CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 113

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1113E113EE113EsyngaAgaG4314311602-604
ORF1ab/nsp1113E113KE113KnonsynGaaAaa1991980.994975602-604
ORF1ab/nsp1113E113KE113KnonsynGaAAaG19910.00502513602-604
ORF1ab/nsp1113E113GE113GnonsyngAagGa1621621602-604
ORF1ab/nsp1113E113DE113DnonsyngaAgaC63350.555556602-604
ORF1ab/nsp1113E113DE113DnonsyngaAgaT63280.444444602-604
ORF1ab/nsp1113E113delE113deldelGAA---48481602-604
ORF1ab/nsp1113E113AE113AnonsyngAagCa42421602-604
ORF1ab/nsp1113E113QE113QnonsynGaaCaa29291602-604
ORF1ab/nsp1113E113XE113XnonsynGaaTaa15151602-604
ORF1ab/nsp1113E113VE113VnonsyngAagTa10101602-604
ORF1ab/nsp1113E113del1E113del1delgAag-a740.571429602-604
ORF1ab/nsp1113E113del1E113del1delGaa-aa720.285714602-604
ORF1ab/nsp1113E113del1E113del1delgAAg-N710.142857602-604
ORF1ab/nsp1113E113ME113MnonsynGAAATG111602-604

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1113E113EgaAgaG431431All0.000082
ORF1ab/nsp1113E113KGaaAaa198199All0.000038
ORF1ab/nsp1113E113KGaAAaG1199All0
ORF1ab/nsp1113E113GgAagGa162162All0.000031
ORF1ab/nsp1113E113EgaAgaG142142B.1.1.4130.97931
ORF1ab/nsp1113E113GgAagGa8484B.1.1.70.000075
ORF1ab/nsp1113E113DgaAgaC3563All0.000007
ORF1ab/nsp1113E113DgaAgaT2863All0.000005
ORF1ab/nsp1113E113delGAA---4848All0.000009
ORF1ab/nsp1113E113KGaaAaa4747AY.40.000073
ORF1ab/nsp1113E113AgAagCa4242All0.000008
ORF1ab/nsp1113E113EgaAgaG3535AY.99.20.003226
ORF1ab/nsp1113E113QGaaCaa2929All0.000006
ORF1ab/nsp1113E113EgaAgaG2929AY.1190.001024
ORF1ab/nsp1113E113EgaAgaG2626B.1.1.4511
ORF1ab/nsp1113E113QGaaCaa2525AY.430.000111
ORF1ab/nsp1113E113EgaAgaG2525B.1.5260.000588
ORF1ab/nsp1113E113KGaaAaa2222AY.430.000097
ORF1ab/nsp1113E113EgaAgaG2121AY.1210.002842
ORF1ab/nsp1113E113EgaAgaG1919AY.40.00003
ORF1ab/nsp1113E113EgaAgaG1919B.1.10.000345
ORF1ab/nsp1113E113DgaAgaC1819B.1.1.70.000016
ORF1ab/nsp1113E113DgaAgaT119B.1.1.70.000001
ORF1ab/nsp1113E113KGaaAaa1818B.1.617.20.000068
ORF1ab/nsp1113E113DgaAgaT1717B.1.5870.032258
ORF1ab/nsp1113E113EgaAgaG1616B.1.1.70.000014
ORF1ab/nsp1113E113EgaAgaG1616B.1.617.20.00006
ORF1ab/nsp1113E113XGaaTaa1515All0.000003
ORF1ab/nsp1113E113KGaaAaa1515B.1.1.70.000013
ORF1ab/nsp1113E113GgAagGa1212AY.1020.000318
ORF1ab/nsp1113E113AgAagCa1111B.1.1.70.00001
ORF1ab/nsp1113E113KGaaAaa1111B.1.4290.000259
ORF1ab/nsp1113E113VgAagTa1010All0.000002
ORF1ab/nsp1113E113GgAagGa1010B.1.617.20.000038
ORF1ab/nsp1113E113EgaAgaG1010R.10.0009
ORF1ab/nsp1113E113EgaAgaG99AY.9.20.000331
ORF1ab/nsp1113E113del1gAag-a47All0.000001
ORF1ab/nsp1113E113del1Gaa-aa27All0
ORF1ab/nsp1113E113del1gAAg-N17All0
ORF1ab/nsp1113E113KGaaAaa77B.10.000064
ORF1ab/nsp1113E113EgaAgaG77B.1.20.000062
ORF1ab/nsp1113E113EgaAgaG77P.10.00011
ORF1ab/nsp1113E113GgAagGa66AY.30.00006
ORF1ab/nsp1113E113DgaAgaT66AY.40.000009
ORF1ab/nsp1113E113GgAagGa66AY.40.000009
ORF1ab/nsp1113E113KGaaAaa66AY.440.000037
ORF1ab/nsp1113E113GgAagGa55AY.39.10.000198
ORF1ab/nsp1113E113XGaaTaa55B.10.000046
ORF1ab/nsp1113E113EgaAgaG55B.10.000046
ORF1ab/nsp1113E113delGAA---55B.1.1.70.000004
ORF1ab/nsp1113E113AgAagCa55B.1.160.150.024752
ORF1ab/nsp1113E113XGaaTaa440.222222
ORF1ab/nsp1113E113KGaaAaa44AY.200.000155
ORF1ab/nsp1113E113KGaaAaa44AY.290.000063
ORF1ab/nsp1113E113AgAagCa44AY.40.000006
ORF1ab/nsp1113E113delGAA---44AY.40.000006
ORF1ab/nsp1113E113GgAagGa44AY.99.20.000369
ORF1ab/nsp1113E113delGAA---44B.1.1.330.001684
ORF1ab/nsp1113E113delGAA---44B.1.1.3480.003185
ORF1ab/nsp1113E113EgaAgaG44B.1.1770.000053
ORF1ab/nsp1113E113AgAagCa44B.1.4970.001259
ORF1ab/nsp1113E113KGaaAaa44D.20.0003
ORF1ab/nsp1113E113KGaaAaa33AY.1000.000138
ORF1ab/nsp1113E113KGaaAaa33AY.1030.000019
ORF1ab/nsp1113E113GgAagGa33AY.1190.000106
ORF1ab/nsp1113E113KGaaAaa33AY.250.000018
ORF1ab/nsp1113E113EgaAgaG33AY.250.000018
ORF1ab/nsp1113E113EgaAgaG33AY.290.000047
ORF1ab/nsp1113E113KGaaAaa33AY.30.00003
ORF1ab/nsp1113E113KGaaAaa33AY.330.0002
ORF1ab/nsp1113E113KGaaAaa33AY.390.000074
ORF1ab/nsp1113E113GgAagGa33AY.430.000013
ORF1ab/nsp1113E113DgaAgaC33AY.430.000013
ORF1ab/nsp1113E113KGaaAaa33B.1.2430.000209
ORF1ab/nsp1113E113DgaAgaC33B.1.5250.000339
ORF1ab/nsp1113E113KGaaAaa33B.1.619.10.001924
ORF1ab/nsp1113E113KGaaAaa33P.10.000047
ORF1ab/nsp1113E113KGaaAaa22AY.1020.000053
ORF1ab/nsp1113E113del1gAag-a22AY.1030.000012
ORF1ab/nsp1113E113GgAagGa22AY.200.000078
ORF1ab/nsp1113E113delGAA---22AY.250.000012
ORF1ab/nsp1113E113AgAagCa22AY.30.00002
ORF1ab/nsp1113E113GgAagGa22AY.390.000049
ORF1ab/nsp1113E113KGaaAaa22AY.4.2.10.000298
ORF1ab/nsp1113E113delGAA---22AY.430.000009
ORF1ab/nsp1113E113EgaAgaG22AY.440.000012
ORF1ab/nsp1113E113VgAagTa22AY.440.000012
ORF1ab/nsp1113E113GgAagGa22AY.440.000012
ORF1ab/nsp1113E113EgaAgaG22AY.46.60.000144
ORF1ab/nsp1113E113GgAagGa22AY.5.40.000553
ORF1ab/nsp1113E113del1gAAg-N12B.10.000009
ORF1ab/nsp1113E113del1gAag-a12B.10.000009
ORF1ab/nsp1113E113DgaAgaC22B.1.10.000036
ORF1ab/nsp1113E113VgAagTa22B.1.1.70.000002
ORF1ab/nsp1113E113XGaaTaa22B.1.1.70.000002
ORF1ab/nsp1113E113XGaaTaa22B.1.1770.000026
ORF1ab/nsp1113E113GgAagGa22B.1.177.100.001756
ORF1ab/nsp1113E113GgAagGa22B.1.20.000018
ORF1ab/nsp1113E113delGAA---22B.1.20.000018
ORF1ab/nsp1113E113EgaAgaG22B.1.2390.002442
ORF1ab/nsp1113E113AgAagCa22B.1.3490.00143
ORF1ab/nsp1113E113EgaAgaG22B.1.4290.000047
ORF1ab/nsp1113E113EgaAgaG22B.1.5250.000226
ORF1ab/nsp1113E113EgaAgaG22B.1.6210.000177
ORF1ab/nsp1113E113EgaAgaG22C.360.001821
ORF1ab/nsp1113E113delGAA---22N.40.008511
ORF1ab/nsp1113E113delGAA---22N.60.014184
ORF1ab/nsp1113E113delGAA---22P.20.000373
ORF1ab/nsp1113E113GgAagGa110.055556
ORF1ab/nsp1113E113AgAagCa11A.280.002646
ORF1ab/nsp1113E113MGAAATG11All0
ORF1ab/nsp1113E113QGaaCaa11AY.1000.000046
ORF1ab/nsp1113E113DgaAgaT11AY.1020.000027
ORF1ab/nsp1113E113DgaAgaC11AY.1030.000006
ORF1ab/nsp1113E113VgAagTa11AY.1030.000006
ORF1ab/nsp1113E113GgAagGa11AY.1110.000183
ORF1ab/nsp1113E113KGaaAaa11AY.1130.000142
ORF1ab/nsp1113E113delGAA---11AY.1160.000287
ORF1ab/nsp1113E113KGaaAaa11AY.1170.000085
ORF1ab/nsp1113E113AgAagCa11AY.1180.000063
ORF1ab/nsp1113E113AgAagCa11AY.1190.000035
ORF1ab/nsp1113E113delGAA---11AY.120.000316
ORF1ab/nsp1113E113DgaAgaT11AY.1200.000037
ORF1ab/nsp1113E113KGaaAaa11AY.1200.000037
ORF1ab/nsp1113E113GgAagGa11AY.1200.000037
ORF1ab/nsp1113E113KGaaAaa11AY.120.20.001285
ORF1ab/nsp1113E113KGaaAaa11AY.130.000161
ORF1ab/nsp1113E113GgAagGa11AY.160.00038
ORF1ab/nsp1113E113EgaAgaG11AY.230.00007
ORF1ab/nsp1113E113QGaaCaa11AY.230.00007
ORF1ab/nsp1113E113KGaaAaa11AY.260.000028
ORF1ab/nsp1113E113EgaAgaG11AY.260.000028
ORF1ab/nsp1113E113EgaAgaG11AY.270.000065
ORF1ab/nsp1113E113KGaaAaa11AY.270.000065
ORF1ab/nsp1113E113GgAagGa11AY.290.000016
ORF1ab/nsp1113E113AgAagCa11AY.290.000016
ORF1ab/nsp1113E113DgaAgaC11AY.30.00001
ORF1ab/nsp1113E113VgAagTa11AY.350.000233
ORF1ab/nsp1113E113delGAA---11AY.380.000499
ORF1ab/nsp1113E113KGaaAaa11AY.380.000499
ORF1ab/nsp1113E113EgaAgaG11AY.390.000025
ORF1ab/nsp1113E113EgaAgaG11AY.4.20.000022
ORF1ab/nsp1113E113KGaaAaa11AY.4.20.000022
ORF1ab/nsp1113E113delGAA---11AY.4.50.000107
ORF1ab/nsp1113E113GgAagGa11AY.420.00004
ORF1ab/nsp1113E113del1Gaa-aa11AY.430.000004
ORF1ab/nsp1113E113EgaAgaG11AY.430.000004
ORF1ab/nsp1113E113AgAagCa11AY.440.000006
ORF1ab/nsp1113E113GgAagGa11AY.460.000104
ORF1ab/nsp1113E113EgaAgaG11AY.46.20.000635
ORF1ab/nsp1113E113DgaAgaT11AY.46.60.000072
ORF1ab/nsp1113E113DgaAgaC11AY.470.000031
ORF1ab/nsp1113E113KGaaAaa11AY.520.000814
ORF1ab/nsp1113E113AgAagCa11AY.540.000095
ORF1ab/nsp1113E113VgAagTa11AY.60.000041
ORF1ab/nsp1113E113KGaaAaa11AY.610.000105
ORF1ab/nsp1113E113delGAA---11AY.650.000533
ORF1ab/nsp1113E113KGaAAaG11AY.670.000464
ORF1ab/nsp1113E113XGaaTaa11AY.690.000187
ORF1ab/nsp1113E113KGaaAaa11AY.70.000196
ORF1ab/nsp1113E113DgaAgaC11AY.870.000833
ORF1ab/nsp1113E113AgAagCa11AY.90.000068
ORF1ab/nsp1113E113delGAA---11AY.9.10.000084
ORF1ab/nsp1113E113DgaAgaC11AY.9.20.000037
ORF1ab/nsp1113E113EgaAgaG11AY.900.000684
ORF1ab/nsp1113E113DgaAgaT11AY.920.000287
ORF1ab/nsp1113E113delGAA---11AY.950.000761
ORF1ab/nsp1113E113KGaaAaa11AY.99.20.000092
ORF1ab/nsp1113E113VgAagTa11B0.000128
ORF1ab/nsp1113E113EgaAgaG11B0.000128
ORF1ab/nsp1113E113DgaAgaC11B.10.000009
ORF1ab/nsp1113E113delGAA---11B.10.000009
ORF1ab/nsp1113E113GgAagGa11B.10.000009
ORF1ab/nsp1113E113KGaaAaa11B.1.10.000018
ORF1ab/nsp1113E113GgAagGa11B.1.10.000018
ORF1ab/nsp1113E113EgaAgaG11B.1.1.160.055556
ORF1ab/nsp1113E113EgaAgaG11B.1.1.1740.003378
ORF1ab/nsp1113E113AgAagCa11B.1.1.1940.00495
ORF1ab/nsp1113E113EgaAgaG11B.1.1.1980.001468
ORF1ab/nsp1113E113AgAagCa11B.1.1.2220.000204
ORF1ab/nsp1113E113EgaAgaG11B.1.1.3160.000925
ORF1ab/nsp1113E113EgaAgaG11B.1.1.3260.001761
ORF1ab/nsp1113E113KGaaAaa11B.1.1.4200.001006
ORF1ab/nsp1113E113EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp1113E113GgAagGa11B.1.1.5190.00004
ORF1ab/nsp1113E113KGaaAaa11B.1.1.540.003021
ORF1ab/nsp1113E113EgaAgaG11B.1.1.990.02381
ORF1ab/nsp1113E113KGaaAaa11B.1.1600.000031
ORF1ab/nsp1113E113DgaAgaC11B.1.160.160.000929
ORF1ab/nsp1113E113GgAagGa11B.1.1770.000013
ORF1ab/nsp1113E113KGaaAaa11B.1.1770.000013
ORF1ab/nsp1113E113delGAA---11B.1.1770.000013
ORF1ab/nsp1113E113KGaaAaa11B.1.177.210.000076
ORF1ab/nsp1113E113delGAA---11B.1.177.40.000211
ORF1ab/nsp1113E113GgAagGa11B.1.177.730.000566
ORF1ab/nsp1113E113AgAagCa11B.1.177.840.006667
ORF1ab/nsp1113E113delGAA---11B.1.1790.003759
ORF1ab/nsp1113E113VgAagTa11B.1.20.000009
ORF1ab/nsp1113E113KGaaAaa11B.1.20.000009
ORF1ab/nsp1113E113del1Gaa-aa11B.1.20.000009
ORF1ab/nsp1113E113delGAA---11B.1.2110.025
ORF1ab/nsp1113E113AgAagCa11B.1.2210.000071
ORF1ab/nsp1113E113GgAagGa11B.1.2400.000216
ORF1ab/nsp1113E113MGAAATG11B.1.2580.000067
ORF1ab/nsp1113E113GgAagGa11B.1.258.170.000104
ORF1ab/nsp1113E113EgaAgaG11B.1.2600.003344
ORF1ab/nsp1113E113DgaAgaC11B.1.3110.000275
ORF1ab/nsp1113E113KGaaAaa11B.1.3380.008621
ORF1ab/nsp1113E113KGaaAaa11B.1.3510.00003
ORF1ab/nsp1113E113delGAA---11B.1.3510.00003
ORF1ab/nsp1113E113XGaaTaa11B.1.351.20.000303
ORF1ab/nsp1113E113delGAA---11B.1.360.000146
ORF1ab/nsp1113E113EgaAgaG11B.1.360.000146
ORF1ab/nsp1113E113GgAagGa11B.1.360.000146
ORF1ab/nsp1113E113KGaaAaa11B.1.36.210.00216
ORF1ab/nsp1113E113KGaaAaa11B.1.4270.00005
ORF1ab/nsp1113E113delGAA---11B.1.4270.00005
ORF1ab/nsp1113E113QGaaCaa11B.1.4290.000024
ORF1ab/nsp1113E113delGAA---11B.1.4290.000024
ORF1ab/nsp1113E113KGaaAaa11B.1.4390.005917
ORF1ab/nsp1113E113KGaaAaa11B.1.466.20.000391
ORF1ab/nsp1113E113GgAagGa11B.1.5640.000426
ORF1ab/nsp1113E113QGaaCaa11B.1.575.10.002439
ORF1ab/nsp1113E113KGaaAaa11B.1.5960.000087
ORF1ab/nsp1113E113del1gAag-a11B.1.5960.000087
ORF1ab/nsp1113E113EgaAgaG11B.1.5960.000087
ORF1ab/nsp1113E113delGAA---11B.1.617.20.000004
ORF1ab/nsp1113E113DgaAgaC11B.1.617.20.000004
ORF1ab/nsp1113E113EgaAgaG11B.1.621.10.000506
ORF1ab/nsp1113E113AgAagCa11B.1.6350.017544
ORF1ab/nsp1113E113KGaaAaa11B.1.6370.000073
ORF1ab/nsp1113E113AgAagCa11B.1.930.000934
ORF1ab/nsp1113E113delGAA---11C.170.055556
ORF1ab/nsp1113E113delGAA---11C.350.000774
ORF1ab/nsp1113E113GgAagGa11P.10.000016
ORF1ab/nsp1113E113VgAagTa11P.1.120.000484
ORF1ab/nsp1113E113EgaAgaG11P.1.140.000048
ORF1ab/nsp1113E113AgAagCa11P.1.140.000048
ORF1ab/nsp1113E113KGaaAaa11R.10.00009