CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 114 | I114V | I114V | nonsyn | Ata | Gta | 1564 | 1560 | 0.997442 | 605-607 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1560 | 1564 | All | 0.000298 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 580 | 580 | AY.6 | 0.023855 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 161 | 161 | B.1.258.11 | 0.063813 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 91 | 92 | B.1.1.7 | 0.000081 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 88 | 88 | B.1.351 | 0.002616 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 77 | 77 | N.5 | 0.136042 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 76 | 76 | AY.4 | 0.000118 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 40 | 41 | AY.43 | 0.000177 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 33 | 34 | B.1.177 | 0.000435 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 28 | 28 | AY.103 | 0.000174 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 20 | 20 | AY.25 | 0.00012 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 17 | 17 | AY.1 | 0.006727 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 17 | 17 | B.1.596 | 0.001481 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 14 | 14 | B.1.177.19 | 0.020029 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 13 | 13 | B.1.1.128 | 0.092199 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 7 | 7 | Q.2 | 0.004294 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 6 | 6 | B.1.177.79 | 0.014052 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | B.1.1.305 | 0.007722 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 2 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp1 | 114 | I114V | Ata | Gta | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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