CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 113 & Codon = gaG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1113E113EE113EsyngaAgaG4314311602-604

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1113E113EgaAgaG431431All0.000082
ORF1ab/nsp1113E113EgaAgaG142142B.1.1.4130.97931
ORF1ab/nsp1113E113EgaAgaG3535AY.99.20.003226
ORF1ab/nsp1113E113EgaAgaG2929AY.1190.001024
ORF1ab/nsp1113E113EgaAgaG2626B.1.1.4511
ORF1ab/nsp1113E113EgaAgaG2525B.1.5260.000588
ORF1ab/nsp1113E113EgaAgaG2121AY.1210.002842
ORF1ab/nsp1113E113EgaAgaG1919AY.40.00003
ORF1ab/nsp1113E113EgaAgaG1919B.1.10.000345
ORF1ab/nsp1113E113EgaAgaG1616B.1.1.70.000014
ORF1ab/nsp1113E113EgaAgaG1616B.1.617.20.00006
ORF1ab/nsp1113E113EgaAgaG1010R.10.0009
ORF1ab/nsp1113E113EgaAgaG99AY.9.20.000331
ORF1ab/nsp1113E113EgaAgaG77B.1.20.000062
ORF1ab/nsp1113E113EgaAgaG77P.10.00011
ORF1ab/nsp1113E113EgaAgaG55B.10.000046
ORF1ab/nsp1113E113EgaAgaG44B.1.1770.000053
ORF1ab/nsp1113E113EgaAgaG33AY.250.000018
ORF1ab/nsp1113E113EgaAgaG33AY.290.000047
ORF1ab/nsp1113E113EgaAgaG22AY.440.000012
ORF1ab/nsp1113E113EgaAgaG22AY.46.60.000144
ORF1ab/nsp1113E113EgaAgaG22B.1.2390.002442
ORF1ab/nsp1113E113EgaAgaG22B.1.4290.000047
ORF1ab/nsp1113E113EgaAgaG22B.1.5250.000226
ORF1ab/nsp1113E113EgaAgaG22B.1.6210.000177
ORF1ab/nsp1113E113EgaAgaG22C.360.001821
ORF1ab/nsp1113E113EgaAgaG11AY.230.00007
ORF1ab/nsp1113E113EgaAgaG11AY.260.000028
ORF1ab/nsp1113E113EgaAgaG11AY.270.000065
ORF1ab/nsp1113E113EgaAgaG11AY.390.000025
ORF1ab/nsp1113E113EgaAgaG11AY.4.20.000022
ORF1ab/nsp1113E113EgaAgaG11AY.430.000004
ORF1ab/nsp1113E113EgaAgaG11AY.46.20.000635
ORF1ab/nsp1113E113EgaAgaG11AY.900.000684
ORF1ab/nsp1113E113EgaAgaG11B0.000128
ORF1ab/nsp1113E113EgaAgaG11B.1.1.160.055556
ORF1ab/nsp1113E113EgaAgaG11B.1.1.1740.003378
ORF1ab/nsp1113E113EgaAgaG11B.1.1.1980.001468
ORF1ab/nsp1113E113EgaAgaG11B.1.1.3160.000925
ORF1ab/nsp1113E113EgaAgaG11B.1.1.3260.001761
ORF1ab/nsp1113E113EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp1113E113EgaAgaG11B.1.1.990.02381
ORF1ab/nsp1113E113EgaAgaG11B.1.2600.003344
ORF1ab/nsp1113E113EgaAgaG11B.1.360.000146
ORF1ab/nsp1113E113EgaAgaG11B.1.5960.000087
ORF1ab/nsp1113E113EgaAgaG11B.1.621.10.000506
ORF1ab/nsp1113E113EgaAgaG11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.