CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 114 & Codon = Gta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1114I114VI114VnonsynAtaGta156415600.997442605-607

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1114I114VAtaGta15601564All0.000298
ORF1ab/nsp1114I114VAtaGta580580AY.60.023855
ORF1ab/nsp1114I114VAtaGta161161B.1.258.110.063813
ORF1ab/nsp1114I114VAtaGta9192B.1.1.70.000081
ORF1ab/nsp1114I114VAtaGta8888B.1.3510.002616
ORF1ab/nsp1114I114VAtaGta7777N.50.136042
ORF1ab/nsp1114I114VAtaGta7676AY.40.000118
ORF1ab/nsp1114I114VAtaGta4041AY.430.000177
ORF1ab/nsp1114I114VAtaGta4040AY.440.000243
ORF1ab/nsp1114I114VAtaGta3334B.1.1770.000435
ORF1ab/nsp1114I114VAtaGta2828AY.1030.000174
ORF1ab/nsp1114I114VAtaGta2828B.1.617.20.000105
ORF1ab/nsp1114I114VAtaGta2323B.1.10.000417
ORF1ab/nsp1114I114VAtaGta2323P.10.000362
ORF1ab/nsp1114I114VAtaGta2020AY.250.00012
ORF1ab/nsp1114I114VAtaGta1717AY.10.006727
ORF1ab/nsp1114I114VAtaGta1717B.1.5960.001481
ORF1ab/nsp1114I114VAtaGta1616B.1.20.000141
ORF1ab/nsp1114I114VAtaGta1414B.10.000128
ORF1ab/nsp1114I114VAtaGta1414B.1.177.190.020029
ORF1ab/nsp1114I114VAtaGta1313B.1.1.1280.092199
ORF1ab/nsp1114I114VAtaGta1212B.1.2210.000852
ORF1ab/nsp1114I114VAtaGta1111B.1.1.5190.000437
ORF1ab/nsp1114I114VAtaGta88AY.330.000534
ORF1ab/nsp1114I114VAtaGta88B.1.5250.000905
ORF1ab/nsp1114I114VAtaGta77AY.50.000145
ORF1ab/nsp1114I114VAtaGta77Q.20.004294
ORF1ab/nsp1114I114VAtaGta66AY.260.00017
ORF1ab/nsp1114I114VAtaGta66B.1.177.790.014052
ORF1ab/nsp1114I114VAtaGta55AY.1020.000133
ORF1ab/nsp1114I114VAtaGta55C.370.00058
ORF1ab/nsp1114I114VAtaGta44AY.30.00004
ORF1ab/nsp1114I114VAtaGta44AY.470.000124
ORF1ab/nsp1114I114VAtaGta33AY.200.000117
ORF1ab/nsp1114I114VAtaGta33AY.290.000047
ORF1ab/nsp1114I114VAtaGta33AY.740.000347
ORF1ab/nsp1114I114VAtaGta33B.1.2580.0002
ORF1ab/nsp1114I114VAtaGta220.111111
ORF1ab/nsp1114I114VAtaGta22AY.1200.000074
ORF1ab/nsp1114I114VAtaGta22AY.320.001065
ORF1ab/nsp1114I114VAtaGta22AY.390.000049
ORF1ab/nsp1114I114VAtaGta22AY.460.000208
ORF1ab/nsp1114I114VAtaGta22AY.530.000575
ORF1ab/nsp1114I114VAtaGta22AY.75.10.000361
ORF1ab/nsp1114I114VAtaGta22B.1.1.3050.007722
ORF1ab/nsp1114I114VAtaGta12B.1.3750.00082
ORF1ab/nsp1114I114VAtaGta22B.1.4360.002058
ORF1ab/nsp1114I114VAtaGta22D.20.00015
ORF1ab/nsp1114I114VAtaGta22P.1.150.000465
ORF1ab/nsp1114I114VAtaGta11AY.1080.001103
ORF1ab/nsp1114I114VAtaGta11AY.1100.000113
ORF1ab/nsp1114I114VAtaGta11AY.1130.000142
ORF1ab/nsp1114I114VAtaGta11AY.1170.000085
ORF1ab/nsp1114I114VAtaGta11AY.120.000316
ORF1ab/nsp1114I114VAtaGta11AY.16.10.00047
ORF1ab/nsp1114I114VAtaGta11AY.29.10.000221
ORF1ab/nsp1114I114VAtaGta11AY.3.10.000085
ORF1ab/nsp1114I114VAtaGta11AY.360.000148
ORF1ab/nsp1114I114VAtaGta11AY.450.000122
ORF1ab/nsp1114I114VAtaGta11AY.630.000387
ORF1ab/nsp1114I114VAtaGta11AY.7.10.000113
ORF1ab/nsp1114I114VAtaGta11AY.750.000056
ORF1ab/nsp1114I114VAtaGta11AY.850.000427
ORF1ab/nsp1114I114VAtaGta11AY.90.000068
ORF1ab/nsp1114I114VAtaGta11AY.900.000684
ORF1ab/nsp1114I114VAtaGta11AY.930.000273
ORF1ab/nsp1114I114VAtaGta11AY.98.10.000048
ORF1ab/nsp1114I114VAtaGta11AZ.20.000821
ORF1ab/nsp1114I114VAtaGta11B.1.1.1720.018182
ORF1ab/nsp1114I114VAtaGta11B.1.1.1760.000439
ORF1ab/nsp1114I114VAtaGta11B.1.1.1920.002309
ORF1ab/nsp1114I114VAtaGta11B.1.1.2160.00089
ORF1ab/nsp1114I114VAtaGta11B.1.1.2280.003049
ORF1ab/nsp1114I114VAtaGta11B.1.1.2690.001353
ORF1ab/nsp1114I114VAtaGta11B.1.1.330.000421
ORF1ab/nsp1114I114VAtaGta11B.1.1.4320.001266
ORF1ab/nsp1114I114VAtaGta11B.1.1.4480.002033
ORF1ab/nsp1114I114VAtaGta11B.1.1.560.017857
ORF1ab/nsp1114I114VAtaGta11B.1.1600.000031
ORF1ab/nsp1114I114VAtaGta11B.1.1700.00431
ORF1ab/nsp1114I114VAtaGta11B.1.258.170.000104
ORF1ab/nsp1114I114VAtaGta11B.1.4090.000781
ORF1ab/nsp1114I114VAtaGta11B.1.4270.00005
ORF1ab/nsp1114I114VAtaGta11B.1.4290.000024
ORF1ab/nsp1114I114VAtaGta11B.1.6210.000089
ORF1ab/nsp1114I114VAtaGta11B.1.6280.000352
ORF1ab/nsp1114I114VAtaGta11B.1.6360.006711
ORF1ab/nsp1114I114VAtaGta11C.36.30.000567
ORF1ab/nsp1114I114VAtaGta11P.1.80.004785
ORF1ab/nsp1114I114VAtaGta11Q.40.000455
ORF1ab/nsp1114I114VAtaGta11Q.80.000165
ORF1ab/nsp1114I114VAtaGta11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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