CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 116 | V116V | V116V | syn | gtG | gtA | 7855 | 7757 | 0.987524 | 611-613 |
ORF1ab/nsp1 | 116 | V116V | V116V | syn | gtG | gtT | 7855 | 96 | 0.0122215 | 611-613 |
ORF1ab/nsp1 | 116 | V116V | V116V | syn | gtG | gtC | 7855 | 2 | 0.000254615 | 611-613 |
ORF1ab/nsp1 | 116 | V116M | V116M | nonsyn | Gtg | Atg | 644 | 644 | 1 | 611-613 |
ORF1ab/nsp1 | 116 | V116L | V116L | nonsyn | Gtg | Ttg | 282 | 277 | 0.98227 | 611-613 |
ORF1ab/nsp1 | 116 | V116L | V116L | nonsyn | Gtg | Ctg | 282 | 3 | 0.0106383 | 611-613 |
ORF1ab/nsp1 | 116 | V116L | V116L | nonsyn | GtG | CtT | 282 | 1 | 0.0035461 | 611-613 |
ORF1ab/nsp1 | 116 | V116L | V116L | nonsyn | GtG | TtA | 282 | 1 | 0.0035461 | 611-613 |
ORF1ab/nsp1 | 116 | V116A | V116A | nonsyn | gTg | gCg | 75 | 73 | 0.973333 | 611-613 |
ORF1ab/nsp1 | 116 | V116A | V116A | nonsyn | gTG | gCA | 75 | 2 | 0.0266667 | 611-613 |
ORF1ab/nsp1 | 116 | V116E | V116E | nonsyn | gTg | gAg | 69 | 69 | 1 | 611-613 |
ORF1ab/nsp1 | 116 | V116del | V116del | del | GTG | --- | 51 | 51 | 1 | 611-613 |
ORF1ab/nsp1 | 116 | V116G | V116G | nonsyn | gTg | gGg | 15 | 15 | 1 | 611-613 |
ORF1ab/nsp1 | 116 | V116del1 | V116del1 | del | gtG | gt- | 3 | 3 | 1 | 611-613 |
ORF1ab/nsp1 | 116 | V116D | V116D | nonsyn | gTG | gAC | 2 | 2 | 1 | 611-613 |
ORF1ab/nsp1 | 116 | V116H | V116H | nonsyn | GTG | CAT | 1 | 1 | 1 | 611-613 |
ORF1ab/nsp1 | 116 | V116del2 | V116del2 | del | GTG | A-- | 1 | 1 | 1 | 611-613 |
ORF1ab/nsp1 | 116 | V116T | V116T | nonsyn | GTG | ACA | 1 | 1 | 1 | 611-613 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 7757 | 7855 | All | 0.001484 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 96 | 7855 | All | 0.000018 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtC | 2 | 7855 | All | 0 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3502 | 3504 | B.1.617.2 | 0.013186 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 2 | 3504 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2697 | 2698 | AY.43 | 0.011949 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 2698 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 644 | 644 | All | 0.000123 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 320 | 320 | B.1.497 | 0.100724 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 287 | 287 | B.1.634 | 0.982877 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 277 | 282 | All | 0.000053 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ctg | 3 | 282 | All | 0.000001 |
ORF1ab/nsp1 | 116 | V116L | GtG | CtT | 1 | 282 | All | 0 |
ORF1ab/nsp1 | 116 | V116L | GtG | TtA | 1 | 282 | All | 0 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 243 | 243 | B.1.177.81 | 0.046005 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 192 | 192 | AY.39 | 0.004745 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 134 | 135 | AY.44 | 0.000816 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 135 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 104 | 104 | AY.4 | 0.000162 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 83 | 85 | AY.103 | 0.000515 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 2 | 85 | AY.103 | 0.000012 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 73 | 75 | All | 0.000014 |
ORF1ab/nsp1 | 116 | V116A | gTG | gCA | 2 | 75 | All | 0 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 69 | 69 | All | 0.000013 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 44 | 66 | B.1.1.7 | 0.000039 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 22 | 66 | B.1.1.7 | 0.00002 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 56 | 56 | B.1.1.7 | 0.00005 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 55 | 55 | B.1.429 | 0.001294 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 54 | 54 | AY.46 | 0.00562 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 51 | 51 | All | 0.00001 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 35 | 35 | AY.3 | 0.000348 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 33 | 34 | B.1 | 0.000302 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtC | 1 | 34 | B.1 | 0.000009 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 32 | 32 | B.1.1.7 | 0.000029 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 30 | 30 | AY.119 | 0.001059 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 27 | 27 | B.1.177 | 0.000356 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 26 | 26 | P.1.7 | 0.008301 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 13 | 25 | AY.5 | 0.000268 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 12 | 25 | AY.5 | 0.000248 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 18 | 23 | AY.4 | 0.000028 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 5 | 23 | AY.4 | 0.000008 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 20 | 20 | AY.5.3 | 0.006748 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 19 | 19 | AY.106 | 0.006363 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 19 | 19 | AY.44 | 0.000116 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 18 | 18 | AY.111 | 0.003297 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 17 | 17 | B.1.126 | 0.021684 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 16 | 16 | AY.46 | 0.001665 |
ORF1ab/nsp1 | 116 | V116G | gTg | gGg | 15 | 15 | All | 0.000003 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 14 | 14 | AY.5.4 | 0.003874 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 13 | 13 | B.1.1.398 | 0.041935 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 10 | 11 | AY.116 | 0.002868 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 11 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 6 | 10 | AY.25 | 0.000036 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 4 | 10 | AY.25 | 0.000024 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 5 | 10 | AY.26 | 0.000142 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 5 | 10 | AY.26 | 0.000142 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 4 | 8 | P.1 | 0.000063 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 4 | 8 | P.1 | 0.000063 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 6 | 7 | AY.100 | 0.000276 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 7 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 6 | 7 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ctg | 1 | 7 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 5 | 7 | AY.99.2 | 0.000461 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 7 | AY.99.2 | 0.000184 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 7 | 7 | P.5 | 0.09589 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp1 | 116 | V116G | gTg | gGg | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 4 | 6 | B.1.2 | 0.000035 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 2 | 6 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 5 | 6 | B.1.429 | 0.000118 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtC | 1 | 6 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 6 | 6 | B.3 | 0.004983 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 5 | 5 | AK.1 | 0.063291 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 5 | 5 | AY.1 | 0.001979 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 5 | 5 | AY.34.1 | 0.00255 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 4 | 5 | AY.42 | 0.000161 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 5 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 5 | 5 | B.1.258.11 | 0.001982 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 5 | 5 | B.1.621.1 | 0.002529 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 4 | AY.4.2 | 0.000065 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 4 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 4 | 4 | B.1.164 | 0.059701 |
ORF1ab/nsp1 | 116 | V116del1 | gtG | gt- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp1 | 116 | V116G | gTg | gGg | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 3 | AY.47 | 0.000062 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 3 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 3 | AY.93 | 0.000546 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 3 | AY.93 | 0.000273 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 2 | 3 | B.1.351 | 0.000059 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 116 | V116A | gTG | gCA | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 116 | V116D | gTG | gAC | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 116 | V116D | gTG | gAC | 2 | 2 | All | 0 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp1 | 116 | V116G | gTg | gGg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 2 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 116 | V116L | GtG | TtA | 1 | 2 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | B | 0.000256 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 2 | 2 | B.1.1.101 | 0.02 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 2 | 2 | B.1.1.462 | 0.017241 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ctg | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 116 | V116H | GTG | CAT | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 116 | V116del2 | GTG | A-- | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 116 | V116T | GTG | ACA | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ctg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp1 | 116 | V116del2 | GTG | A-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 116 | V116T | GTG | ACA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 116 | V116G | gTg | gGg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 116 | V116G | gTg | gGg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.1.270 | 0.010309 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp1 | 116 | V116G | gTg | gGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 116 | V116H | GTG | CAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 116 | V116del1 | gtG | gt- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 116 | V116del1 | gtG | gt- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 116 | V116L | GtG | CtT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 116 | V116G | gTg | gGg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 116 | V116A | gTg | gCg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp1 | 116 | V116M | Gtg | Atg | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp1 | 116 | V116del | GTG | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 116 | V116del1 | gtG | gt- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 116 | V116L | Gtg | Ttg | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp1 | 116 | V116E | gTg | gAg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp1 | 116 | V116V | gtG | gtA | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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