CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 118 & Codon = taT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1118Y118YY118YsyntaCtaT9569561617-619

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1118Y118YtaCtaT956956All0.000183
ORF1ab/nsp1118Y118YtaCtaT172172B.1.1081
ORF1ab/nsp1118Y118YtaCtaT132132B.1.1.70.000118
ORF1ab/nsp1118Y118YtaCtaT119119B.1.4290.0028
ORF1ab/nsp1118Y118YtaCtaT5656AY.30.000557
ORF1ab/nsp1118Y118YtaCtaT4343B.1.617.20.000162
ORF1ab/nsp1118Y118YtaCtaT3737B.1.1620.18593
ORF1ab/nsp1118Y118YtaCtaT3131B.1.20.000273
ORF1ab/nsp1118Y118YtaCtaT2424AY.40.000037
ORF1ab/nsp1118Y118YtaCtaT2222AY.430.000097
ORF1ab/nsp1118Y118YtaCtaT2222B.1.6210.001947
ORF1ab/nsp1118Y118YtaCtaT1818P.10.000284
ORF1ab/nsp1118Y118YtaCtaT1616AY.260.000453
ORF1ab/nsp1118Y118YtaCtaT1515AY.1020.000398
ORF1ab/nsp1118Y118YtaCtaT1515B.1.5250.001697
ORF1ab/nsp1118Y118YtaCtaT1414AY.450.001704
ORF1ab/nsp1118Y118YtaCtaT1414B.1.1770.000184
ORF1ab/nsp1118Y118YtaCtaT1313B.1.3400.055794
ORF1ab/nsp1118Y118YtaCtaT1111AY.250.000066
ORF1ab/nsp1118Y118YtaCtaT99B.10.000082
ORF1ab/nsp1118Y118YtaCtaT88AY.1030.00005
ORF1ab/nsp1118Y118YtaCtaT88B.1.1.2970.017897
ORF1ab/nsp1118Y118YtaCtaT77AY.390.000173
ORF1ab/nsp1118Y118YtaCtaT77B.1.1.4420.12963
ORF1ab/nsp1118Y118YtaCtaT77B.1.177.750.007284
ORF1ab/nsp1118Y118YtaCtaT77B.1.2210.000497
ORF1ab/nsp1118Y118YtaCtaT66B.1.10.000109
ORF1ab/nsp1118Y118YtaCtaT55AY.1190.000177
ORF1ab/nsp1118Y118YtaCtaT55B.1.177.810.000947
ORF1ab/nsp1118Y118YtaCtaT55C.180.012953
ORF1ab/nsp1118Y118YtaCtaT44AY.200.000155
ORF1ab/nsp1118Y118YtaCtaT44AY.4.20.000087
ORF1ab/nsp1118Y118YtaCtaT44AY.440.000024
ORF1ab/nsp1118Y118YtaCtaT44AY.98.10.000194
ORF1ab/nsp1118Y118YtaCtaT44B.1.1.3120.007648
ORF1ab/nsp1118Y118YtaCtaT33AY.320.001597
ORF1ab/nsp1118Y118YtaCtaT33AY.460.000312
ORF1ab/nsp1118Y118YtaCtaT33AY.46.40.000494
ORF1ab/nsp1118Y118YtaCtaT33B.1.3510.000089
ORF1ab/nsp1118Y118YtaCtaT33B.1.5260.000071
ORF1ab/nsp1118Y118YtaCtaT33B.1.5750.00091
ORF1ab/nsp1118Y118YtaCtaT33B.1.5960.000261
ORF1ab/nsp1118Y118YtaCtaT22A.50.003846
ORF1ab/nsp1118Y118YtaCtaT22AY.1000.000092
ORF1ab/nsp1118Y118YtaCtaT22AY.4.50.000215
ORF1ab/nsp1118Y118YtaCtaT22AY.50.000041
ORF1ab/nsp1118Y118YtaCtaT22AY.5.40.000553
ORF1ab/nsp1118Y118YtaCtaT22B.1.1.3720.001377
ORF1ab/nsp1118Y118YtaCtaT22B.1.2430.000139
ORF1ab/nsp1118Y118YtaCtaT22B.1.2580.000133
ORF1ab/nsp1118Y118YtaCtaT22B.1.4270.000101
ORF1ab/nsp1118Y118YtaCtaT22B.1.4280.002041
ORF1ab/nsp1118Y118YtaCtaT22B.1.6090.000959
ORF1ab/nsp1118Y118YtaCtaT22B.1.6370.000146
ORF1ab/nsp1118Y118YtaCtaT22B.400.000729
ORF1ab/nsp1118Y118YtaCtaT11AY.1060.000335
ORF1ab/nsp1118Y118YtaCtaT11AY.1110.000183
ORF1ab/nsp1118Y118YtaCtaT11AY.1160.000287
ORF1ab/nsp1118Y118YtaCtaT11AY.1170.000085
ORF1ab/nsp1118Y118YtaCtaT11AY.230.00007
ORF1ab/nsp1118Y118YtaCtaT11AY.290.000016
ORF1ab/nsp1118Y118YtaCtaT11AY.34.10.00051
ORF1ab/nsp1118Y118YtaCtaT11AY.360.000148
ORF1ab/nsp1118Y118YtaCtaT11AY.39.10.00004
ORF1ab/nsp1118Y118YtaCtaT11AY.620.000436
ORF1ab/nsp1118Y118YtaCtaT11AY.680.000274
ORF1ab/nsp1118Y118YtaCtaT11AY.7.10.000113
ORF1ab/nsp1118Y118YtaCtaT11AY.710.000475
ORF1ab/nsp1118Y118YtaCtaT11AY.750.000056
ORF1ab/nsp1118Y118YtaCtaT11AY.840.000437
ORF1ab/nsp1118Y118YtaCtaT11AY.920.000287
ORF1ab/nsp1118Y118YtaCtaT11AY.99.20.000092
ORF1ab/nsp1118Y118YtaCtaT11B0.000128
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.10.000327
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.1350.004695
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.1700.001247
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.2980.000862
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.3070.002532
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.3440.010753
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.3890.006061
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.4160.000905
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.4340.000349
ORF1ab/nsp1118Y118YtaCtaT11B.1.177.120.000152
ORF1ab/nsp1118Y118YtaCtaT11B.1.177.210.000076
ORF1ab/nsp1118Y118YtaCtaT11B.1.2340.000132
ORF1ab/nsp1118Y118YtaCtaT11B.1.36.310.001751
ORF1ab/nsp1118Y118YtaCtaT11B.1.3670.000792
ORF1ab/nsp1118Y118YtaCtaT11B.1.4000.000429
ORF1ab/nsp1118Y118YtaCtaT11B.1.5560.007519
ORF1ab/nsp1118Y118YtaCtaT11B.1.5640.000426
ORF1ab/nsp1118Y118YtaCtaT11B.1.564.10.001577
ORF1ab/nsp1118Y118YtaCtaT11C.160.00106
ORF1ab/nsp1118Y118YtaCtaT11D.20.000075
ORF1ab/nsp1118Y118YtaCtaT11P.1.70.000319
ORF1ab/nsp1118Y118YtaCtaT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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