CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 111

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1111V111VV111VsyngtGgtT299516720.558264596-598
ORF1ab/nsp1111V111VV111VsyngtGgtA299513180.440067596-598
ORF1ab/nsp1111V111VV111VsyngtGgtC299550.00166945596-598
ORF1ab/nsp1111V111MV111MnonsynGtgAtg8948941596-598
ORF1ab/nsp1111V111AV111AnonsyngTggCg6256251596-598
ORF1ab/nsp1111V111LV111LnonsynGtgTtg3233110.962848596-598
ORF1ab/nsp1111V111LV111LnonsynGtgCtg32390.0278638596-598
ORF1ab/nsp1111V111LV111LnonsynGtGCtA32330.00928793596-598
ORF1ab/nsp1111V111EV111EnonsyngTggAg1111111596-598
ORF1ab/nsp1111V111delV111deldelGTG---55551596-598
ORF1ab/nsp1111V111GV111GnonsyngTggGg991596-598
ORF1ab/nsp1111V111del1V111del1delgtGgt-630.5596-598
ORF1ab/nsp1111V111del1V111del1delGtg-tg620.333333596-598
ORF1ab/nsp1111V111del1V111del1delgTgg-g610.166667596-598
ORF1ab/nsp1111V111WV111WnonsynGTgTGg111596-598
ORF1ab/nsp1111V111FV111FnonsynGtGTtT111596-598
ORF1ab/nsp1111V111XV111XnonsynGTgTAg111596-598
ORF1ab/nsp1111V111YV111YnonsynGTGTAT111596-598
ORF1ab/nsp1111V111KV111KnonsynGTgAAg111596-598

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1111V111VgtGgtT16722995All0.00032
ORF1ab/nsp1111V111VgtGgtA13182995All0.000252
ORF1ab/nsp1111V111VgtGgtC52995All0.000001
ORF1ab/nsp1111V111MGtgAtg894894All0.000171
ORF1ab/nsp1111V111VgtGgtA867868P.1.140.041444
ORF1ab/nsp1111V111VgtGgtT1868P.1.140.000048
ORF1ab/nsp1111V111AgTggCg625625All0.00012
ORF1ab/nsp1111V111AgTggCg502502B.1.1.70.000449
ORF1ab/nsp1111V111VgtGgtT335396B.1.1.70.0003
ORF1ab/nsp1111V111VgtGgtA61396B.1.1.70.000055
ORF1ab/nsp1111V111LGtgTtg311323All0.000059
ORF1ab/nsp1111V111LGtgCtg9323All0.000002
ORF1ab/nsp1111V111LGtGCtA3323All0.000001
ORF1ab/nsp1111V111VgtGgtT297297AY.470.009238
ORF1ab/nsp1111V111MGtgAtg246246B.1.617.20.000926
ORF1ab/nsp1111V111MGtgAtg227227B.1.1.70.000203
ORF1ab/nsp1111V111VgtGgtT153166B.1.617.20.000576
ORF1ab/nsp1111V111VgtGgtA13166B.1.617.20.000049
ORF1ab/nsp1111V111VgtGgtT135136B.1.20.001189
ORF1ab/nsp1111V111VgtGgtA1136B.1.20.000009
ORF1ab/nsp1111V111VgtGgtA120126AY.50.002478
ORF1ab/nsp1111V111VgtGgtT6126AY.50.000124
ORF1ab/nsp1111V111VgtGgtT81121AY.40.000126
ORF1ab/nsp1111V111VgtGgtA40121AY.40.000062
ORF1ab/nsp1111V111EgTggAg111111All0.000021
ORF1ab/nsp1111V111VgtGgtT7373AY.980.005767
ORF1ab/nsp1111V111VgtGgtA3665AY.1030.000224
ORF1ab/nsp1111V111VgtGgtT2965AY.1030.00018
ORF1ab/nsp1111V111VgtGgtT5860B.10.000531
ORF1ab/nsp1111V111VgtGgtA260B.10.000018
ORF1ab/nsp1111V111delGTG---5555All0.000011
ORF1ab/nsp1111V111EgTggAg5555B.1.1.70.000049
ORF1ab/nsp1111V111MGtgAtg5454AY.390.001334
ORF1ab/nsp1111V111MGtgAtg4747AY.1020.001246
ORF1ab/nsp1111V111LGtgTtg4041B.1.1.70.000036
ORF1ab/nsp1111V111LGtgCtg141B.1.1.70.000001
ORF1ab/nsp1111V111MGtgAtg4040AD.20.008758
ORF1ab/nsp1111V111VgtGgtT3838B.1.2430.002644
ORF1ab/nsp1111V111LGtgTtg3737B.1.1.1690.672727
ORF1ab/nsp1111V111MGtgAtg3333AY.430.000146
ORF1ab/nsp1111V111VgtGgtT2230AY.430.000097
ORF1ab/nsp1111V111VgtGgtA730AY.430.000031
ORF1ab/nsp1111V111VgtGgtC130AY.430.000004
ORF1ab/nsp1111V111MGtgAtg2828AY.250.000168
ORF1ab/nsp1111V111VgtGgtT1827AY.1020.000477
ORF1ab/nsp1111V111VgtGgtA927AY.1020.000239
ORF1ab/nsp1111V111VgtGgtT2626C.370.003018
ORF1ab/nsp1111V111VgtGgtT2225AY.250.000132
ORF1ab/nsp1111V111VgtGgtA325AY.250.000018
ORF1ab/nsp1111V111VgtGgtT1725AY.30.000169
ORF1ab/nsp1111V111VgtGgtA825AY.30.00008
ORF1ab/nsp1111V111VgtGgtT2324AY.98.10.001114
ORF1ab/nsp1111V111VgtGgtC124AY.98.10.000048
ORF1ab/nsp1111V111AgTggCg2424B.1.177.240.031088
ORF1ab/nsp1111V111AgTggCg2424Q.80.003958
ORF1ab/nsp1111V111VgtGgtT1223AY.440.000073
ORF1ab/nsp1111V111VgtGgtA923AY.440.000055
ORF1ab/nsp1111V111VgtGgtC223AY.440.000012
ORF1ab/nsp1111V111MGtgAtg2020AY.40.000031
ORF1ab/nsp1111V111VgtGgtA1920AY.60.000781
ORF1ab/nsp1111V111VgtGgtT120AY.60.000041
ORF1ab/nsp1111V111VgtGgtT1919AY.350.004428
ORF1ab/nsp1111V111LGtgTtg1819B.1.1770.000237
ORF1ab/nsp1111V111LGtgCtg119B.1.1770.000013
ORF1ab/nsp1111V111VgtGgtA1919B.1.177.90.0253
ORF1ab/nsp1111V111VgtGgtT1818AY.1160.005162
ORF1ab/nsp1111V111LGtgTtg1418AY.40.000022
ORF1ab/nsp1111V111LGtGCtA318AY.40.000005
ORF1ab/nsp1111V111LGtgCtg118AY.40.000002
ORF1ab/nsp1111V111MGtgAtg1818B.1.1600.000561
ORF1ab/nsp1111V111MGtgAtg1818B.1.5260.000423
ORF1ab/nsp1111V111LGtgTtg1617AY.30.000159
ORF1ab/nsp1111V111LGtgCtg117AY.30.00001
ORF1ab/nsp1111V111VgtGgtT1017P.10.000158
ORF1ab/nsp1111V111VgtGgtA717P.10.00011
ORF1ab/nsp1111V111LGtgTtg1616AY.430.000071
ORF1ab/nsp1111V111VgtGgtT1616B.1.1.2220.003264
ORF1ab/nsp1111V111LGtgTtg1414B.1.617.20.000053
ORF1ab/nsp1111V111MGtgAtg1313AY.1030.000081
ORF1ab/nsp1111V111LGtgTtg1313AY.1030.000081
ORF1ab/nsp1111V111VgtGgtT1113AY.1200.000409
ORF1ab/nsp1111V111VgtGgtA213AY.1200.000074
ORF1ab/nsp1111V111VgtGgtA713B.1.10.000127
ORF1ab/nsp1111V111VgtGgtT613B.1.10.000109
ORF1ab/nsp1111V111MGtgAtg1313B.1.20.000114
ORF1ab/nsp1111V111LGtgTtg1313P.10.000205
ORF1ab/nsp1111V111LGtgTtg1112B.10.000101
ORF1ab/nsp1111V111LGtgCtg112B.10.000009
ORF1ab/nsp1111V111VgtGgtT1011AY.200.000389
ORF1ab/nsp1111V111VgtGgtA111AY.200.000039
ORF1ab/nsp1111V111LGtgTtg1111AY.440.000067
ORF1ab/nsp1111V111VgtGgtT1111AY.840.004812
ORF1ab/nsp1111V111VgtGgtT1010B.1.1770.000132
ORF1ab/nsp1111V111MGtgAtg1010B.1.3510.000297
ORF1ab/nsp1111V111MGtgAtg1010B.1.6370.000731
ORF1ab/nsp1111V111GgTggGg99All0.000002
ORF1ab/nsp1111V111LGtgTtg99AY.250.000054
ORF1ab/nsp1111V111VgtGgtT99B0.00115
ORF1ab/nsp1111V111MGtgAtg99B.1.4970.002833
ORF1ab/nsp1111V111VgtGgtT88AY.1000.000368
ORF1ab/nsp1111V111VgtGgtT88AY.330.000534
ORF1ab/nsp1111V111VgtGgtA58B.1.1.5190.000199
ORF1ab/nsp1111V111VgtGgtT38B.1.1.5190.000119
ORF1ab/nsp1111V111LGtgTtg88B.1.177.580.010652
ORF1ab/nsp1111V111LGtgTtg88D.20.0006
ORF1ab/nsp1111V111MGtgAtg77AY.1200.00026
ORF1ab/nsp1111V111AgTggCg77AY.200.000272
ORF1ab/nsp1111V111VgtGgtT57AY.260.000142
ORF1ab/nsp1111V111VgtGgtA27AY.260.000057
ORF1ab/nsp1111V111LGtgTtg77AY.290.00011
ORF1ab/nsp1111V111EgTggAg77B.1.1.5190.000278
ORF1ab/nsp1111V111VgtGgtT67B.1.2320.003224
ORF1ab/nsp1111V111VgtGgtA17B.1.2320.000537
ORF1ab/nsp1111V111VgtGgtT57B.1.5960.000436
ORF1ab/nsp1111V111VgtGgtA27B.1.5960.000174
ORF1ab/nsp1111V111AgTggCg77B.1.617.20.000026
ORF1ab/nsp1111V111VgtGgtT77P.1.70.002235
ORF1ab/nsp1111V111del1gtGgt-36All0.000001
ORF1ab/nsp1111V111del1Gtg-tg26All0
ORF1ab/nsp1111V111del1gTgg-g16All0
ORF1ab/nsp1111V111LGtgTtg66AY.1020.000159
ORF1ab/nsp1111V111VgtGgtT56AY.1180.000313
ORF1ab/nsp1111V111VgtGgtA16AY.1180.000063
ORF1ab/nsp1111V111EgTggAg66AY.250.000036
ORF1ab/nsp1111V111VgtGgtT56AY.610.000524
ORF1ab/nsp1111V111VgtGgtA16AY.610.000105
ORF1ab/nsp1111V111AgTggCg66B.1.1770.000079
ORF1ab/nsp1111V111AgTggCg66B.1.177.690.008902
ORF1ab/nsp1111V111VgtGgtA36B.1.360.000438
ORF1ab/nsp1111V111VgtGgtT36B.1.360.000438
ORF1ab/nsp1111V111VgtGgtT46B.1.4290.000094
ORF1ab/nsp1111V111VgtGgtA26B.1.4290.000047
ORF1ab/nsp1111V111VgtGgtA66Q.30.00087
ORF1ab/nsp1111V111VgtGgtT45AY.230.000279
ORF1ab/nsp1111V111VgtGgtA15AY.230.00007
ORF1ab/nsp1111V111MGtgAtg55AY.30.00005
ORF1ab/nsp1111V111VgtGgtA35AY.390.000074
ORF1ab/nsp1111V111VgtGgtT25AY.390.000049
ORF1ab/nsp1111V111EgTggAg55AY.40.000008
ORF1ab/nsp1111V111AgTggCg55AY.40.000008
ORF1ab/nsp1111V111EgTggAg55AY.430.000022
ORF1ab/nsp1111V111VgtGgtT55AY.450.000608
ORF1ab/nsp1111V111VgtGgtT55B.1.1.540.015106
ORF1ab/nsp1111V111delGTG---55B.1.1.70.000004
ORF1ab/nsp1111V111EgTggAg55B.1.1600.000156
ORF1ab/nsp1111V111VgtGgtA45B.1.2210.000284
ORF1ab/nsp1111V111VgtGgtT15B.1.2210.000071
ORF1ab/nsp1111V111VgtGgtT55P.1.150.001162
ORF1ab/nsp1111V111AgTggCg55Q.10.000632
ORF1ab/nsp1111V111VgtGgtA240.111111
ORF1ab/nsp1111V111VgtGgtT240.111111
ORF1ab/nsp1111V111MGtgAtg44AY.1060.00134
ORF1ab/nsp1111V111MGtgAtg44AY.230.000279
ORF1ab/nsp1111V111VgtGgtA24AY.290.000032
ORF1ab/nsp1111V111VgtGgtT24AY.290.000032
ORF1ab/nsp1111V111VgtGgtA34AY.3.10.000256
ORF1ab/nsp1111V111VgtGgtT14AY.3.10.000085
ORF1ab/nsp1111V111delGTG---44AY.40.000006
ORF1ab/nsp1111V111VgtGgtA34AY.420.000121
ORF1ab/nsp1111V111VgtGgtT14AY.420.00004
ORF1ab/nsp1111V111MGtgAtg44AY.440.000024
ORF1ab/nsp1111V111VgtGgtT44AY.480.00186
ORF1ab/nsp1111V111MGtgAtg44AY.50.000083
ORF1ab/nsp1111V111MGtgAtg44AY.5.40.001107
ORF1ab/nsp1111V111LGtgTtg44AY.9.10.000335
ORF1ab/nsp1111V111MGtgAtg44B.10.000037
ORF1ab/nsp1111V111VgtGgtT44B.1.1.1590.018692
ORF1ab/nsp1111V111VgtGgtA34B.1.1.2140.000166
ORF1ab/nsp1111V111VgtGgtT14B.1.1.2140.000055
ORF1ab/nsp1111V111VgtGgtT44B.1.1.280.001245
ORF1ab/nsp1111V111delGTG---44B.1.1.330.001684
ORF1ab/nsp1111V111delGTG---44B.1.1.3480.003185
ORF1ab/nsp1111V111EgTggAg44B.1.177.810.000757
ORF1ab/nsp1111V111LGtgTtg44B.1.20.000035
ORF1ab/nsp1111V111VgtGgtT24B.1.2580.000133
ORF1ab/nsp1111V111VgtGgtA24B.1.2580.000133
ORF1ab/nsp1111V111VgtGgtT24B.1.3510.000059
ORF1ab/nsp1111V111VgtGgtA24B.1.3510.000059
ORF1ab/nsp1111V111LGtgTtg44B.1.360.000584
ORF1ab/nsp1111V111LGtgTtg44B.1.4590.016327
ORF1ab/nsp1111V111VgtGgtT34B.1.5260.000071
ORF1ab/nsp1111V111VgtGgtA14B.1.5260.000024
ORF1ab/nsp1111V111LGtgTtg44B.1.5510.005161
ORF1ab/nsp1111V111VgtGgtA44B.1.617.10.000516
ORF1ab/nsp1111V111EgTggAg44B.1.617.20.000015
ORF1ab/nsp1111V111VgtGgtA44B.1.6370.000292
ORF1ab/nsp1111V111MGtgAtg44P.10.000063
ORF1ab/nsp1111V111AgTggCg33AY.1000.000138
ORF1ab/nsp1111V111VgtGgtT33AY.1110.000549
ORF1ab/nsp1111V111MGtgAtg33AY.1130.000427
ORF1ab/nsp1111V111AgTggCg33AY.1190.000106
ORF1ab/nsp1111V111MGtgAtg33AY.20.001068
ORF1ab/nsp1111V111MGtgAtg33AY.23.10.001252
ORF1ab/nsp1111V111VgtGgtT33AY.4.2.10.000447
ORF1ab/nsp1111V111delGTG---33AY.430.000013
ORF1ab/nsp1111V111EgTggAg33AY.440.000018
ORF1ab/nsp1111V111MGtgAtg33AY.460.000312
ORF1ab/nsp1111V111VgtGgtT23AY.75.10.000361
ORF1ab/nsp1111V111VgtGgtA13AY.75.10.00018
ORF1ab/nsp1111V111VgtGgtA33AY.9.10.000251
ORF1ab/nsp1111V111AgTggCg33B.10.000027
ORF1ab/nsp1111V111LGtgTtg23B.1.10.000036
ORF1ab/nsp1111V111LGtgCtg13B.1.10.000018
ORF1ab/nsp1111V111VgtGgtT33B.1.1.2770.002276
ORF1ab/nsp1111V111VgtGgtT33B.1.1.500.002037
ORF1ab/nsp1111V111MGtgAtg33B.1.1.5190.000119
ORF1ab/nsp1111V111delGTG---33B.1.20.000026
ORF1ab/nsp1111V111VgtGgtT33B.1.2350.007557
ORF1ab/nsp1111V111MGtgAtg33B.1.3090.142857
ORF1ab/nsp1111V111VgtGgtT33B.1.3980.008929
ORF1ab/nsp1111V111VgtGgtA33B.1.4270.000151
ORF1ab/nsp1111V111VgtGgtT33B.1.466.20.001174
ORF1ab/nsp1111V111VgtGgtT33B.1.5820.001472
ORF1ab/nsp1111V111VgtGgtT33C.37.10.007853
ORF1ab/nsp1111V111VgtGgtT33P.1.120.001452
ORF1ab/nsp1111V111AgTggCg33P.1.170.000485
ORF1ab/nsp1111V111EgTggAg33Q.30.000435
ORF1ab/nsp1111V111VgtGgtT22A.2.50.000998
ORF1ab/nsp1111V111LGtgTtg22AY.1000.000092
ORF1ab/nsp1111V111AgTggCg22AY.1030.000012
ORF1ab/nsp1111V111VgtGgtA12AY.1080.001103
ORF1ab/nsp1111V111VgtGgtT12AY.1080.001103
ORF1ab/nsp1111V111AgTggCg22AY.1090.001479
ORF1ab/nsp1111V111VgtGgtT22AY.1190.000071
ORF1ab/nsp1111V111VgtGgtT22AY.140.000176
ORF1ab/nsp1111V111MGtgAtg22AY.16.10.00094
ORF1ab/nsp1111V111delGTG---22AY.250.000012
ORF1ab/nsp1111V111VgtGgtT12AY.270.000065
ORF1ab/nsp1111V111VgtGgtA12AY.270.000065
ORF1ab/nsp1111V111VgtGgtT12AY.360.000148
ORF1ab/nsp1111V111VgtGgtA12AY.360.000148
ORF1ab/nsp1111V111LGtgTtg22AY.4.20.000043
ORF1ab/nsp1111V111AgTggCg22AY.4.20.000043
ORF1ab/nsp1111V111MGtgAtg22AY.470.000062
ORF1ab/nsp1111V111MGtgAtg22AY.570.001312
ORF1ab/nsp1111V111VgtGgtT22AY.670.000929
ORF1ab/nsp1111V111VgtGgtT22AY.690.000373
ORF1ab/nsp1111V111LGtgTtg22AY.70.000392
ORF1ab/nsp1111V111VgtGgtT22AY.730.001331
ORF1ab/nsp1111V111MGtgAtg22AY.920.000575
ORF1ab/nsp1111V111MGtgAtg22AY.980.000158
ORF1ab/nsp1111V111MGtgAtg22B.1.10.000036
ORF1ab/nsp1111V111VgtGgtT22B.1.1.2070.002364
ORF1ab/nsp1111V111VgtGgtA22B.1.1.3060.000877
ORF1ab/nsp1111V111GgTggGg22B.1.1.70.000002
ORF1ab/nsp1111V111LGtgTtg22B.1.1.700.000682
ORF1ab/nsp1111V111AgTggCg22B.1.1470.001512
ORF1ab/nsp1111V111MGtgAtg22B.1.160.280.005848
ORF1ab/nsp1111V111MGtgAtg22B.1.1770.000026
ORF1ab/nsp1111V111delGTG---22B.1.177.40.000422
ORF1ab/nsp1111V111VgtGgtA22B.1.177.70.00033
ORF1ab/nsp1111V111EgTggAg22B.1.20.000018
ORF1ab/nsp1111V111MGtgAtg22B.1.2580.000133
ORF1ab/nsp1111V111VgtGgtA22B.1.351.20.000605
ORF1ab/nsp1111V111MGtgAtg22B.1.360.000292
ORF1ab/nsp1111V111LGtgTtg22B.1.36.290.001035
ORF1ab/nsp1111V111AgTggCg22B.1.4290.000047
ORF1ab/nsp1111V111LGtgTtg22B.1.4290.000047
ORF1ab/nsp1111V111LGtgTtg22B.1.5260.000047
ORF1ab/nsp1111V111LGtgTtg22B.1.5960.000174
ORF1ab/nsp1111V111GgTggGg22B.1.5960.000174
ORF1ab/nsp1111V111MGtgAtg22B.1.617.10.000258
ORF1ab/nsp1111V111GgTggGg22B.1.617.20.000008
ORF1ab/nsp1111V111VgtGgtA12B.1.6210.000089
ORF1ab/nsp1111V111VgtGgtT12B.1.6210.000089
ORF1ab/nsp1111V111VgtGgtT22B.1.6230.001073
ORF1ab/nsp1111V111delGTG---22N.40.008511
ORF1ab/nsp1111V111VgtGgtA12N.40.004255
ORF1ab/nsp1111V111VgtGgtT12N.40.004255
ORF1ab/nsp1111V111delGTG---22N.60.014184
ORF1ab/nsp1111V111LGtgTtg22P.1.140.000096
ORF1ab/nsp1111V111delGTG---22P.20.000373
ORF1ab/nsp1111V111LGtgTtg110.055556
ORF1ab/nsp1111V111delGTG---11A0.000387
ORF1ab/nsp1111V111LGtgTtg11A.30.002096
ORF1ab/nsp1111V111VgtGgtT11AD.20.000219
ORF1ab/nsp1111V111LGtgTtg11AE.80.000489
ORF1ab/nsp1111V111FGtGTtT11All0
ORF1ab/nsp1111V111YGTGTAT11All0
ORF1ab/nsp1111V111XGTgTAg11All0
ORF1ab/nsp1111V111WGTgTGg11All0
ORF1ab/nsp1111V111KGTgAAg11All0
ORF1ab/nsp1111V111VgtGgtT11AY.10.000396
ORF1ab/nsp1111V111AgTggCg11AY.1020.000027
ORF1ab/nsp1111V111EgTggAg11AY.1030.000006
ORF1ab/nsp1111V111VgtGgtT11AY.1040.001984
ORF1ab/nsp1111V111VgtGgtT11AY.1060.000335
ORF1ab/nsp1111V111VgtGgtT11AY.1070.000466
ORF1ab/nsp1111V111VgtGgtT11AY.1090.00074
ORF1ab/nsp1111V111MGtgAtg11AY.110.001339
ORF1ab/nsp1111V111VgtGgtT11AY.1130.000142
ORF1ab/nsp1111V111delGTG---11AY.1160.000287
ORF1ab/nsp1111V111LGtgTtg11AY.1170.000085
ORF1ab/nsp1111V111MGtgAtg11AY.1170.000085
ORF1ab/nsp1111V111LGtgTtg11AY.1180.000063
ORF1ab/nsp1111V111delGTG---11AY.120.000316
ORF1ab/nsp1111V111VgtGgtT11AY.1210.000135
ORF1ab/nsp1111V111EgTggAg11AY.230.00007
ORF1ab/nsp1111V111AgTggCg11AY.260.000028
ORF1ab/nsp1111V111MGtgAtg11AY.270.000065
ORF1ab/nsp1111V111del1Gtg-tg11AY.30.00001
ORF1ab/nsp1111V111AgTggCg11AY.330.000067
ORF1ab/nsp1111V111MGtgAtg11AY.330.000067
ORF1ab/nsp1111V111VgtGgtT11AY.370.000316
ORF1ab/nsp1111V111delGTG---11AY.380.000499
ORF1ab/nsp1111V111EgTggAg11AY.390.000025
ORF1ab/nsp1111V111GgTggGg11AY.390.000025
ORF1ab/nsp1111V111MGtgAtg11AY.39.10.00004
ORF1ab/nsp1111V111VgtGgtT11AY.4.20.000022
ORF1ab/nsp1111V111MGtgAtg11AY.4.40.000409
ORF1ab/nsp1111V111VgtGgtT11AY.4.40.000409
ORF1ab/nsp1111V111delGTG---11AY.4.50.000107
ORF1ab/nsp1111V111MGtgAtg11AY.420.00004
ORF1ab/nsp1111V111AgTggCg11AY.420.00004
ORF1ab/nsp1111V111MGtgAtg11AY.450.000122
ORF1ab/nsp1111V111EgTggAg11AY.450.000122
ORF1ab/nsp1111V111LGtgTtg11AY.450.000122
ORF1ab/nsp1111V111AgTggCg11AY.46.20.000635
ORF1ab/nsp1111V111MGtgAtg11AY.46.50.000198
ORF1ab/nsp1111V111AgTggCg11AY.470.000031
ORF1ab/nsp1111V111EgTggAg11AY.540.000095
ORF1ab/nsp1111V111LGtgTtg11AY.540.000095
ORF1ab/nsp1111V111LGtgTtg11AY.550.000917
ORF1ab/nsp1111V111WGTgTGg11AY.590.00053
ORF1ab/nsp1111V111XGTgTAg11AY.590.00053
ORF1ab/nsp1111V111VgtGgtT11AY.590.00053
ORF1ab/nsp1111V111VgtGgtT11AY.620.000436
ORF1ab/nsp1111V111delGTG---11AY.640.000595
ORF1ab/nsp1111V111VgtGgtT11AY.650.000533
ORF1ab/nsp1111V111delGTG---11AY.650.000533
ORF1ab/nsp1111V111LGtgTtg11AY.680.000274
ORF1ab/nsp1111V111VgtGgtA11AY.680.000274
ORF1ab/nsp1111V111VgtGgtT11AY.700.000209
ORF1ab/nsp1111V111VgtGgtA11AY.740.000116
ORF1ab/nsp1111V111VgtGgtT11AY.750.000056
ORF1ab/nsp1111V111MGtgAtg11AY.750.000056
ORF1ab/nsp1111V111LGtgTtg11AY.750.000056
ORF1ab/nsp1111V111del1gtGgt-11AY.750.000056
ORF1ab/nsp1111V111VgtGgtT11AY.880.000884
ORF1ab/nsp1111V111MGtgAtg11AY.9.10.000084
ORF1ab/nsp1111V111delGTG---11AY.9.10.000084
ORF1ab/nsp1111V111VgtGgtT11AY.9.20.000037
ORF1ab/nsp1111V111VgtGgtT11AY.920.000287
ORF1ab/nsp1111V111delGTG---11AY.950.000761
ORF1ab/nsp1111V111LGtgTtg11AY.970.001701
ORF1ab/nsp1111V111LGtgTtg11AY.980.000079
ORF1ab/nsp1111V111MGtgAtg11AY.98.10.000048
ORF1ab/nsp1111V111VgtGgtT11AY.990.001049
ORF1ab/nsp1111V111LGtgTtg11AY.99.20.000092
ORF1ab/nsp1111V111VgtGgtT11AY.99.20.000092
ORF1ab/nsp1111V111LGtgTtg11AZ.30.00152
ORF1ab/nsp1111V111MGtgAtg11B0.000128
ORF1ab/nsp1111V111delGTG---11B.10.000009
ORF1ab/nsp1111V111EgTggAg11B.10.000009
ORF1ab/nsp1111V111GgTggGg11B.10.000009
ORF1ab/nsp1111V111FGtGTtT11B.1.10.000018
ORF1ab/nsp1111V111MGtgAtg11B.1.1.10.000327
ORF1ab/nsp1111V111LGtgTtg11B.1.1.1760.000439
ORF1ab/nsp1111V111LGtgTtg11B.1.1.2160.00089
ORF1ab/nsp1111V111MGtgAtg11B.1.1.2160.00089
ORF1ab/nsp1111V111VgtGgtA11B.1.1.2310.003096
ORF1ab/nsp1111V111LGtgTtg11B.1.1.250.000569
ORF1ab/nsp1111V111VgtGgtT11B.1.1.2690.001353
ORF1ab/nsp1111V111LGtgTtg11B.1.1.3060.000438
ORF1ab/nsp1111V111VgtGgtT11B.1.1.3180.000302
ORF1ab/nsp1111V111VgtGgtT11B.1.1.330.000421
ORF1ab/nsp1111V111MGtgAtg11B.1.1.3480.000796
ORF1ab/nsp1111V111LGtgTtg11B.1.1.370.000193
ORF1ab/nsp1111V111VgtGgtT11B.1.1.370.000193
ORF1ab/nsp1111V111VgtGgtT11B.1.1.3720.000689
ORF1ab/nsp1111V111VgtGgtA11B.1.1.4080.027778
ORF1ab/nsp1111V111VgtGgtT11B.1.1.4090.002833
ORF1ab/nsp1111V111LGtgTtg11B.1.1.5190.00004
ORF1ab/nsp1111V111YGTGTAT11B.1.1.70.000001
ORF1ab/nsp1111V111VgtGgtT11B.1.1.700.000341
ORF1ab/nsp1111V111VgtGgtT11B.1.1110.001175
ORF1ab/nsp1111V111AgTggCg11B.1.1490.003425
ORF1ab/nsp1111V111VgtGgtT11B.1.160.140.002119
ORF1ab/nsp1111V111LGtgCtg11B.1.160.160.000929
ORF1ab/nsp1111V111LGtgCtg11B.1.160.90.007194
ORF1ab/nsp1111V111VgtGgtT11B.1.1670.007812
ORF1ab/nsp1111V111delGTG---11B.1.1770.000013
ORF1ab/nsp1111V111del1Gtg-tg11B.1.177.210.000076
ORF1ab/nsp1111V111VgtGgtT11B.1.177.210.000076
ORF1ab/nsp1111V111VgtGgtT11B.1.177.520.001757
ORF1ab/nsp1111V111delGTG---11B.1.177.540.000606
ORF1ab/nsp1111V111delGTG---11B.1.177.570.000281
ORF1ab/nsp1111V111VgtGgtA11B.1.177.650.000665
ORF1ab/nsp1111V111EgTggAg11B.1.177.70.000165
ORF1ab/nsp1111V111MGtgAtg11B.1.177.810.000189
ORF1ab/nsp1111V111delGTG---11B.1.1790.003759
ORF1ab/nsp1111V111AgTggCg11B.1.20.000009
ORF1ab/nsp1111V111VgtGgtT11B.1.2060.000816
ORF1ab/nsp1111V111delGTG---11B.1.2110.025
ORF1ab/nsp1111V111VgtGgtA11B.1.214.20.0006
ORF1ab/nsp1111V111EgTggAg11B.1.214.30.007143
ORF1ab/nsp1111V111AgTggCg11B.1.2210.000071
ORF1ab/nsp1111V111EgTggAg11B.1.2320.000537
ORF1ab/nsp1111V111VgtGgtC11B.1.2340.000132
ORF1ab/nsp1111V111MGtgAtg11B.1.2430.00007
ORF1ab/nsp1111V111LGtgTtg11B.1.2580.000067
ORF1ab/nsp1111V111MGtgAtg11B.1.258.170.000104
ORF1ab/nsp1111V111VgtGgtA11B.1.258.50.008772
ORF1ab/nsp1111V111LGtgTtg11B.1.2600.003344
ORF1ab/nsp1111V111VgtGgtT11B.1.2910.019231
ORF1ab/nsp1111V111LGtgTtg11B.1.30.002618
ORF1ab/nsp1111V111delGTG---11B.1.3510.00003
ORF1ab/nsp1111V111AgTggCg11B.1.3510.00003
ORF1ab/nsp1111V111LGtgTtg11B.1.3510.00003
ORF1ab/nsp1111V111delGTG---11B.1.360.000146
ORF1ab/nsp1111V111LGtgTtg11B.1.36.170.000494
ORF1ab/nsp1111V111VgtGgtT11B.1.36.180.00042
ORF1ab/nsp1111V111LGtgTtg11B.1.36.390.002217
ORF1ab/nsp1111V111VgtGgtT11B.1.4130.004255
ORF1ab/nsp1111V111VgtGgtA11B.1.4160.001269
ORF1ab/nsp1111V111delGTG---11B.1.4270.00005
ORF1ab/nsp1111V111AgTggCg11B.1.4270.00005
ORF1ab/nsp1111V111delGTG---11B.1.4290.000024
ORF1ab/nsp1111V111MGtgAtg11B.1.4290.000024
ORF1ab/nsp1111V111VgtGgtA11B.1.4380.006536
ORF1ab/nsp1111V111VgtGgtA11B.1.438.10.000107
ORF1ab/nsp1111V111LGtgTtg11B.1.4520.013699
ORF1ab/nsp1111V111VgtGgtT11B.1.4530.003236
ORF1ab/nsp1111V111LGtgTtg11B.1.4800.002488
ORF1ab/nsp1111V111MGtgAtg11B.1.5030.002488
ORF1ab/nsp1111V111del1gTgg-g11B.1.5090.000866
ORF1ab/nsp1111V111LGtgTtg11B.1.5640.000426
ORF1ab/nsp1111V111MGtgAtg11B.1.5750.000303
ORF1ab/nsp1111V111MGtgAtg11B.1.575.10.002439
ORF1ab/nsp1111V111MGtgAtg11B.1.5770.000687
ORF1ab/nsp1111V111GgTggGg11B.1.5770.000687
ORF1ab/nsp1111V111LGtgTtg11B.1.5820.000491
ORF1ab/nsp1111V111VgtGgtT11B.1.5880.00091
ORF1ab/nsp1111V111del1gtGgt-11B.1.617.10.000129
ORF1ab/nsp1111V111del1gtGgt-11B.1.617.20.000004
ORF1ab/nsp1111V111KGTgAAg11B.1.617.20.000004
ORF1ab/nsp1111V111delGTG---11B.1.617.20.000004
ORF1ab/nsp1111V111EgTggAg11B.1.6210.000089
ORF1ab/nsp1111V111MGtgAtg11B.1.6280.000352
ORF1ab/nsp1111V111AgTggCg11B.1.6370.000073
ORF1ab/nsp1111V111EgTggAg11B.1.830.015385
ORF1ab/nsp1111V111VgtGgtT11B.400.000364
ORF1ab/nsp1111V111delGTG---11C.170.055556
ORF1ab/nsp1111V111VgtGgtT11C.300.001727
ORF1ab/nsp1111V111delGTG---11C.350.000774
ORF1ab/nsp1111V111VgtGgtT11C.360.000911
ORF1ab/nsp1111V111LGtgCtg11C.36.30.000567
ORF1ab/nsp1111V111VgtGgtA11D.20.000075
ORF1ab/nsp1111V111AgTggCg11D.20.000075
ORF1ab/nsp1111V111VgtGgtA11L.30.003546
ORF1ab/nsp1111V111AgTggCg11N.50.001767
ORF1ab/nsp1111V111AgTggCg11P.10.000016
ORF1ab/nsp1111V111EgTggAg11P.10.000016
ORF1ab/nsp1111V111VgtGgtT11P.1.10.000318
ORF1ab/nsp1111V111AgTggCg11P.1.120.000484
ORF1ab/nsp1111V111MGtgAtg11P.1.140.000048
ORF1ab/nsp1111V111VgtGgtT11P.20.000187
ORF1ab/nsp1111V111MGtgAtg11P.20.000187
ORF1ab/nsp1111V111VgtGgtT11Q.10.000126
ORF1ab/nsp1111V111AgTggCg11Q.40.000455
ORF1ab/nsp1111V111MGtgAtg11Q.80.000165