CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 118

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1118Y118YY118YsyntaCtaT9569561617-619
ORF1ab/nsp1118Y118HY118HnonsynTacCac5795791617-619
ORF1ab/nsp1118Y118CY118CnonsyntActGc2352351617-619
ORF1ab/nsp1118Y118delY118deldelTAC---55551617-619
ORF1ab/nsp1118Y118NY118NnonsynTacAac53531617-619
ORF1ab/nsp1118Y118XY118XnonsyntaCtaA540.8617-619
ORF1ab/nsp1118Y118XY118XnonsyntaCtaG510.2617-619
ORF1ab/nsp1118Y118FY118FnonsyntActTc331617-619
ORF1ab/nsp1118Y118DY118DnonsynTacGac331617-619
ORF1ab/nsp1118Y118SY118SnonsyntActCc320.666667617-619
ORF1ab/nsp1118Y118SY118SnonsyntACtCG310.333333617-619
ORF1ab/nsp1118Y118EY118EnonsynTaCGaA221617-619
ORF1ab/nsp1118Y118TY118TnonsynTACACA111617-619
ORF1ab/nsp1118Y118GY118GnonsynTAcGGc111617-619

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1118Y118YtaCtaT956956All0.000183
ORF1ab/nsp1118Y118HTacCac579579All0.000111
ORF1ab/nsp1118Y118CtActGc235235All0.000045
ORF1ab/nsp1118Y118HTacCac213213AY.260.00603
ORF1ab/nsp1118Y118YtaCtaT172172B.1.1081
ORF1ab/nsp1118Y118YtaCtaT132132B.1.1.70.000118
ORF1ab/nsp1118Y118YtaCtaT119119B.1.4290.0028
ORF1ab/nsp1118Y118CtActGc100100B.1.20.000881
ORF1ab/nsp1118Y118HTacCac6464B.1.1.70.000057
ORF1ab/nsp1118Y118YtaCtaT5656AY.30.000557
ORF1ab/nsp1118Y118CtActGc5656AY.440.000341
ORF1ab/nsp1118Y118delTAC---5555All0.000011
ORF1ab/nsp1118Y118HTacCac5454AY.680.014782
ORF1ab/nsp1118Y118NTacAac5353All0.00001
ORF1ab/nsp1118Y118YtaCtaT4343B.1.617.20.000162
ORF1ab/nsp1118Y118HTacCac3939AY.40.000061
ORF1ab/nsp1118Y118CtActGc3939B.1.2110.975
ORF1ab/nsp1118Y118YtaCtaT3737B.1.1620.18593
ORF1ab/nsp1118Y118NTacAac3434B.1.1.70.00003
ORF1ab/nsp1118Y118YtaCtaT3131B.1.20.000273
ORF1ab/nsp1118Y118YtaCtaT2424AY.40.000037
ORF1ab/nsp1118Y118YtaCtaT2222AY.430.000097
ORF1ab/nsp1118Y118YtaCtaT2222B.1.6210.001947
ORF1ab/nsp1118Y118YtaCtaT1818P.10.000284
ORF1ab/nsp1118Y118YtaCtaT1616AY.260.000453
ORF1ab/nsp1118Y118YtaCtaT1515AY.1020.000398
ORF1ab/nsp1118Y118HTacCac1515AY.250.00009
ORF1ab/nsp1118Y118YtaCtaT1515B.1.5250.001697
ORF1ab/nsp1118Y118YtaCtaT1414AY.450.001704
ORF1ab/nsp1118Y118YtaCtaT1414B.1.1770.000184
ORF1ab/nsp1118Y118HTacCac1414B.1.20.000123
ORF1ab/nsp1118Y118HTacCac1313AY.1140.003004
ORF1ab/nsp1118Y118YtaCtaT1313B.1.3400.055794
ORF1ab/nsp1118Y118HTacCac1212AY.1190.000424
ORF1ab/nsp1118Y118HTacCac1111AY.140.000968
ORF1ab/nsp1118Y118YtaCtaT1111AY.250.000066
ORF1ab/nsp1118Y118HTacCac1010B.1.1.1740.033784
ORF1ab/nsp1118Y118HTacCac1010B.1.617.20.000038
ORF1ab/nsp1118Y118HTacCac99AY.430.00004
ORF1ab/nsp1118Y118YtaCtaT99B.10.000082
ORF1ab/nsp1118Y118HTacCac99B.1.351.20.002723
ORF1ab/nsp1118Y118YtaCtaT88AY.1030.00005
ORF1ab/nsp1118Y118YtaCtaT88B.1.1.2970.017897
ORF1ab/nsp1118Y118YtaCtaT77AY.390.000173
ORF1ab/nsp1118Y118YtaCtaT77B.1.1.4420.12963
ORF1ab/nsp1118Y118YtaCtaT77B.1.177.750.007284
ORF1ab/nsp1118Y118YtaCtaT77B.1.2210.000497
ORF1ab/nsp1118Y118NTacAac66AY.40.000009
ORF1ab/nsp1118Y118CtActGc66B.10.000055
ORF1ab/nsp1118Y118YtaCtaT66B.1.10.000109
ORF1ab/nsp1118Y118HTacCac66B.1.258.170.000624
ORF1ab/nsp1118Y118XtaCtaA45All0.000001
ORF1ab/nsp1118Y118XtaCtaG15All0
ORF1ab/nsp1118Y118HTacCac55AY.1030.000031
ORF1ab/nsp1118Y118YtaCtaT55AY.1190.000177
ORF1ab/nsp1118Y118HTacCac55B.10.000046
ORF1ab/nsp1118Y118delTAC---55B.1.1.70.000004
ORF1ab/nsp1118Y118YtaCtaT55B.1.177.810.000947
ORF1ab/nsp1118Y118HTacCac55B.1.2430.000348
ORF1ab/nsp1118Y118YtaCtaT55C.180.012953
ORF1ab/nsp1118Y118delTAC---440.222222
ORF1ab/nsp1118Y118YtaCtaT44AY.200.000155
ORF1ab/nsp1118Y118CtActGc44AY.30.00004
ORF1ab/nsp1118Y118delTAC---44AY.40.000006
ORF1ab/nsp1118Y118YtaCtaT44AY.4.20.000087
ORF1ab/nsp1118Y118YtaCtaT44AY.440.000024
ORF1ab/nsp1118Y118HTacCac44AY.440.000024
ORF1ab/nsp1118Y118YtaCtaT44AY.98.10.000194
ORF1ab/nsp1118Y118YtaCtaT44B.1.1.3120.007648
ORF1ab/nsp1118Y118delTAC---44B.1.1.330.001684
ORF1ab/nsp1118Y118delTAC---44B.1.1.3480.003185
ORF1ab/nsp1118Y118DTacGac33All0.000001
ORF1ab/nsp1118Y118FtActTc33All0.000001
ORF1ab/nsp1118Y118StActCc23All0
ORF1ab/nsp1118Y118StACtCG13All0
ORF1ab/nsp1118Y118CtActGc33AY.1030.000019
ORF1ab/nsp1118Y118HTacCac33AY.30.00003
ORF1ab/nsp1118Y118YtaCtaT33AY.320.001597
ORF1ab/nsp1118Y118CtActGc33AY.40.000005
ORF1ab/nsp1118Y118HTacCac33AY.4.20.000065
ORF1ab/nsp1118Y118delTAC---33AY.430.000013
ORF1ab/nsp1118Y118YtaCtaT33AY.460.000312
ORF1ab/nsp1118Y118YtaCtaT33AY.46.40.000494
ORF1ab/nsp1118Y118HTacCac33B.1.10.000054
ORF1ab/nsp1118Y118HTacCac33B.1.1.2200.005576
ORF1ab/nsp1118Y118CtActGc33B.1.1.70.000003
ORF1ab/nsp1118Y118HTacCac33B.1.1770.00004
ORF1ab/nsp1118Y118HTacCac33B.1.177.210.000229
ORF1ab/nsp1118Y118YtaCtaT33B.1.3510.000089
ORF1ab/nsp1118Y118HTacCac33B.1.4270.000151
ORF1ab/nsp1118Y118YtaCtaT33B.1.5260.000071
ORF1ab/nsp1118Y118YtaCtaT33B.1.5750.00091
ORF1ab/nsp1118Y118YtaCtaT33B.1.5960.000261
ORF1ab/nsp1118Y118CtActGc33B.1.617.20.000011
ORF1ab/nsp1118Y118FtActTc220.111111
ORF1ab/nsp1118Y118HTacCac220.111111
ORF1ab/nsp1118Y118YtaCtaT22A.50.003846
ORF1ab/nsp1118Y118ETaCGaA22All0
ORF1ab/nsp1118Y118YtaCtaT22AY.1000.000092
ORF1ab/nsp1118Y118delTAC---22AY.250.000012
ORF1ab/nsp1118Y118YtaCtaT22AY.4.50.000215
ORF1ab/nsp1118Y118NTacAac22AY.440.000012
ORF1ab/nsp1118Y118HTacCac22AY.46.60.000144
ORF1ab/nsp1118Y118YtaCtaT22AY.50.000041
ORF1ab/nsp1118Y118YtaCtaT22AY.5.40.000553
ORF1ab/nsp1118Y118CtActGc22AY.610.00021
ORF1ab/nsp1118Y118HTacCac22AY.75.10.000361
ORF1ab/nsp1118Y118HTacCac22AY.980.000158
ORF1ab/nsp1118Y118XtaCtaG12B.10.000009
ORF1ab/nsp1118Y118XtaCtaA12B.10.000009
ORF1ab/nsp1118Y118YtaCtaT22B.1.1.3720.001377
ORF1ab/nsp1118Y118HTacCac22B.1.1.5190.000079
ORF1ab/nsp1118Y118HTacCac22B.1.177.860.000367
ORF1ab/nsp1118Y118delTAC---22B.1.20.000018
ORF1ab/nsp1118Y118CtActGc22B.1.2210.000142
ORF1ab/nsp1118Y118YtaCtaT22B.1.2430.000139
ORF1ab/nsp1118Y118YtaCtaT22B.1.2580.000133
ORF1ab/nsp1118Y118HTacCac22B.1.3510.000059
ORF1ab/nsp1118Y118HTacCac22B.1.36.380.003284
ORF1ab/nsp1118Y118YtaCtaT22B.1.4270.000101
ORF1ab/nsp1118Y118YtaCtaT22B.1.4280.002041
ORF1ab/nsp1118Y118YtaCtaT22B.1.6090.000959
ORF1ab/nsp1118Y118HTacCac22B.1.617.10.000258
ORF1ab/nsp1118Y118NTacAac22B.1.617.20.000008
ORF1ab/nsp1118Y118YtaCtaT22B.1.6370.000146
ORF1ab/nsp1118Y118HTacCac22B.1.910.004149
ORF1ab/nsp1118Y118YtaCtaT22B.400.000729
ORF1ab/nsp1118Y118delTAC---22N.40.008511
ORF1ab/nsp1118Y118delTAC---22N.60.014184
ORF1ab/nsp1118Y118delTAC---22P.20.000373
ORF1ab/nsp1118Y118TTACACA11All0
ORF1ab/nsp1118Y118GTAcGGc11All0
ORF1ab/nsp1118Y118HTacCac11AY.100.00053
ORF1ab/nsp1118Y118HTacCac11AY.1000.000046
ORF1ab/nsp1118Y118HTacCac11AY.1020.000027
ORF1ab/nsp1118Y118NTacAac11AY.1030.000006
ORF1ab/nsp1118Y118YtaCtaT11AY.1060.000335
ORF1ab/nsp1118Y118YtaCtaT11AY.1110.000183
ORF1ab/nsp1118Y118CtActGc11AY.1130.000142
ORF1ab/nsp1118Y118HTacCac11AY.1130.000142
ORF1ab/nsp1118Y118delTAC---11AY.1160.000287
ORF1ab/nsp1118Y118YtaCtaT11AY.1160.000287
ORF1ab/nsp1118Y118YtaCtaT11AY.1170.000085
ORF1ab/nsp1118Y118delTAC---11AY.120.000316
ORF1ab/nsp1118Y118CtActGc11AY.230.00007
ORF1ab/nsp1118Y118HTacCac11AY.230.00007
ORF1ab/nsp1118Y118YtaCtaT11AY.230.00007
ORF1ab/nsp1118Y118CtActGc11AY.250.000006
ORF1ab/nsp1118Y118CtActGc11AY.260.000028
ORF1ab/nsp1118Y118HTacCac11AY.270.000065
ORF1ab/nsp1118Y118YtaCtaT11AY.290.000016
ORF1ab/nsp1118Y118delTAC---11AY.30.00001
ORF1ab/nsp1118Y118CtActGc11AY.330.000067
ORF1ab/nsp1118Y118YtaCtaT11AY.34.10.00051
ORF1ab/nsp1118Y118YtaCtaT11AY.360.000148
ORF1ab/nsp1118Y118HTacCac11AY.380.000499
ORF1ab/nsp1118Y118delTAC---11AY.380.000499
ORF1ab/nsp1118Y118HTacCac11AY.390.000025
ORF1ab/nsp1118Y118CtActGc11AY.390.000025
ORF1ab/nsp1118Y118YtaCtaT11AY.39.10.00004
ORF1ab/nsp1118Y118NTacAac11AY.4.20.000022
ORF1ab/nsp1118Y118delTAC---11AY.4.50.000107
ORF1ab/nsp1118Y118HTacCac11AY.420.00004
ORF1ab/nsp1118Y118DTacGac11AY.430.000004
ORF1ab/nsp1118Y118NTacAac11AY.430.000004
ORF1ab/nsp1118Y118CtActGc11AY.430.000004
ORF1ab/nsp1118Y118XtaCtaA11AY.440.000006
ORF1ab/nsp1118Y118HTacCac11AY.450.000122
ORF1ab/nsp1118Y118HTacCac11AY.46.40.000165
ORF1ab/nsp1118Y118HTacCac11AY.50.000021
ORF1ab/nsp1118Y118HTacCac11AY.5.30.000337
ORF1ab/nsp1118Y118HTacCac11AY.520.000814
ORF1ab/nsp1118Y118NTacAac11AY.550.000917
ORF1ab/nsp1118Y118HTacCac11AY.60.000041
ORF1ab/nsp1118Y118YtaCtaT11AY.620.000436
ORF1ab/nsp1118Y118delTAC---11AY.650.000533
ORF1ab/nsp1118Y118StACtCG11AY.670.000464
ORF1ab/nsp1118Y118YtaCtaT11AY.680.000274
ORF1ab/nsp1118Y118ETaCGaA11AY.690.000187
ORF1ab/nsp1118Y118YtaCtaT11AY.7.10.000113
ORF1ab/nsp1118Y118YtaCtaT11AY.710.000475
ORF1ab/nsp1118Y118YtaCtaT11AY.750.000056
ORF1ab/nsp1118Y118YtaCtaT11AY.840.000437
ORF1ab/nsp1118Y118HTacCac11AY.90.000068
ORF1ab/nsp1118Y118delTAC---11AY.9.10.000084
ORF1ab/nsp1118Y118HTacCac11AY.9.20.000037
ORF1ab/nsp1118Y118YtaCtaT11AY.920.000287
ORF1ab/nsp1118Y118delTAC---11AY.950.000761
ORF1ab/nsp1118Y118YtaCtaT11AY.99.20.000092
ORF1ab/nsp1118Y118HTacCac11AY.99.20.000092
ORF1ab/nsp1118Y118YtaCtaT11B0.000128
ORF1ab/nsp1118Y118delTAC---11B.10.000009
ORF1ab/nsp1118Y118StActCc11B.10.000009
ORF1ab/nsp1118Y118FtActTc11B.10.000009
ORF1ab/nsp1118Y118XtaCtaA11B.1.10.000018
ORF1ab/nsp1118Y118DTacGac11B.1.10.000018
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.10.000327
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.1350.004695
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.1700.001247
ORF1ab/nsp1118Y118NTacAac11B.1.1.1700.001247
ORF1ab/nsp1118Y118CtActGc11B.1.1.1940.00495
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp1118Y118CtActGc11B.1.1.2220.000204
ORF1ab/nsp1118Y118HTacCac11B.1.1.2630.001558
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.2980.000862
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.3070.002532
ORF1ab/nsp1118Y118HTacCac11B.1.1.3180.000302
ORF1ab/nsp1118Y118HTacCac11B.1.1.3330.001076
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.3440.010753
ORF1ab/nsp1118Y118NTacAac11B.1.1.3750.011905
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.3890.006061
ORF1ab/nsp1118Y118HTacCac11B.1.1.4120.007634
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.4160.000905
ORF1ab/nsp1118Y118YtaCtaT11B.1.1.4340.000349
ORF1ab/nsp1118Y118CtActGc11B.1.1.470.005348
ORF1ab/nsp1118Y118HTacCac11B.1.1.5230.001563
ORF1ab/nsp1118Y118HTacCac11B.1.1.5280.004808
ORF1ab/nsp1118Y118ETaCGaA11B.1.1.70.000001
ORF1ab/nsp1118Y118HTacCac11B.1.160.290.004219
ORF1ab/nsp1118Y118StActCc11B.1.1770.000013
ORF1ab/nsp1118Y118YtaCtaT11B.1.177.120.000152
ORF1ab/nsp1118Y118YtaCtaT11B.1.177.210.000076
ORF1ab/nsp1118Y118delTAC---11B.1.177.40.000211
ORF1ab/nsp1118Y118CtActGc11B.1.177.440.000519
ORF1ab/nsp1118Y118delTAC---11B.1.177.540.000606
ORF1ab/nsp1118Y118HTacCac11B.1.177.650.000665
ORF1ab/nsp1118Y118HTacCac11B.1.177.750.001041
ORF1ab/nsp1118Y118delTAC---11B.1.1790.003759
ORF1ab/nsp1118Y118NTacAac11B.1.20.000009
ORF1ab/nsp1118Y118delTAC---11B.1.2110.025
ORF1ab/nsp1118Y118HTacCac11B.1.214.20.0006
ORF1ab/nsp1118Y118HTacCac11B.1.214.30.007143
ORF1ab/nsp1118Y118XtaCtaA11B.1.2210.000071
ORF1ab/nsp1118Y118YtaCtaT11B.1.2340.000132
ORF1ab/nsp1118Y118CtActGc11B.1.2340.000132
ORF1ab/nsp1118Y118TTACACA11B.1.2580.000067
ORF1ab/nsp1118Y118HTacCac11B.1.2600.003344
ORF1ab/nsp1118Y118HTacCac11B.1.3490.000715
ORF1ab/nsp1118Y118delTAC---11B.1.3510.00003
ORF1ab/nsp1118Y118delTAC---11B.1.360.000146
ORF1ab/nsp1118Y118DTacGac11B.1.360.000146
ORF1ab/nsp1118Y118YtaCtaT11B.1.36.310.001751
ORF1ab/nsp1118Y118HTacCac11B.1.36.80.001
ORF1ab/nsp1118Y118YtaCtaT11B.1.3670.000792
ORF1ab/nsp1118Y118YtaCtaT11B.1.4000.000429
ORF1ab/nsp1118Y118HTacCac11B.1.4160.001269
ORF1ab/nsp1118Y118delTAC---11B.1.4270.00005
ORF1ab/nsp1118Y118delTAC---11B.1.4290.000024
ORF1ab/nsp1118Y118HTacCac11B.1.466.20.000391
ORF1ab/nsp1118Y118NTacAac11B.1.5250.000113
ORF1ab/nsp1118Y118YtaCtaT11B.1.5560.007519
ORF1ab/nsp1118Y118YtaCtaT11B.1.5640.000426
ORF1ab/nsp1118Y118YtaCtaT11B.1.564.10.001577
ORF1ab/nsp1118Y118HTacCac11B.1.5950.000261
ORF1ab/nsp1118Y118HTacCac11B.1.5960.000087
ORF1ab/nsp1118Y118delTAC---11B.1.617.20.000004
ORF1ab/nsp1118Y118GTAcGGc11B.1.617.20.000004
ORF1ab/nsp1118Y118HTacCac11B.1.6270.00202
ORF1ab/nsp1118Y118HTacCac11B.1.6280.000352
ORF1ab/nsp1118Y118CtActGc11B.1.6340.003425
ORF1ab/nsp1118Y118NTacAac11B.1.6370.000073
ORF1ab/nsp1118Y118delTAC---11B.400.000364
ORF1ab/nsp1118Y118YtaCtaT11C.160.00106
ORF1ab/nsp1118Y118delTAC---11C.170.055556
ORF1ab/nsp1118Y118delTAC---11C.350.000774
ORF1ab/nsp1118Y118HTacCac11C.370.000116
ORF1ab/nsp1118Y118YtaCtaT11D.20.000075
ORF1ab/nsp1118Y118HTacCac11P.10.000016
ORF1ab/nsp1118Y118CtActGc11P.10.000016
ORF1ab/nsp1118Y118YtaCtaT11P.1.70.000319
ORF1ab/nsp1118Y118YtaCtaT11R.10.00009