT33D.20.000225
ORF1ab/nsp1119R119HcGccAc33P.1.150.000697
ORF1ab/nsp1119R119RcgCcgT33P.1.150.000697
ORF1ab/nsp1119R119YCGCTAT220.111111
ORF1ab/nsp1119R119RcgCcgT220.111111
ORF1ab/nsp1119R119YCGCTAT22All0
ORF1ab/nsp1119R119RcgCcgT22AY.1000.000092
ORF1ab/nsp1119R119LcGccTc22AY.1020.000053
ORF1ab/nsp1119R119LcGccTc22AY.1030.000012
ORF1ab/nsp1119R119RcgCcgT22AY.1130.000285
ORF1ab/nsp1119R119CCgcTgc22AY.1140.000462
ORF1ab/nsp1119R119HcGccAc22AY.116.10.000623
ORF1ab/nsp1119R119RcgCcgT22AY.140.000176
ORF1ab/nsp1119R119HcGccAc22AY.160.000759
ORF1ab/nsp1119R119delCGC---22AY.250.000012
ORF1ab/nsp1119R119HcGccAc22AY.290.000032
ORF1ab/nsp1119R119CCgcTgc22AY.4.20.000043
ORF1ab/nsp1119R119RcgCcgT22AY.420.00008
ORF1ab/nsp1119R119delCGC---22AY.430.000009
ORF1ab/nsp1119R119CCgcTgc22AY.460.000208
ORF1ab/nsp1119R119HcGccAc22AY.46.50.000397
ORF1ab/nsp1119R119LcGccTc22AY.46.60.000144
ORF1ab/nsp1119R119CCgcTgc22AY.480.00093
ORF1ab/nsp1119R119CCgcTgc22AY.50.000041
ORF1ab/nsp1119R119HcGccAc22AY.670.000929
ORF1ab/nsp1119R119HcGccAc22AY.750.000112
ORF1ab/nsp1119R119CCgcTgc22AY.750.000112
ORF1ab/nsp1119R119HcGccAc22AY.75.10.000361
ORF1ab/nsp1119R119LcGccTc22AY.9.10.000167
ORF1ab/nsp1119R119HcGccAc22AY.9.20.000073
ORF1ab/nsp1119R119HcGccAc22AY.920.000575
ORF1ab/nsp1119R119CCgcTgc22AY.98.10.000097
ORF1ab/nsp1119R119RcgCcgT22B.1.1.1350.00939
ORF1ab/nsp1119R119RcgCcgT22B.1.1.2280.006098
ORF1ab/nsp1119R119CCgcTgc22B.1.1.2840.000215
ORF1ab/nsp1119R119RcgCcgT22B.1.1.330.000842
ORF1ab/nsp1119R119CCgcTgc22B.1.1.3720.001377
ORF1ab/nsp1119R119HcGccAc22B.1.1.500.001358
ORF1ab/nsp1119R119SCgcAgc22B.1.1.5190.000079
ORF1ab/nsp1119R119CCgcTgc22B.1.1.5190.000079
ORF1ab/nsp1119R119HcGccAc22B.1.1.5260.007092
ORF1ab/nsp1119R119CCgcTgc12B.1.160.160.000929
ORF1ab/nsp1119R119CCgCTgT12B.1.160.160.000929
ORF1ab/nsp1119R119RcgCcgT22B.1.160.250.022222
ORF1ab/nsp1119R119RcgCcgT22B.1.177.210.000153
ORF1ab/nsp1119R119RcgCcgT22B.1.177.810.000379
ORF1ab/nsp1119R119delCGC---22B.1.20.000018
ORF1ab/nsp1119R119RcgCcgT22B.1.2370.00995
ORF1ab/nsp1119R119RcgCcgT22B.1.2400.000431
ORF1ab/nsp1119R119RcgCcgT22B.1.390.007812
ORF1ab/nsp1119R119HcGccAc22B.1.5260.000047
ORF1ab/nsp1119R119CCgcTgc22B.1.5960.000174
ORF1ab/nsp1119R119RcgCcgT22B.1.6370.000146
ORF1ab/nsp1119R119HcGccAc22C.360.001821
ORF1ab/nsp1119R119RcgCcgT22C.370.000232
ORF1ab/nsp1119R119delCGC---22N.40.008511
ORF1ab/nsp1119R119delCGC---22N.60.014184
ORF1ab/nsp1119R119delCGC---22P.20.000373
ORF1ab/nsp1119R119CCgcTgc110.055556
ORF1ab/nsp1119R119HcGccAc11A.2.5.10.004808
ORF1ab/nsp1119R119CCgcTgc11AD.20.000219
ORF1ab/nsp1119R119GCgcGgc11All0
ORF1ab/nsp1119R119del2CGC--G11All0
ORF1ab/nsp1119R119TCGCACT11All0
ORF1ab/nsp1119R119CCgcTgc11AU.10.001266
ORF1ab/nsp1119R119CCgcTgc11AY.1000.000046
ORF1ab/nsp1119R119HcGccAc11AY.110.001339
ORF1ab/nsp1119R119RcgCcgT11AY.1160.000287
ORF1ab/nsp1119R119delCGC---11AY.1160.000287
ORF1ab/nsp1119R119HcGccAc11AY.1170.000085
ORF1ab/nsp1119R119CCgcTgc11AY.1170.000085
ORF1ab/nsp1119R119RcgCcgT11AY.1180.000063
ORF1ab/nsp1119R119CCgcTgc11AY.1190.000035
ORF1ab/nsp1119R119PcGCcCG11AY.1190.000035
ORF1ab/nsp1119R119delCGC---11AY.120.000316
ORF1ab/nsp1119R119CCgcTgc11AY.1210.000135
ORF1ab/nsp1119R119RcgCcgA11AY.160.00038
ORF1ab/nsp1119R119CCgcTgc11AY.200.000039
ORF1ab/nsp1119R119HcGccAc11AY.200.000039
ORF1ab/nsp1119R119RcgCcgT11AY.230.00007
ORF1ab/nsp1119R119HcGccAc11AY.230.00007
ORF1ab/nsp1119R119LcGccTc11AY.280.00189
ORF1ab/nsp1119R119SCgcAgc11AY.290.000016
ORF1ab/nsp1119R119LcGccTc11AY.30.00001
ORF1ab/nsp1119R119delCGC---11AY.30.00001
ORF1ab/nsp1119R119CCgcTgc11AY.320.000532
ORF1ab/nsp1119R119CCgcTgc11AY.330.000067
ORF1ab/nsp1119R119CCgcTgc11AY.340.000097
ORF1ab/nsp1119R119HcGccAc11AY.340.000097
ORF1ab/nsp1119R119CCgcTgc11AY.360.000148
ORF1ab/nsp1119R119delCGC---11AY.380.000499
ORF1ab/nsp1119R119LcGccTc11AY.390.000025
ORF1ab/nsp1119R119LcGccTc11AY.39.20.001541
ORF1ab/nsp1119R119SCgcAgc11AY.40.000002
ORF1ab/nsp1119R119HcGccAc11AY.4.2.10.000149
ORF1ab/nsp1119R119CCgcTgc11AY.4.2.10.000149
ORF1ab/nsp1119R119RcgCcgT11AY.4.50.000107
ORF1ab/nsp1119R119delCGC---11AY.4.50.000107
ORF1ab/nsp1119R119CCgcTgc11AY.420.00004
ORF1ab/nsp1119R119RcgCcgT11AY.460.000104
ORF1ab/nsp1119R119RcgCcgT11AY.46.40.000165
ORF1ab/nsp1119R119CCgcTgc11AY.46.40.000165
ORF1ab/nsp1119R119HcGccAc11AY.470.000031
ORF1ab/nsp1119R119HcGccAc11AY.50.000021
ORF1ab/nsp1119R119SCgcAgc11AY.50.000021
ORF1ab/nsp1119R119RcgCcgT11AY.5.30.000337
ORF1ab/nsp1119R119RcgCcgT11AY.5.40.000277
ORF1ab/nsp1119R119CCgcTgc11AY.530.000288
ORF1ab/nsp1119R119RcgCcgT11AY.550.000917
ORF1ab/nsp1119R119CCgcTgc11AY.590.00053
ORF1ab/nsp1119R119RcgCcgT11AY.60.000041
ORF1ab/nsp1119R119CCgcTgc11AY.600.000938
ORF1ab/nsp1119R119RcgCcgT11AY.610.000105
ORF1ab/nsp1119R119RcgCcgT11AY.620.000436
ORF1ab/nsp1119R119HcGccAc11AY.620.000436
ORF1ab/nsp1119R119RcgCcgT11AY.650.000533
ORF1ab/nsp1119R119delCGC---11AY.650.000533
ORF1ab/nsp1119R119CCgcTgc11AY.650.000533
ORF1ab/nsp1119R119TCGCACT11AY.670.000464
ORF1ab/nsp1119R119RcgCcgT11AY.680.000274
ORF1ab/nsp1119R119SCgcAgc11AY.690.000187
ORF1ab/nsp1119R119HcGccAc11AY.690.000187
ORF1ab/nsp1119R119CCgcTgc11AY.7.10.000113
ORF1ab/nsp1119R119HcGccAc11AY.710.000475
ORF1ab/nsp1119R119RcgCcgA11AY.740.000116
ORF1ab/nsp1119R119CCgcTgc11AY.780.001541
ORF1ab/nsp1119R119CCgcTgc11AY.90.000068
ORF1ab/nsp1119R119HcGccAc11AY.9.10.000084
ORF1ab/nsp1119R119delCGC---11AY.9.10.000084
ORF1ab/nsp1119R119RcgCcgT11AY.9.20.000037
ORF1ab/nsp1119R119RcgCcgT11AY.910.00073
ORF1ab/nsp1119R119HcGccAc11AY.910.00073
ORF1ab/nsp1119R119RcgCcgT11AY.920.000287
ORF1ab/nsp1119R119CCgcTgc11AY.930.000273
ORF1ab/nsp1119R119delCGC---11AY.950.000761
ORF1ab/nsp1119R119RcgCcgT11AY.960.002075
ORF1ab/nsp1119R119CCgcTgc11AY.980.000079
ORF1ab/nsp1119R119RcgCcgT11AY.980.000079
ORF1ab/nsp1119R119CCgcTgc11AY.99.20.000092
ORF1ab/nsp1119R119RcgCcgT11AZ.2.10.00813
ORF1ab/nsp1119R119RcgCcgT11B0.000128
ORF1ab/nsp1119R119CCgcTgc11B0.000128
ORF1ab/nsp1119R119delCGC---11B.10.000009
ORF1ab/nsp1119R119SCgcAgc11B.10.000009
ORF1ab/nsp1119R119SCgcAgc11B.1.10.000018
ORF1ab/nsp1119R119HcGccAc11B.1.1.1660.033333
ORF1ab/nsp1119R119RcgCcgT11B.1.1.1720.018182
ORF1ab/nsp1119R119CCgcTgc11B.1.1.1920.002309
ORF1ab/nsp1119R119CCgcTgc11B.1.1.2220.000204
ORF1ab/nsp1119R119CCgcTgc11B.1.1.2630.001558
ORF1ab/nsp1119R119RcgCcgT11B.1.1.2840.000107
ORF1ab/nsp1119R119del2CGC--G11B.1.1.3530.020833
ORF1ab/nsp1119R119CCgcTgc11B.1.1.370.000193
ORF1ab/nsp1119R119HcGccAc11B.1.1.370.000193
ORF1ab/nsp1119R119RcgCcgT11B.1.1.370.000193
ORF1ab/nsp1119R119HcGccAc11B.1.1.3970.002252
ORF1ab/nsp1119R119LcGccTc11B.1.1.4090.002833
ORF1ab/nsp1119R119SCgcAgc11B.1.1.4490.022727
ORF1ab/nsp1119R119RcgCcgT11B.1.1.4850.016667
ORF1ab/nsp1119R119CCgcTgc11B.1.1.5070.008696
ORF1ab/nsp1119R119RcgCcgT11B.1.1.5070.008696
ORF1ab/nsp1119R119HcGccAc11B.1.1.5190.00004
ORF1ab/nsp1119R119CCgcTgc11B.1.1.5230.001563
ORF1ab/nsp1119R119GCgcGgc11B.1.1.70.000001
ORF1ab/nsp1119R119CCgcTgc11B.1.1.700.000341
ORF1ab/nsp1119R119CCgcTgc11B.1.1600.000031
ORF1ab/nsp1119R119RcgCcgA11B.1.1600.000031
ORF1ab/nsp1119R119RcgCcgT11B.1.160.160.000929
ORF1ab/nsp1119R119CCgcTgc11B.1.160.300.002976
ORF1ab/nsp1119R119RcgCcgT11B.1.1700.00431
ORF1ab/nsp1119R119HcGccAc11B.1.177.210.000076
ORF1ab/nsp1119R119delCGC---11B.1.177.40.000211
ORF1ab/nsp1119R119SCgcAgc11B.1.177.440.000519
ORF1ab/nsp1119R119HcGccAc11B.1.177.440.000519
ORF1ab/nsp1119R119RcgCcgT11B.1.177.480.003125
ORF1ab/nsp1119R119delCGC---11B.1.177.540.000606
ORF1ab/nsp1119R119HcGccAc11B.1.177.600.000218
ORF1ab/nsp1119R119RcgCcgT11B.1.177.70.000165
ORF1ab/nsp1119R119CCgcTgc11B.1.177.750.001041
ORF1ab/nsp1119R119CCgcTgc11B.1.177.80.000752
ORF1ab/nsp1119R119delCGC---11B.1.1790.003759
ORF1ab/nsp1119R119SCgcAgc11B.1.2060.000816
ORF1ab/nsp1119R119RcgCcgT11B.1.2100.002132
ORF1ab/nsp1119R119delCGC---11B.1.2110.025
ORF1ab/nsp1119R119PcGccCc11B.1.2210.000071
ORF1ab/nsp1119R119RcgCcgT11B.1.2210.000071
ORF1ab/nsp1119R119HcGccAc11B.1.221.30.000833
ORF1ab/nsp1119R119PcGccCc11B.1.2430.00007
ORF1ab/nsp1119R119RcgCcgA11B.1.2430.00007
ORF1ab/nsp1119R119CCgcTgc11B.1.2580.000067
ORF1ab/nsp1119R119RcgCcgG11B.1.2580.000067
ORF1ab/nsp1119R119CCgcTgc11B.1.258.170.000104
ORF1ab/nsp1119R119LcGccTc11B.1.258.170.000104
ORF1ab/nsp1119R119HcGccAc11B.1.258.70.001912
ORF1ab/nsp1119R119HcGccAc11B.1.3020.013333
ORF1ab/nsp1119R119delCGC---11B.1.3510.00003
ORF1ab/nsp1119R119CCgcTgc11B.1.351.30.000876
ORF1ab/nsp1119R119CCgcTgc11B.1.360.000146
ORF1ab/nsp1119R119RcgCcgA11B.1.360.000146
ORF1ab/nsp1119R119delCGC---11B.1.360.000146
ORF1ab/nsp1119R119HcGccAc11B.1.36.170.000494
ORF1ab/nsp1119R119CCgcTgc11B.1.36.290.000517
ORF1ab/nsp1119R119CCgcTgc11B.1.3620.001541
ORF1ab/nsp1119R119CCgcTgc11B.1.3660.004878
ORF1ab/nsp1119R119SCgcAgc11B.1.3960.000706
ORF1ab/nsp1119R119CCgcTgc11B.1.4000.000429
ORF1ab/nsp1119R119LcGccTc11B.1.4000.000429
ORF1ab/nsp1119R119CCgcTgc11B.1.4090.000781
ORF1ab/nsp1119R119CCgcTgc11B.1.4160.001269
ORF1ab/nsp1119R119CCgcTgc11B.1.4270.00005
ORF1ab/nsp1119R119delCGC---11B.1.4270.00005
ORF1ab/nsp1119R119HcGccAc11B.1.4290.000024
ORF1ab/nsp1119R119delCGC---11B.1.4290.000024
ORF1ab/nsp1119R119RcgCcgT11B.1.4290.000024
ORF1ab/nsp1119R119RcgCcgT11B.1.438.10.000107
ORF1ab/nsp1119R119CCgcTgc11B.1.438.10.000107
ORF1ab/nsp1119R119RcgCcgT11B.1.466.20.000391
ORF1ab/nsp1119R119RcgCcgT11B.1.4680.005714
ORF1ab/nsp1119R119RcgCcgT11B.1.4690.00361
ORF1ab/nsp1119R119CCgcTgc11B.1.4740.001901
ORF1ab/nsp1119R119RcgCcgT11B.1.4870.019608
ORF1ab/nsp1119R119RcgCcgT11B.1.4990.00105
ORF1ab/nsp1119R119RcgCcgT11B.1.5030.002488
ORF1ab/nsp1119R119CCgcTgc11B.1.5250.000113
ORF1ab/nsp1119R119RcgCcgT11B.1.5440.006024
ORF1ab/nsp1119R119RcgCcgT11B.1.5640.000426
ORF1ab/nsp1119R119HcGccAc11B.1.5750.000303
ORF1ab/nsp1119R119HcGccAc11B.1.575.10.002439
ORF1ab/nsp1119R119RcgCcgT11B.1.5890.007576
ORF1ab/nsp1119R119RcgCcgT11B.1.5960.000087
ORF1ab/nsp1119R119HcGccAc11B.1.5960.000087
ORF1ab/nsp1119R119CCgcTgc11B.1.617.10.000129
ORF1ab/nsp1119R119LcGccTc11B.1.617.20.000004
ORF1ab/nsp1119R119SCgcAgc11B.1.617.20.000004
ORF1ab/nsp1119R119delCGC---11B.1.617.20.000004
ORF1ab/nsp1119R119HcGccAc11B.1.617.30.002985
ORF1ab/nsp1119R119CCgcTgc11B.1.6210.000089
ORF1ab/nsp1119R119HcGccAc11B.1.6210.000089
ORF1ab/nsp1119R119RcgCcgT11B.1.6230.000536
ORF1ab/nsp1119R119LcGccTc11B.120.00641
ORF1ab/nsp1119R119RcgCcgT11B.30.000831
ORF1ab/nsp1119R119delCGC---11B.400.000364
ORF1ab/nsp1119R119delCGC---11C.170.055556
ORF1ab/nsp1119R119delCGC---11C.350.000774
ORF1ab/nsp1119R119CCgcTgc11C.370.000116
ORF1ab/nsp1119R119HcGccAc11D.20.000075
ORF1ab/nsp1119R119CCgcTgc11D.20.000075
ORF1ab/nsp1119R119RcgCcgT11P.1.40.000977
ORF1ab/nsp1119R119HcGccAc11P.20.000187
ORF1ab/nsp1119R119RcgCcgT11Q.30.000145
ORF1ab/nsp1119R119LcGccTc11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.