CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 113 | E113E | E113E | syn | gaA | gaG | 431 | 431 | 1 | 602-604 |
ORF1ab/nsp1 | 113 | E113K | E113K | nonsyn | Gaa | Aaa | 199 | 198 | 0.994975 | 602-604 |
ORF1ab/nsp1 | 113 | E113K | E113K | nonsyn | GaA | AaG | 199 | 1 | 0.00502513 | 602-604 |
ORF1ab/nsp1 | 113 | E113G | E113G | nonsyn | gAa | gGa | 162 | 162 | 1 | 602-604 |
ORF1ab/nsp1 | 113 | E113D | E113D | nonsyn | gaA | gaC | 63 | 35 | 0.555556 | 602-604 |
ORF1ab/nsp1 | 113 | E113D | E113D | nonsyn | gaA | gaT | 63 | 28 | 0.444444 | 602-604 |
ORF1ab/nsp1 | 113 | E113del | E113del | del | GAA | --- | 48 | 48 | 1 | 602-604 |
ORF1ab/nsp1 | 113 | E113A | E113A | nonsyn | gAa | gCa | 42 | 42 | 1 | 602-604 |
ORF1ab/nsp1 | 113 | E113Q | E113Q | nonsyn | Gaa | Caa | 29 | 29 | 1 | 602-604 |
ORF1ab/nsp1 | 113 | E113X | E113X | nonsyn | Gaa | Taa | 15 | 15 | 1 | 602-604 |
ORF1ab/nsp1 | 113 | E113V | E113V | nonsyn | gAa | gTa | 10 | 10 | 1 | 602-604 |
ORF1ab/nsp1 | 113 | E113del1 | E113del1 | del | gAa | g-a | 7 | 4 | 0.571429 | 602-604 |
ORF1ab/nsp1 | 113 | E113del1 | E113del1 | del | Gaa | -aa | 7 | 2 | 0.285714 | 602-604 |
ORF1ab/nsp1 | 113 | E113del1 | E113del1 | del | gAA | g-N | 7 | 1 | 0.142857 | 602-604 |
ORF1ab/nsp1 | 113 | E113M | E113M | nonsyn | GAA | ATG | 1 | 1 | 1 | 602-604 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 431 | 431 | All | 0.000082 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 198 | 199 | All | 0.000038 |
ORF1ab/nsp1 | 113 | E113K | GaA | AaG | 1 | 199 | All | 0 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 162 | 162 | All | 0.000031 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 142 | 142 | B.1.1.413 | 0.97931 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 84 | 84 | B.1.1.7 | 0.000075 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 35 | 63 | All | 0.000007 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaT | 28 | 63 | All | 0.000005 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 48 | 48 | All | 0.000009 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 47 | 47 | AY.4 | 0.000073 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 42 | 42 | All | 0.000008 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 35 | 35 | AY.99.2 | 0.003226 |
ORF1ab/nsp1 | 113 | E113Q | Gaa | Caa | 29 | 29 | All | 0.000006 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 29 | 29 | AY.119 | 0.001024 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 26 | 26 | B.1.1.451 | 1 |
ORF1ab/nsp1 | 113 | E113Q | Gaa | Caa | 25 | 25 | AY.43 | 0.000111 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 25 | 25 | B.1.526 | 0.000588 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 21 | 21 | AY.121 | 0.002842 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 19 | 19 | B.1.1 | 0.000345 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 18 | 19 | B.1.1.7 | 0.000016 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaT | 1 | 19 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaT | 17 | 17 | B.1.587 | 0.032258 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp1 | 113 | E113X | Gaa | Taa | 15 | 15 | All | 0.000003 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp1 | 113 | E113del1 | gAa | g-a | 4 | 7 | All | 0.000001 |
ORF1ab/nsp1 | 113 | E113del1 | Gaa | -aa | 2 | 7 | All | 0 |
ORF1ab/nsp1 | 113 | E113del1 | gAA | g-N | 1 | 7 | All | 0 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaT | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp1 | 113 | E113X | Gaa | Taa | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 5 | 5 | B.1.160.15 | 0.024752 |
ORF1ab/nsp1 | 113 | E113X | Gaa | Taa | 4 | 4 | 0.222222 | |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 4 | 4 | B.1.497 | 0.001259 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | B.1.619.1 | 0.001924 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp1 | 113 | E113del1 | gAa | g-a | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp1 | 113 | E113del1 | gAA | g-N | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp1 | 113 | E113del1 | gAa | g-a | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 113 | E113X | Gaa | Taa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 113 | E113X | Gaa | Taa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp1 | 113 | E113M | GAA | ATG | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 113 | E113Q | Gaa | Caa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 113 | E113Q | Gaa | Caa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 113 | E113del1 | Gaa | -aa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 113 | E113K | GaA | AaG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 113 | E113X | Gaa | Taa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.1.16 | 0.055556 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 113 | E113del1 | Gaa | -aa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp1 | 113 | E113M | GAA | ATG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 113 | E113X | Gaa | Taa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 113 | E113Q | Gaa | Caa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp1 | 113 | E113Q | Gaa | Caa | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 113 | E113del1 | gAa | g-a | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 113 | E113D | gaA | gaC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | B.1.635 | 0.017544 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp1 | 113 | E113del | GAA | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 113 | E113G | gAa | gGa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 113 | E113V | gAa | gTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 113 | E113E | gaA | gaG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 113 | E113A | gAa | gCa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 113 | E113K | Gaa | Aaa | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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