CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 114

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1114I114TI114TnonsynaTaaCa307230721605-607
ORF1ab/nsp1114I114VI114VnonsynAtaGta156415600.997442605-607
ORF1ab/nsp1114I114VI114VnonsynAtAGtG156440.00255754605-607
ORF1ab/nsp1114I114LI114LnonsynAtaCta6796540.963181605-607
ORF1ab/nsp1114I114LI114LnonsynAtaTta679240.0353461605-607
ORF1ab/nsp1114I114LI114LnonsynAtACtC67910.00147275605-607
ORF1ab/nsp1114I114MI114MnonsynatAatG4104101605-607
ORF1ab/nsp1114I114delI114deldelATA---48481605-607
ORF1ab/nsp1114I114KI114KnonsynaTaaAa23231605-607
ORF1ab/nsp1114I114RI114RnonsynaTaaGa11111605-607
ORF1ab/nsp1114I114II114IsynatAatC960.666667605-607
ORF1ab/nsp1114I114II114IsynatAatT930.333333605-607
ORF1ab/nsp1114I114GI114GnonsynATAGGT420.5605-607
ORF1ab/nsp1114I114GI114GnonsynATaGGa420.5605-607
ORF1ab/nsp1114I114del2I114del2delaTAa--111605-607
ORF1ab/nsp1114I114del1I114del1delaTaa-a111605-607

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1114I114TaTaaCa30723072All0.000588
ORF1ab/nsp1114I114VAtaGta15601564All0.000298
ORF1ab/nsp1114I114VAtAGtG41564All0.000001
ORF1ab/nsp1114I114TaTaaCa952952B.1.1.70.000852
ORF1ab/nsp1114I114LAtaCta654679All0.000125
ORF1ab/nsp1114I114LAtaTta24679All0.000005
ORF1ab/nsp1114I114LAtACtC1679All0
ORF1ab/nsp1114I114VAtaGta580580AY.60.023855
ORF1ab/nsp1114I114LAtaCta532533B.1.2210.037789
ORF1ab/nsp1114I114LAtaTta1533B.1.2210.000071
ORF1ab/nsp1114I114TaTaaCa451451B.1.1110.529965
ORF1ab/nsp1114I114MatAatG410410All0.000078
ORF1ab/nsp1114I114TaTaaCa271271AY.40.000422
ORF1ab/nsp1114I114MatAatG220220AY.40.000342
ORF1ab/nsp1114I114TaTaaCa204204B.1.5250.023085
ORF1ab/nsp1114I114VAtaGta161161B.1.258.110.063813
ORF1ab/nsp1114I114TaTaaCa128128AY.250.00077
ORF1ab/nsp1114I114TaTaaCa125125B.1.2580.008318
ORF1ab/nsp1114I114VAtaGta9192B.1.1.70.000081
ORF1ab/nsp1114I114VAtAGtG192B.1.1.70.000001
ORF1ab/nsp1114I114TaTaaCa9191B.1.617.20.000343
ORF1ab/nsp1114I114VAtaGta8888B.1.3510.002616
ORF1ab/nsp1114I114VAtaGta7777N.50.136042
ORF1ab/nsp1114I114VAtaGta7676AY.40.000118
ORF1ab/nsp1114I114TaTaaCa6969B.1.20.000608
ORF1ab/nsp1114I114TaTaaCa6565B.1.4290.001529
ORF1ab/nsp1114I114TaTaaCa4949B.10.000449
ORF1ab/nsp1114I114delATA---4848All0.000009
ORF1ab/nsp1114I114MatAatG4747AY.250.000283
ORF1ab/nsp1114I114MatAatG4343AY.70.008428
ORF1ab/nsp1114I114VAtaGta4041AY.430.000177
ORF1ab/nsp1114I114VAtAGtG141AY.430.000004
ORF1ab/nsp1114I114VAtaGta4040AY.440.000243
ORF1ab/nsp1114I114TaTaaCa3939AY.1030.000242
ORF1ab/nsp1114I114TaTaaCa3939AY.430.000173
ORF1ab/nsp1114I114TaTaaCa3636AY.800.040632
ORF1ab/nsp1114I114TaTaaCa3535AY.440.000213
ORF1ab/nsp1114I114LAtaCta3434AY.950.025875
ORF1ab/nsp1114I114VAtaGta3334B.1.1770.000435
ORF1ab/nsp1114I114VAtAGtG134B.1.1770.000013
ORF1ab/nsp1114I114VAtaGta2828AY.1030.000174
ORF1ab/nsp1114I114VAtaGta2828B.1.617.20.000105
ORF1ab/nsp1114I114TaTaaCa2727B.1.1.5190.001072
ORF1ab/nsp1114I114LAtaCta1927B.1.1.70.000017
ORF1ab/nsp1114I114LAtaTta827B.1.1.70.000007
ORF1ab/nsp1114I114KaTaaAa2323All0.000004
ORF1ab/nsp1114I114VAtaGta2323B.1.10.000417
ORF1ab/nsp1114I114VAtaGta2323P.10.000362
ORF1ab/nsp1114I114LAtaCta2222B.1.177.870.016012
ORF1ab/nsp1114I114TaTaaCa2222B.1.2430.001531
ORF1ab/nsp1114I114TaTaaCa2121P.10.000331
ORF1ab/nsp1114I114VAtaGta2020AY.250.00012
ORF1ab/nsp1114I114TaTaaCa2020B.1.10.000363
ORF1ab/nsp1114I114TaTaaCa1818B.1.5750.005461
ORF1ab/nsp1114I114VAtaGta1717AY.10.006727
ORF1ab/nsp1114I114VAtaGta1717B.1.5960.001481
ORF1ab/nsp1114I114MatAatG1616B.1.1.1920.036952
ORF1ab/nsp1114I114VAtaGta1616B.1.20.000141
ORF1ab/nsp1114I114TaTaaCa1414AY.990.01469
ORF1ab/nsp1114I114VAtaGta1414B.10.000128
ORF1ab/nsp1114I114VAtaGta1414B.1.177.190.020029
ORF1ab/nsp1114I114TaTaaCa1414B.4.70.141414
ORF1ab/nsp1114I114VAtaGta1313B.1.1.1280.092199
ORF1ab/nsp1114I114TaTaaCa1212AY.580.010889
ORF1ab/nsp1114I114VAtaGta1212B.1.2210.000852
ORF1ab/nsp1114I114RaTaaGa1111All0.000002
ORF1ab/nsp1114I114TaTaaCa1111AY.30.000109
ORF1ab/nsp1114I114VAtaGta1111B.1.1.5190.000437
ORF1ab/nsp1114I114TaTaaCa1010AY.1100.001127
ORF1ab/nsp1114I114TaTaaCa1010AY.1190.000353
ORF1ab/nsp1114I114TaTaaCa1010AY.390.000247
ORF1ab/nsp1114I114MatAatG1010B.1.1770.000132
ORF1ab/nsp1114I114IatAatC69All0.000001
ORF1ab/nsp1114I114IatAatT39All0.000001
ORF1ab/nsp1114I114TaTaaCa99AY.860.007469
ORF1ab/nsp1114I114TaTaaCa99B.1.3510.000268
ORF1ab/nsp1114I114TaTaaCa99B.1.5960.000784
ORF1ab/nsp1114I114TaTaaCa88AY.200.000311
ORF1ab/nsp1114I114TaTaaCa88AY.260.000226
ORF1ab/nsp1114I114VAtaGta88AY.330.000534
ORF1ab/nsp1114I114LAtaCta88AY.430.000035
ORF1ab/nsp1114I114MatAatG88B.10.000073
ORF1ab/nsp1114I114MatAatG88B.1.1.70.000007
ORF1ab/nsp1114I114VAtaGta88B.1.5250.000905
ORF1ab/nsp1114I114TaTaaCa88Q.10.001011
ORF1ab/nsp1114I114TaTaaCa77AH.11
ORF1ab/nsp1114I114TaTaaCa77AY.1000.000322
ORF1ab/nsp1114I114LAtaTta77AY.1110.001282
ORF1ab/nsp1114I114MatAatG77AY.290.00011
ORF1ab/nsp1114I114VAtaGta77AY.50.000145
ORF1ab/nsp1114I114LAtaCta57B.10.000046
ORF1ab/nsp1114I114LAtaTta27B.10.000018
ORF1ab/nsp1114I114MatAatG77B.1.20.000062
ORF1ab/nsp1114I114TaTaaCa77B.1.438.40.148936
ORF1ab/nsp1114I114TaTaaCa77P.1.140.000335
ORF1ab/nsp1114I114VAtaGta77Q.20.004294
ORF1ab/nsp1114I114TaTaaCa66AY.1020.000159
ORF1ab/nsp1114I114VAtaGta66AY.260.00017
ORF1ab/nsp1114I114LAtaCta66AY.3.10.000512
ORF1ab/nsp1114I114TaTaaCa66AY.4.20.00013
ORF1ab/nsp1114I114TaTaaCa66AY.4.50.000645
ORF1ab/nsp1114I114MatAatG66AY.440.000037
ORF1ab/nsp1114I114TaTaaCa66B.1.177.200.009105
ORF1ab/nsp1114I114TaTaaCa66B.1.177.210.000459
ORF1ab/nsp1114I114VAtaGta66B.1.177.790.014052
ORF1ab/nsp1114I114TaTaaCa66B.1.6280.002114
ORF1ab/nsp1114I114VAtaGta55AY.1020.000133
ORF1ab/nsp1114I114TaTaaCa55AY.1180.000313
ORF1ab/nsp1114I114LAtaCta55AY.40.000008
ORF1ab/nsp1114I114TaTaaCa55AY.4.40.002046
ORF1ab/nsp1114I114TaTaaCa55AY.9.20.000184
ORF1ab/nsp1114I114TaTaaCa55AY.99.20.000461
ORF1ab/nsp1114I114delATA---55B.1.1.70.000004
ORF1ab/nsp1114I114TaTaaCa55B.1.5260.000118
ORF1ab/nsp1114I114TaTaaCa55B.1.6210.000443
ORF1ab/nsp1114I114TaTaaCa55B.1.6370.000365
ORF1ab/nsp1114I114VAtaGta55C.370.00058
ORF1ab/nsp1114I114TaTaaCa55P.1.150.001162
ORF1ab/nsp1114I114GATaGGa24All0
ORF1ab/nsp1114I114GATAGGT24All0
ORF1ab/nsp1114I114MatAatG44AY.1020.000106
ORF1ab/nsp1114I114TaTaaCa44AY.1070.001864
ORF1ab/nsp1114I114TaTaaCa44AY.1200.000149
ORF1ab/nsp1114I114TaTaaCa44AY.290.000063
ORF1ab/nsp1114I114VAtaGta44AY.30.00004
ORF1ab/nsp1114I114TaTaaCa44AY.330.000267
ORF1ab/nsp1114I114delATA---44AY.40.000006
ORF1ab/nsp1114I114VAtaGta44AY.470.000124
ORF1ab/nsp1114I114TaTaaCa44AY.470.000124
ORF1ab/nsp1114I114TaTaaCa44AY.60.000165
ORF1ab/nsp1114I114TaTaaCa44AY.610.000419
ORF1ab/nsp1114I114TaTaaCa44AY.750.000224
ORF1ab/nsp1114I114TaTaaCa44AY.950.003044
ORF1ab/nsp1114I114TaTaaCa44B.1.1.1410.008048
ORF1ab/nsp1114I114delATA---44B.1.1.330.001684
ORF1ab/nsp1114I114TaTaaCa44B.1.1.330.001684
ORF1ab/nsp1114I114delATA---44B.1.1.3480.003185
ORF1ab/nsp1114I114TaTaaCa44B.1.1770.000053
ORF1ab/nsp1114I114KaTaaAa44B.1.2580.000266
ORF1ab/nsp1114I114TaTaaCa44B.1.3490.002859
ORF1ab/nsp1114I114TaTaaCa44B.1.5170.001708
ORF1ab/nsp1114I114LAtaCta44B.1.617.20.000015
ORF1ab/nsp1114I114LAtaCta44B.1.6190.003484
ORF1ab/nsp1114I114RaTaaGa33A.50.005769
ORF1ab/nsp1114I114TaTaaCa33AD.20.000657
ORF1ab/nsp1114I114TaTaaCa33AY.1110.000549
ORF1ab/nsp1114I114MatAatG33AY.1190.000106
ORF1ab/nsp1114I114TaTaaCa33AY.160.001139
ORF1ab/nsp1114I114VAtaGta33AY.200.000117
ORF1ab/nsp1114I114TaTaaCa33AY.270.000194
ORF1ab/nsp1114I114VAtaGta33AY.290.000047
ORF1ab/nsp1114I114TaTaaCa33AY.340.000291
ORF1ab/nsp1114I114TaTaaCa33AY.39.10.000119
ORF1ab/nsp1114I114MatAatG33AY.430.000013
ORF1ab/nsp1114I114TaTaaCa33AY.50.000062
ORF1ab/nsp1114I114KaTaaAa33AY.60.000123
ORF1ab/nsp1114I114VAtaGta33AY.740.000347
ORF1ab/nsp1114I114TaTaaCa33AY.90.000203
ORF1ab/nsp1114I114TaTaaCa33AY.980.000237
ORF1ab/nsp1114I114KaTaaAa33B.1.1.70.000003
ORF1ab/nsp1114I114RaTaaGa33B.1.2430.000209
ORF1ab/nsp1114I114VAtaGta33B.1.2580.0002
ORF1ab/nsp1114I114MatAatG33B.1.617.20.000011
ORF1ab/nsp1114I114TaTaaCa33D.20.000225
ORF1ab/nsp1114I114VAtaGta220.111111
ORF1ab/nsp1114I114GATAGGT220.111111
ORF1ab/nsp1114I114IatAatT120.055556
ORF1ab/nsp1114I114IatAatC120.055556
ORF1ab/nsp1114I114TaTaaCa22A0.000774
ORF1ab/nsp1114I114TaTaaCa22AY.100.00106
ORF1ab/nsp1114I114KaTaaAa22AY.1030.000012
ORF1ab/nsp1114I114VAtaGta22AY.1200.000074
ORF1ab/nsp1114I114delATA---22AY.250.000012
ORF1ab/nsp1114I114MatAatG22AY.30.00002
ORF1ab/nsp1114I114VAtaGta22AY.320.001065
ORF1ab/nsp1114I114TaTaaCa22AY.370.000632
ORF1ab/nsp1114I114VAtaGta22AY.390.000049
ORF1ab/nsp1114I114delATA---22AY.430.000009
ORF1ab/nsp1114I114LAtaCta22AY.440.000012
ORF1ab/nsp1114I114TaTaaCa22AY.450.000243
ORF1ab/nsp1114I114TaTaaCa22AY.460.000208
ORF1ab/nsp1114I114VAtaGta22AY.460.000208
ORF1ab/nsp1114I114MatAatG22AY.46.60.000144
ORF1ab/nsp1114I114VAtaGta22AY.530.000575
ORF1ab/nsp1114I114VAtaGta22AY.75.10.000361
ORF1ab/nsp1114I114TaTaaCa22AY.880.001768
ORF1ab/nsp1114I114TaTaaCa22AY.920.000575
ORF1ab/nsp1114I114TaTaaCa22AY.98.10.000097
ORF1ab/nsp1114I114TaTaaCa22B0.000256
ORF1ab/nsp1114I114VAtaGta22B.1.1.3050.007722
ORF1ab/nsp1114I114LAtaTta22B.1.1.3060.000877
ORF1ab/nsp1114I114TaTaaCa22B.1.1.370.000386
ORF1ab/nsp1114I114KaTaaAa22B.1.1770.000026
ORF1ab/nsp1114I114TaTaaCa22B.1.177.730.001133
ORF1ab/nsp1114I114delATA---22B.1.20.000018
ORF1ab/nsp1114I114TaTaaCa22B.1.2210.000142
ORF1ab/nsp1114I114MatAatG22B.1.2580.000133
ORF1ab/nsp1114I114VAtAGtG12B.1.3750.00082
ORF1ab/nsp1114I114VAtaGta12B.1.3750.00082
ORF1ab/nsp1114I114TaTaaCa22B.1.4270.000101
ORF1ab/nsp1114I114VAtaGta22B.1.4360.002058
ORF1ab/nsp1114I114TaTaaCa22B.1.4990.002101
ORF1ab/nsp1114I114TaTaaCa22B.1.5090.001732
ORF1ab/nsp1114I114TaTaaCa22B.1.617.10.000258
ORF1ab/nsp1114I114TaTaaCa22C.370.000232
ORF1ab/nsp1114I114VAtaGta22D.20.00015
ORF1ab/nsp1114I114delATA---22N.40.008511
ORF1ab/nsp1114I114delATA---22N.60.014184
ORF1ab/nsp1114I114VAtaGta22P.1.150.000465
ORF1ab/nsp1114I114delATA---22P.20.000373
ORF1ab/nsp1114I114TaTaaCa22Q.80.00033
ORF1ab/nsp1114I114MatAatG11A.20.000662
ORF1ab/nsp1114I114del2aTAa--11All0
ORF1ab/nsp1114I114del1aTaa-a11All0
ORF1ab/nsp1114I114LAtaTta11AY.1020.000027
ORF1ab/nsp1114I114MatAatG11AY.1030.000006
ORF1ab/nsp1114I114IatAatC11AY.1030.000006
ORF1ab/nsp1114I114RaTaaGa11AY.1030.000006
ORF1ab/nsp1114I114VAtaGta11AY.1080.001103
ORF1ab/nsp1114I114VAtaGta11AY.1100.000113
ORF1ab/nsp1114I114VAtaGta11AY.1130.000142
ORF1ab/nsp1114I114TaTaaCa11AY.1160.000287
ORF1ab/nsp1114I114delATA---11AY.1160.000287
ORF1ab/nsp1114I114TaTaaCa11AY.116.10.000311
ORF1ab/nsp1114I114VAtaGta11AY.1170.000085
ORF1ab/nsp1114I114TaTaaCa11AY.1170.000085
ORF1ab/nsp1114I114VAtaGta11AY.120.000316
ORF1ab/nsp1114I114delATA---11AY.120.000316
ORF1ab/nsp1114I114TaTaaCa11AY.120.000316
ORF1ab/nsp1114I114MatAatG11AY.1200.000037
ORF1ab/nsp1114I114LAtaCta11AY.1200.000037
ORF1ab/nsp1114I114TaTaaCa11AY.1210.000135
ORF1ab/nsp1114I114TaTaaCa11AY.140.000088
ORF1ab/nsp1114I114VAtaGta11AY.16.10.00047
ORF1ab/nsp1114I114TaTaaCa11AY.20.000356
ORF1ab/nsp1114I114GATaGGa11AY.230.00007
ORF1ab/nsp1114I114TaTaaCa11AY.230.00007
ORF1ab/nsp1114I114MatAatG11AY.240.000431
ORF1ab/nsp1114I114LAtaCta11AY.250.000006
ORF1ab/nsp1114I114VAtaGta11AY.29.10.000221
ORF1ab/nsp1114I114del2aTAa--11AY.30.00001
ORF1ab/nsp1114I114VAtaGta11AY.3.10.000085
ORF1ab/nsp1114I114MatAatG11AY.320.000532
ORF1ab/nsp1114I114TaTaaCa11AY.34.10.00051
ORF1ab/nsp1114I114VAtaGta11AY.360.000148
ORF1ab/nsp1114I114KaTaaAa11AY.360.000148
ORF1ab/nsp1114I114delATA---11AY.380.000499
ORF1ab/nsp1114I114TaTaaCa11AY.380.000499
ORF1ab/nsp1114I114KaTaaAa11AY.40.000002
ORF1ab/nsp1114I114delATA---11AY.4.50.000107
ORF1ab/nsp1114I114GATaGGa11AY.430.000004
ORF1ab/nsp1114I114VAtaGta11AY.450.000122
ORF1ab/nsp1114I114TaTaaCa11AY.46.60.000072
ORF1ab/nsp1114I114TaTaaCa11AY.5.30.000337
ORF1ab/nsp1114I114TaTaaCa11AY.5.40.000277
ORF1ab/nsp1114I114TaTaaCa11AY.570.000656
ORF1ab/nsp1114I114VAtaGta11AY.630.000387
ORF1ab/nsp1114I114delATA---11AY.650.000533
ORF1ab/nsp1114I114LAtACtC11AY.670.000464
ORF1ab/nsp1114I114VAtaGta11AY.7.10.000113
ORF1ab/nsp1114I114TaTaaCa11AY.700.000209
ORF1ab/nsp1114I114TaTaaCa11AY.740.000116
ORF1ab/nsp1114I114VAtaGta11AY.750.000056
ORF1ab/nsp1114I114MatAatG11AY.750.000056
ORF1ab/nsp1114I114TaTaaCa11AY.75.10.00018
ORF1ab/nsp1114I114KaTaaAa11AY.80.000606
ORF1ab/nsp1114I114VAtaGta11AY.850.000427
ORF1ab/nsp1114I114VAtaGta11AY.90.000068
ORF1ab/nsp1114I114delATA---11AY.9.10.000084
ORF1ab/nsp1114I114VAtaGta11AY.900.000684
ORF1ab/nsp1114I114MatAatG11AY.920.000287
ORF1ab/nsp1114I114VAtaGta11AY.930.000273
ORF1ab/nsp1114I114MatAatG11AY.930.000273
ORF1ab/nsp1114I114LAtaCta11AY.930.000273
ORF1ab/nsp1114I114delATA---11AY.950.000761
ORF1ab/nsp1114I114VAtaGta11AY.98.10.000048
ORF1ab/nsp1114I114LAtaCta11AY.99.20.000092
ORF1ab/nsp1114I114VAtaGta11AZ.20.000821
ORF1ab/nsp1114I114RaTaaGa11B.10.000009
ORF1ab/nsp1114I114delATA---11B.10.000009
ORF1ab/nsp1114I114LAtaCta11B.1.10.000018
ORF1ab/nsp1114I114KaTaaAa11B.1.10.000018
ORF1ab/nsp1114I114TaTaaCa11B.1.1.1350.004695
ORF1ab/nsp1114I114VAtaGta11B.1.1.1720.018182
ORF1ab/nsp1114I114VAtaGta11B.1.1.1760.000439
ORF1ab/nsp1114I114VAtaGta11B.1.1.1920.002309
ORF1ab/nsp1114I114VAtaGta11B.1.1.2160.00089
ORF1ab/nsp1114I114TaTaaCa11B.1.1.2220.000204
ORF1ab/nsp1114I114VAtaGta11B.1.1.2280.003049
ORF1ab/nsp1114I114VAtaGta11B.1.1.2690.001353
ORF1ab/nsp1114I114TaTaaCa11B.1.1.280.000311
ORF1ab/nsp1114I114TaTaaCa11B.1.1.3160.000925
ORF1ab/nsp1114I114VAtaGta11B.1.1.330.000421
ORF1ab/nsp1114I114KaTaaAa11B.1.1.3370.003597
ORF1ab/nsp1114I114LAtaTta11B.1.1.3470.018182
ORF1ab/nsp1114I114TaTaaCa11B.1.1.3980.003226
ORF1ab/nsp1114I114TaTaaCa11B.1.1.4010.066667
ORF1ab/nsp1114I114VAtaGta11B.1.1.4320.001266
ORF1ab/nsp1114I114VAtaGta11B.1.1.4480.002033
ORF1ab/nsp1114I114MatAatG11B.1.1.460.004367
ORF1ab/nsp1114I114LAtaCta11B.1.1.5190.00004
ORF1ab/nsp1114I114MatAatG11B.1.1.5190.00004
ORF1ab/nsp1114I114VAtaGta11B.1.1.560.017857
ORF1ab/nsp1114I114IatAatC11B.1.1.70.000001
ORF1ab/nsp1114I114TaTaaCa11B.1.1580.02381
ORF1ab/nsp1114I114VAtaGta11B.1.1600.000031
ORF1ab/nsp1114I114TaTaaCa11B.1.1600.000031
ORF1ab/nsp1114I114VAtaGta11B.1.1700.00431
ORF1ab/nsp1114I114delATA---11B.1.1770.000013
ORF1ab/nsp1114I114IatAatT11B.1.1770.000013
ORF1ab/nsp1114I114KaTaaAa11B.1.177.150.000631
ORF1ab/nsp1114I114delATA---11B.1.177.40.000211
ORF1ab/nsp1114I114TaTaaCa11B.1.177.570.000281
ORF1ab/nsp1114I114TaTaaCa11B.1.177.80.000752
ORF1ab/nsp1114I114TaTaaCa11B.1.177.860.000183
ORF1ab/nsp1114I114delATA---11B.1.1790.003759
ORF1ab/nsp1114I114RaTaaGa11B.1.20.000009
ORF1ab/nsp1114I114del1aTaa-a11B.1.20.000009
ORF1ab/nsp1114I114RaTaaGa11B.1.2060.000816
ORF1ab/nsp1114I114delATA---11B.1.2110.025
ORF1ab/nsp1114I114MatAatG11B.1.2210.000071
ORF1ab/nsp1114I114IatAatC11B.1.230.006061
ORF1ab/nsp1114I114LAtaCta11B.1.2340.000132
ORF1ab/nsp1114I114TaTaaCa11B.1.2400.000216
ORF1ab/nsp1114I114IatAatC11B.1.2430.00007
ORF1ab/nsp1114I114TaTaaCa11B.1.2470.014925
ORF1ab/nsp1114I114TaTaaCa11B.1.258.140.00098
ORF1ab/nsp1114I114VAtaGta11B.1.258.170.000104
ORF1ab/nsp1114I114delATA---11B.1.3510.00003
ORF1ab/nsp1114I114KaTaaAa11B.1.3510.00003
ORF1ab/nsp1114I114LAtaCta11B.1.351.20.000303
ORF1ab/nsp1114I114TaTaaCa11B.1.360.000146
ORF1ab/nsp1114I114delATA---11B.1.360.000146
ORF1ab/nsp1114I114TaTaaCa11B.1.36.310.001751
ORF1ab/nsp1114I114TaTaaCa11B.1.3610.001289
ORF1ab/nsp1114I114TaTaaCa11B.1.3670.000792
ORF1ab/nsp1114I114RaTaaGa11B.1.3690.000285
ORF1ab/nsp1114I114MatAatG11B.1.3750.00082
ORF1ab/nsp1114I114TaTaaCa11B.1.3910.001127
ORF1ab/nsp1114I114TaTaaCa11B.1.4080.00369
ORF1ab/nsp1114I114VAtaGta11B.1.4090.000781
ORF1ab/nsp1114I114TaTaaCa11B.1.4160.001269
ORF1ab/nsp1114I114delATA---11B.1.4270.00005
ORF1ab/nsp1114I114VAtaGta11B.1.4270.00005
ORF1ab/nsp1114I114MatAatG11B.1.4270.00005
ORF1ab/nsp1114I114delATA---11B.1.4290.000024
ORF1ab/nsp1114I114VAtaGta11B.1.4290.000024
ORF1ab/nsp1114I114KaTaaAa11B.1.4290.000024
ORF1ab/nsp1114I114TaTaaCa11B.1.440.008333
ORF1ab/nsp1114I114TaTaaCa11B.1.4590.004082
ORF1ab/nsp1114I114TaTaaCa11B.1.466.20.000391
ORF1ab/nsp1114I114TaTaaCa11B.1.4680.005714
ORF1ab/nsp1114I114LAtaTta11B.1.517.10.005263
ORF1ab/nsp1114I114MatAatG11B.1.5450.014493
ORF1ab/nsp1114I114LAtaCta11B.1.5510.00129
ORF1ab/nsp1114I114MatAatG11B.1.5640.000426
ORF1ab/nsp1114I114MatAatG11B.1.564.10.001577
ORF1ab/nsp1114I114TaTaaCa11B.1.5680.001111
ORF1ab/nsp1114I114TaTaaCa11B.1.5820.000491
ORF1ab/nsp1114I114IatAatC11B.1.5960.000087
ORF1ab/nsp1114I114LAtaCta11B.1.5960.000087
ORF1ab/nsp1114I114LAtaCta11B.1.617.10.000129
ORF1ab/nsp1114I114delATA---11B.1.617.20.000004
ORF1ab/nsp1114I114KaTaaAa11B.1.617.20.000004
ORF1ab/nsp1114I114TaTaaCa11B.1.6200.000946
ORF1ab/nsp1114I114VAtaGta11B.1.6210.000089
ORF1ab/nsp1114I114TaTaaCa11B.1.6250.002353
ORF1ab/nsp1114I114MatAatG11B.1.6270.00202
ORF1ab/nsp1114I114VAtaGta11B.1.6280.000352
ORF1ab/nsp1114I114VAtaGta11B.1.6360.006711
ORF1ab/nsp1114I114TaTaaCa11B.30.000831
ORF1ab/nsp1114I114LAtaTta11C.160.00106
ORF1ab/nsp1114I114TaTaaCa11C.160.00106
ORF1ab/nsp1114I114delATA---11C.170.055556
ORF1ab/nsp1114I114delATA---11C.350.000774
ORF1ab/nsp1114I114TaTaaCa11C.360.000911
ORF1ab/nsp1114I114VAtaGta11C.36.30.000567
ORF1ab/nsp1114I114IatAatT11D.20.000075
ORF1ab/nsp1114I114LAtaCta11N.20.038462
ORF1ab/nsp1114I114LAtaCta11P.10.000016
ORF1ab/nsp1114I114MatAatG11P.10.000016
ORF1ab/nsp1114I114TaTaaCa11P.1.120.000484
ORF1ab/nsp1114I114TaTaaCa11P.1.70.000319
ORF1ab/nsp1114I114VAtaGta11P.1.80.004785
ORF1ab/nsp1114I114TaTaaCa11Q.40.000455
ORF1ab/nsp1114I114VAtaGta11Q.40.000455
ORF1ab/nsp1114I114VAtaGta11Q.80.000165
ORF1ab/nsp1114I114VAtaGta11R.10.00009
ORF1ab/nsp1114I114MatAatG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.