CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 110

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1110H110YH110YnonsynCatTat17109171080.999942593-595
ORF1ab/nsp1110H110YH110YnonsynCaTTaC1710910.0000584488593-595
ORF1ab/nsp1110H110RH110RnonsyncAtcGt8078060.998761593-595
ORF1ab/nsp1110H110RH110RnonsyncATcGC80710.00123916593-595
ORF1ab/nsp1110H110HH110HsyncaTcaC2832831593-595
ORF1ab/nsp1110H110delH110deldelCAT---58581593-595
ORF1ab/nsp1110H110QH110QnonsyncaTcaA54440.814815593-595
ORF1ab/nsp1110H110QH110QnonsyncaTcaG54100.185185593-595
ORF1ab/nsp1110H110LH110LnonsyncAtcTt43431593-595
ORF1ab/nsp1110H110DH110DnonsynCatGat38381593-595
ORF1ab/nsp1110H110NH110NnonsynCatAat24241593-595
ORF1ab/nsp1110H110PH110PnonsyncAtcCt881593-595
ORF1ab/nsp1110H110del1H110del1delCat-at420.5593-595
ORF1ab/nsp1110H110del1H110del1delCaT-aC410.25593-595
ORF1ab/nsp1110H110del1H110del1delCATT-C410.25593-595
ORF1ab/nsp1110H110del2H110del2delcATc--210.5593-595
ORF1ab/nsp1110H110del2H110del2delCAt--t210.5593-595
ORF1ab/nsp1110H110FH110FnonsynCAtTTt111593-595
ORF1ab/nsp1110H110TH110TnonsynCATACG111593-595
ORF1ab/nsp1110H110GH110GnonsynCATGGC111593-595

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1110H110YCatTat1710817109All0.003272
ORF1ab/nsp1110H110YCaTTaC117109All0
ORF1ab/nsp1110H110YCatTat48724872B.1.1.70.004362
ORF1ab/nsp1110H110YCatTat13711372AY.260.038813
ORF1ab/nsp1110H110YCaTTaC11372AY.260.000028
ORF1ab/nsp1110H110YCatTat12941294B.1.4290.030446
ORF1ab/nsp1110H110YCatTat12021202B.1.177.210.091917
ORF1ab/nsp1110H110RcAtcGt806807All0.000154
ORF1ab/nsp1110H110RcATcGC1807All0
ORF1ab/nsp1110H110YCatTat613613AY.40.000954
ORF1ab/nsp1110H110YCatTat556556B.1.617.20.002094
ORF1ab/nsp1110H110YCatTat482482AY.39.10.019094
ORF1ab/nsp1110H110YCatTat455455B.1.466.20.178013
ORF1ab/nsp1110H110YCatTat434434B.1.1770.005715
ORF1ab/nsp1110H110YCatTat411411B.1.177.50.510559
ORF1ab/nsp1110H110RcAtcGt341341B.1.1.2140.018911
ORF1ab/nsp1110H110YCatTat330330AY.30.003282
ORF1ab/nsp1110H110HcaTcaC283283All0.000054
ORF1ab/nsp1110H110YCatTat262262AY.250.001576
ORF1ab/nsp1110H110YCatTat258258P.10.004065
ORF1ab/nsp1110H110RcAtcGt257257AY.40.0004
ORF1ab/nsp1110H110YCatTat255255AY.430.00113
ORF1ab/nsp1110H110YCatTat215215B.1.20.001893
ORF1ab/nsp1110H110YCatTat193193AY.1030.001198
ORF1ab/nsp1110H110YCatTat169169AY.100.08956
ORF1ab/nsp1110H110YCatTat150150B.10.001374
ORF1ab/nsp1110H110YCatTat147147B.1.10.002667
ORF1ab/nsp1110H110YCatTat127127B.1.4210.947761
ORF1ab/nsp1110H110YCatTat126126AY.50.002602
ORF1ab/nsp1110H110YCatTat125125AY.440.000761
ORF1ab/nsp1110H110YCatTat118118B.1.177.870.085881
ORF1ab/nsp1110H110YCatTat107107B.1.214.40.972727
ORF1ab/nsp1110H110YCatTat9999B.1.1600.003088
ORF1ab/nsp1110H110YCatTat9292B.1.1.2220.018768
ORF1ab/nsp1110H110YCatTat8989B.1.5260.002092
ORF1ab/nsp1110H110YCatTat8383AY.730.055223
ORF1ab/nsp1110H110YCatTat7777B.1.3510.002289
ORF1ab/nsp1110H110HcaTcaC7474B.1.1.2180.569231
ORF1ab/nsp1110H110YCatTat6868B.1.4270.003434
ORF1ab/nsp1110H110YCatTat6868B.1.6220.883117
ORF1ab/nsp1110H110YCatTat6565AY.270.004207
ORF1ab/nsp1110H110YCatTat6464AY.300.025326
ORF1ab/nsp1110H110YCatTat6464AY.390.001582
ORF1ab/nsp1110H110YCatTat6262P.1.150.014405
ORF1ab/nsp1110H110delCAT---5858All0.000011
ORF1ab/nsp1110H110YCatTat5656B.1.36.200.949153
ORF1ab/nsp1110H110QcaTcaA4454All0.000008
ORF1ab/nsp1110H110QcaTcaG1054All0.000002
ORF1ab/nsp1110H110YCatTat5454AY.1020.001432
ORF1ab/nsp1110H110YCatTat5454B.1.2210.003836
ORF1ab/nsp1110H110YCatTat5454B.1.6210.00478
ORF1ab/nsp1110H110YCatTat5353B.1.1.5220.913793
ORF1ab/nsp1110H110YCatTat5252AY.290.00082
ORF1ab/nsp1110H110YCatTat5050AD.20.010948
ORF1ab/nsp1110H110YCatTat4747AY.1110.008608
ORF1ab/nsp1110H110YCatTat4646AY.200.001788
ORF1ab/nsp1110H110LcAtcTt4343All0.000008
ORF1ab/nsp1110H110YCatTat4141AY.4.20.000889
ORF1ab/nsp1110H110HcaTcaC4141B.1.1.70.000037
ORF1ab/nsp1110H110YCatTat3939AY.3.10.003325
ORF1ab/nsp1110H110DCatGat3838All0.000007
ORF1ab/nsp1110H110YCatTat3838AY.98.10.00184
ORF1ab/nsp1110H110YCatTat3535AY.1000.00161
ORF1ab/nsp1110H110YCatTat3333B.1.2430.002296
ORF1ab/nsp1110H110YCatTat3030AY.420.001207
ORF1ab/nsp1110H110YCatTat2828P.1.160.010475
ORF1ab/nsp1110H110RcAtcGt2727AY.46.60.00195
ORF1ab/nsp1110H110YCatTat2727B.1.1.5190.001072
ORF1ab/nsp1110H110YCatTat2727B.1.3690.007701
ORF1ab/nsp1110H110HcaTcaC2727B.1.617.20.000102
ORF1ab/nsp1110H110YCatTat2525AY.1190.000883
ORF1ab/nsp1110H110NCatAat2424All0.000005
ORF1ab/nsp1110H110YCatTat2323AY.330.001536
ORF1ab/nsp1110H110YCatTat2222AY.46.60.001589
ORF1ab/nsp1110H110YCatTat2121B.1.5750.006371
ORF1ab/nsp1110H110YCatTat2020AY.1200.000744
ORF1ab/nsp1110H110RcAtcGt2020AY.39.10.000792
ORF1ab/nsp1110H110YCatTat2020B.1.617.10.002579
ORF1ab/nsp1110H110RcAtcGt1919AY.1190.000671
ORF1ab/nsp1110H110YCatTat1919AY.140.001672
ORF1ab/nsp1110H110YCatTat1818AY.1180.001128
ORF1ab/nsp1110H110RcAtcGt1818AY.430.00008
ORF1ab/nsp1110H110YCatTat1818Q.10.002274
ORF1ab/nsp1110H110HcaTcaC1717AY.440.000103
ORF1ab/nsp1110H110YCatTat1717AY.450.002069
ORF1ab/nsp1110H110YCatTat1717AY.470.000529
ORF1ab/nsp1110H110RcAtcGt1717B.1.617.20.000064
ORF1ab/nsp1110H110YCatTat1717C.370.001973
ORF1ab/nsp1110H110YCatTat1616AY.60.000658
ORF1ab/nsp1110H110YCatTat1616B.1.1.3870.941176
ORF1ab/nsp1110H110YCatTat1616P.1.140.000765
ORF1ab/nsp1110H110YCatTat1313AY.230.000907
ORF1ab/nsp1110H110RcAtcGt1313AY.250.000078
ORF1ab/nsp1110H110YCatTat1313AY.340.001261
ORF1ab/nsp1110H110LcAtcTt1313AY.430.000058
ORF1ab/nsp1110H110YCatTat1313B.1.1.2140.000721
ORF1ab/nsp1110H110YCatTat1313B.1.1.2200.024164
ORF1ab/nsp1110H110RcAtcGt1313B.1.1.70.000012
ORF1ab/nsp1110H110YCatTat1212AY.850.005126
ORF1ab/nsp1110H110YCatTat1212B.1.160.260.029056
ORF1ab/nsp1110H110YCatTat1212B.1.160.290.050633
ORF1ab/nsp1110H110YCatTat1212B.1.3750.009836
ORF1ab/nsp1110H110YCatTat1212B.1.5640.005111
ORF1ab/nsp1110H110YCatTat1212B.1.6370.000877
ORF1ab/nsp1110H110YCatTat1111A.2.50.005489
ORF1ab/nsp1110H110HcaTcaC1111AY.1020.000292
ORF1ab/nsp1110H110RcAtcGt1011AY.440.000061
ORF1ab/nsp1110H110RcATcGC111AY.440.000006
ORF1ab/nsp1110H110YCatTat1111AY.75.10.001983
ORF1ab/nsp1110H110YCatTat1111B.1.5820.005397
ORF1ab/nsp1110H110YCatTat1010AY.1130.001424
ORF1ab/nsp1110H110YCatTat1010B.1.1.370.001929
ORF1ab/nsp1110H110YCatTat1010B.1.177.810.001893
ORF1ab/nsp1110H110YCatTat1010B.1.4740.019011
ORF1ab/nsp1110H110NCatAat99AY.1010.004414
ORF1ab/nsp1110H110HcaTcaC99AY.40.000014
ORF1ab/nsp1110H110YCatTat99B.1.3990.017408
ORF1ab/nsp1110H110YCatTat99B.1.4000.003861
ORF1ab/nsp1110H110YCatTat99B.1.5760.00816
ORF1ab/nsp1110H110YCatTat99B.1.5950.002349
ORF1ab/nsp1110H110RcAtcGt99B.1.6370.000658
ORF1ab/nsp1110H110PcAtcCt88All0.000002
ORF1ab/nsp1110H110YCatTat88AY.460.000833
ORF1ab/nsp1110H110HcaTcaC88AY.610.000838
ORF1ab/nsp1110H110YCatTat88AY.620.003486
ORF1ab/nsp1110H110YCatTat88AY.99.20.000737
ORF1ab/nsp1110H110HcaTcaC88B.10.000073
ORF1ab/nsp1110H110YCatTat88B.1.1.2650.025237
ORF1ab/nsp1110H110YCatTat88B.1.1.280.00249
ORF1ab/nsp1110H110YCatTat88B.1.1.440.019277
ORF1ab/nsp1110H110DCatGat88B.1.1.70.000007
ORF1ab/nsp1110H110YCatTat88B.1.1.700.002729
ORF1ab/nsp1110H110YCatTat88B.1.2400.001725
ORF1ab/nsp1110H110YCatTat88B.1.2580.000532
ORF1ab/nsp1110H110YCatTat88B.1.360.001167
ORF1ab/nsp1110H110YCatTat88B.1.5960.000697
ORF1ab/nsp1110H110YCatTat88B.1.6290.106667
ORF1ab/nsp1110H110YCatTat88R.10.00072
ORF1ab/nsp1110H110RcAtcGt77AY.1030.000043
ORF1ab/nsp1110H110YCatTat77AY.4.30.005892
ORF1ab/nsp1110H110YCatTat77AY.5.40.001937
ORF1ab/nsp1110H110RcAtcGt77AY.60.000288
ORF1ab/nsp1110H110YCatTat77AY.610.000733
ORF1ab/nsp1110H110YCatTat77AY.690.001307
ORF1ab/nsp1110H110YCatTat77AY.980.000553
ORF1ab/nsp1110H110LcAtcTt77B.1.1.70.000006
ORF1ab/nsp1110H110YCatTat77B.1.4510.057377
ORF1ab/nsp1110H110YCatTat66AY.1170.000507
ORF1ab/nsp1110H110YCatTat66AY.1210.000812
ORF1ab/nsp1110H110HcaTcaC66AY.230.000418
ORF1ab/nsp1110H110YCatTat66AY.360.000889
ORF1ab/nsp1110H110YCatTat66AY.540.000572
ORF1ab/nsp1110H110YCatTat66AY.590.003178
ORF1ab/nsp1110H110YCatTat66AY.650.003198
ORF1ab/nsp1110H110YCatTat66AY.90.000406
ORF1ab/nsp1110H110YCatTat66AY.9.20.00022
ORF1ab/nsp1110H110YCatTat66AY.900.004107
ORF1ab/nsp1110H110YCatTat66AY.940.002656
ORF1ab/nsp1110H110QcaTcaA66AY.980.000474
ORF1ab/nsp1110H110YCatTat66B0.000767
ORF1ab/nsp1110H110YCatTat66B.1.2340.000792
ORF1ab/nsp1110H110YCatTat66B.1.36.290.003104
ORF1ab/nsp1110H110YCatTat66B.400.002186
ORF1ab/nsp1110H110YCatTat66N.50.010601
ORF1ab/nsp1110H110YCatTat55A0.001935
ORF1ab/nsp1110H110YCatTat55AY.1080.005513
ORF1ab/nsp1110H110delCAT---55AY.40.000008
ORF1ab/nsp1110H110LcAtcTt55AY.40.000008
ORF1ab/nsp1110H110YCatTat55AY.5.30.001687
ORF1ab/nsp1110H110YCatTat55AY.570.003281
ORF1ab/nsp1110H110YCatTat55AY.680.001369
ORF1ab/nsp1110H110YCatTat55AY.780.007704
ORF1ab/nsp1110H110HcaTcaC55AY.98.10.000242
ORF1ab/nsp1110H110YCatTat55AY.990.005247
ORF1ab/nsp1110H110YCatTat55AY.99.10.007764
ORF1ab/nsp1110H110YCatTat55B.1.1.250.002843
ORF1ab/nsp1110H110YCatTat55B.1.1.2840.000537
ORF1ab/nsp1110H110YCatTat55B.1.1.2980.00431
ORF1ab/nsp1110H110YCatTat55B.1.1.3060.002192
ORF1ab/nsp1110H110YCatTat55B.1.1.3180.001509
ORF1ab/nsp1110H110YCatTat55B.1.1.390.002548
ORF1ab/nsp1110H110YCatTat55B.1.1.4340.001743
ORF1ab/nsp1110H110delCAT---55B.1.1.70.000004
ORF1ab/nsp1110H110YCatTat55B.1.177.70.000824
ORF1ab/nsp1110H110YCatTat55B.1.177.860.000917
ORF1ab/nsp1110H110YCatTat55B.1.5250.000566
ORF1ab/nsp1110H110YCatTat55P.1.120.00242
ORF1ab/nsp1110H110YCatTat55Q.30.000725
ORF1ab/nsp1110H110del1Cat-at24All0
ORF1ab/nsp1110H110del1CaT-aC14All0
ORF1ab/nsp1110H110del1CATT-C14All0
ORF1ab/nsp1110H110DCatGat44AY.1030.000025
ORF1ab/nsp1110H110YCatTat44AY.1050.002572
ORF1ab/nsp1110H110YCatTat44AY.116.10.001246
ORF1ab/nsp1110H110HcaTcaC44AY.30.00004
ORF1ab/nsp1110H110YCatTat44AY.350.000932
ORF1ab/nsp1110H110DCatGat44AY.40.000006
ORF1ab/nsp1110H110YCatTat44AY.4.50.00043
ORF1ab/nsp1110H110DCatGat44AY.430.000018
ORF1ab/nsp1110H110QcaTcaA34AY.430.000013
ORF1ab/nsp1110H110QcaTcaG14AY.430.000004
ORF1ab/nsp1110H110QcaTcaA44AY.440.000024
ORF1ab/nsp1110H110QcaTcaA34B.10.000027
ORF1ab/nsp1110H110QcaTcaG14B.10.000009
ORF1ab/nsp1110H110YCatTat44B.1.1.10.001307
ORF1ab/nsp1110H110YCatTat44B.1.1.3120.007648
ORF1ab/nsp1110H110YCatTat44B.1.1.3260.007042
ORF1ab/nsp1110H110delCAT---44B.1.1.330.001684
ORF1ab/nsp1110H110YCatTat44B.1.1.3470.072727
ORF1ab/nsp1110H110delCAT---44B.1.1.3480.003185
ORF1ab/nsp1110H110HcaTcaC44B.1.1.4640.005891
ORF1ab/nsp1110H110YCatTat44B.1.1.540.012085
ORF1ab/nsp1110H110HcaTcaC44B.1.1.700.001364
ORF1ab/nsp1110H110QcaTcaA44B.1.177.210.000306
ORF1ab/nsp1110H110YCatTat44B.1.177.440.002076
ORF1ab/nsp1110H110YCatTat44B.1.2320.002149
ORF1ab/nsp1110H110YCatTat44B.1.2390.004884
ORF1ab/nsp1110H110YCatTat44B.1.258.170.000416
ORF1ab/nsp1110H110YCatTat44B.1.2650.005083
ORF1ab/nsp1110H110YCatTat44B.1.3670.00317
ORF1ab/nsp1110H110HcaTcaC44B.1.4040.005208
ORF1ab/nsp1110H110YCatTat44B.1.4690.01444
ORF1ab/nsp1110H110YCatTat44D.20.0003
ORF1ab/nsp1110H110YCatTat44P.1.70.001277
ORF1ab/nsp1110H110YCatTat44P.20.000747
ORF1ab/nsp1110H110HcaTcaC33AY.1030.000019
ORF1ab/nsp1110H110RcAtcGt33AY.1180.000188
ORF1ab/nsp1110H110RcAtcGt33AY.200.000117
ORF1ab/nsp1110H110HcaTcaC33AY.250.000018
ORF1ab/nsp1110H110LcAtcTt33AY.250.000018
ORF1ab/nsp1110H110HcaTcaC33AY.330.0002
ORF1ab/nsp1110H110YCatTat33AY.380.001498
ORF1ab/nsp1110H110QcaTcaA23AY.40.000003
ORF1ab/nsp1110H110QcaTcaG13AY.40.000002
ORF1ab/nsp1110H110YCatTat33AY.4.2.10.000447
ORF1ab/nsp1110H110YCatTat33AY.410.000882
ORF1ab/nsp1110H110delCAT---33AY.430.000013
ORF1ab/nsp1110H110HcaTcaC33AY.470.000093
ORF1ab/nsp1110H110YCatTat33AY.520.002443
ORF1ab/nsp1110H110YCatTat33AY.600.002814
ORF1ab/nsp1110H110HcaTcaC33AY.750.000168
ORF1ab/nsp1110H110YCatTat33AY.790.003632
ORF1ab/nsp1110H110YCatTat33AY.810.005976
ORF1ab/nsp1110H110RcAtcGt33B.10.000027
ORF1ab/nsp1110H110RcAtcGt33B.1.10.000054
ORF1ab/nsp1110H110YCatTat33B.1.1.2160.002671
ORF1ab/nsp1110H110YCatTat33B.1.1.3880.136364
ORF1ab/nsp1110H110YCatTat33B.1.1.4850.05
ORF1ab/nsp1110H110YCatTat33B.1.1.500.002037
ORF1ab/nsp1110H110NCatAat33B.1.1.70.000003
ORF1ab/nsp1110H110QcaTcaA23B.1.1.70.000002
ORF1ab/nsp1110H110QcaTcaG13B.1.1.70.000001
ORF1ab/nsp1110H110delCAT---33B.1.20.000026
ORF1ab/nsp1110H110YCatTat33B.1.3490.002144
ORF1ab/nsp1110H110YCatTat33B.1.36.220.003623
ORF1ab/nsp1110H110YCatTat33B.1.3820.026786
ORF1ab/nsp1110H110YCatTat33B.1.3980.008929
ORF1ab/nsp1110H110YCatTat33B.1.4090.002344
ORF1ab/nsp1110H110YCatTat33B.1.438.10.000322
ORF1ab/nsp1110H110YCatTat33B.1.4500.034091
ORF1ab/nsp1110H110YCatTat33B.1.4620.021739
ORF1ab/nsp1110H110YCatTat33B.1.5700.008824
ORF1ab/nsp1110H110HcaTcaC33B.1.5950.000783
ORF1ab/nsp1110H110YCatTat33B.1.6040.051724
ORF1ab/nsp1110H110YCatTat33B.1.6280.001057
ORF1ab/nsp1110H110YCatTat33C.350.002322
ORF1ab/nsp1110H110QcaTcaA33P.10.000047
ORF1ab/nsp1110H110YCatTat33P.1.170.000485
ORF1ab/nsp1110H110QcaTcaA33P.20.00056
ORF1ab/nsp1110H110YCatTat33Q.40.001364
ORF1ab/nsp1110H110YCatTat33Q.80.000495
ORF1ab/nsp1110H110YCatTat220.111111
ORF1ab/nsp1110H110del2cATc--12All0
ORF1ab/nsp1110H110del2CAt--t12All0
ORF1ab/nsp1110H110HcaTcaC22AY.1160.000574
ORF1ab/nsp1110H110YCatTat22AY.160.000759
ORF1ab/nsp1110H110YCatTat22AY.190.002281
ORF1ab/nsp1110H110delCAT---22AY.250.000012
ORF1ab/nsp1110H110DCatGat22AY.260.000057
ORF1ab/nsp1110H110RcAtcGt22AY.260.000057
ORF1ab/nsp1110H110LcAtcTt22AY.290.000032
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ORF1ab/nsp1110H110PcAtcCt22AY.46.40.000329
ORF1ab/nsp1110H110HcaTcaC22AY.50.000041
ORF1ab/nsp1110H110QcaTcaG22AY.60.000082
ORF1ab/nsp1110H110RcAtcGt22AY.610.00021
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ORF1ab/nsp1110H110YCatTat22AY.700.000417
ORF1ab/nsp1110H110YCatTat22AY.720.002721
ORF1ab/nsp1110H110YCatTat22AY.750.000112
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ORF1ab/nsp1110H110YCatTat22AY.840.000875
ORF1ab/nsp1110H110YCatTat22AY.860.00166
ORF1ab/nsp1110H110YCatTat22AY.9.10.000167
ORF1ab/nsp1110H110YCatTat22AY.930.000546
ORF1ab/nsp1110H110RcAtcGt22AY.940.000885
ORF1ab/nsp1110H110HcaTcaC22AY.980.000158
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ORF1ab/nsp1110H110QcaTcaA22B.1.10.000036
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ORF1ab/nsp1110H110YCatTat22B.1.1.1920.004619
ORF1ab/nsp1110H110YCatTat22B.1.1.2310.006192
ORF1ab/nsp1110H110RcAtcGt22B.1.1.250.001137
ORF1ab/nsp1110H110YCatTat22B.1.1.3160.00185
ORF1ab/nsp1110H110YCatTat22B.1.1.3170.000823
ORF1ab/nsp1110H110HcaTcaC22B.1.1.3170.000823
ORF1ab/nsp1110H110YCatTat22B.1.1.330.000842
ORF1ab/nsp1110H110YCatTat22B.1.1.3620.011236
ORF1ab/nsp1110H110YCatTat22B.1.1.3920.105263
ORF1ab/nsp1110H110YCatTat22B.1.1.5260.007092
ORF1ab/nsp1110H110HcaTcaC22B.1.1600.000062
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ORF1ab/nsp1110H110YCatTat22B.1.160.250.022222
ORF1ab/nsp1110H110YCatTat22B.1.160.300.005952
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ORF1ab/nsp1110H110YCatTat22B.1.177.40.000422
ORF1ab/nsp1110H110delCAT---22B.1.177.540.001213
ORF1ab/nsp1110H110YCatTat22B.1.177.730.001133
ORF1ab/nsp1110H110PcAtcCt22B.1.20.000018
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ORF1ab/nsp1110H110LcAtcTt22B.1.2580.000133
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ORF1ab/nsp1110H110YCatTat22B.1.3110.000549
ORF1ab/nsp1110H110YCatTat22B.1.3130.013158
ORF1ab/nsp1110H110HcaTcaC22B.1.360.000292
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ORF1ab/nsp1110H110YCatTat22B.1.36.170.000988
ORF1ab/nsp1110H110RcAtcGt22B.1.4090.001563
ORF1ab/nsp1110H110YCatTat22B.1.4480.005249
ORF1ab/nsp1110H110YCatTat22B.1.4590.008163
ORF1ab/nsp1110H110YCatTat22B.1.4710.005464
ORF1ab/nsp1110H110YCatTat22B.1.4800.004975
ORF1ab/nsp1110H110YCatTat22B.1.4970.00063
ORF1ab/nsp1110H110YCatTat22B.1.5050.008772
ORF1ab/nsp1110H110YCatTat22B.1.5090.001732
ORF1ab/nsp1110H110HcaTcaC22B.1.5260.000047
ORF1ab/nsp1110H110YCatTat22B.1.5620.037037
ORF1ab/nsp1110H110YCatTat22B.1.5770.001375
ORF1ab/nsp1110H110RcAtcGt22B.1.5960.000174
ORF1ab/nsp1110H110YCatTat22B.1.6090.000959
ORF1ab/nsp1110H110YCatTat22B.1.780.017094
ORF1ab/nsp1110H110YCatTat22B.1.90.012346
ORF1ab/nsp1110H110YCatTat22B.6.60.001778
ORF1ab/nsp1110H110YCatTat22C.10.004785
ORF1ab/nsp1110H110LcAtcTt22C.1.20.008511
ORF1ab/nsp1110H110RcAtcGt22C.230.011628
ORF1ab/nsp1110H110YCatTat22C.360.001821
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ORF1ab/nsp1110H110delCAT---22N.60.014184
ORF1ab/nsp1110H110DCatGat22P.1.70.000639
ORF1ab/nsp1110H110delCAT---22P.20.000373
ORF1ab/nsp1110H110HcaTcaC22P.20.000373
ORF1ab/nsp1110H110YCatTat22U.30.007722
ORF1ab/nsp1110H110LcAtcTt110.055556
ORF1ab/nsp1110H110RcAtcGt110.055556
ORF1ab/nsp1110H110delCAT---11A0.000387
ORF1ab/nsp1110H110YCatTat11A.2.20.001689
ORF1ab/nsp1110H110YCatTat11A.2.5.10.004808
ORF1ab/nsp1110H110YCatTat11A.30.002096
ORF1ab/nsp1110H110YCatTat11A.50.001923
ORF1ab/nsp1110H110GCATGGC11All0
ORF1ab/nsp1110H110TCATACG11All0
ORF1ab/nsp1110H110FCAtTTt11All0
ORF1ab/nsp1110H110YCatTat11AY.10.000396
ORF1ab/nsp1110H110RcAtcGt11AY.1020.000027
ORF1ab/nsp1110H110DCatGat11AY.1020.000027
ORF1ab/nsp1110H110LcAtcTt11AY.1030.000006
ORF1ab/nsp1110H110YCatTat11AY.1040.001984
ORF1ab/nsp1110H110YCatTat11AY.1060.000335
ORF1ab/nsp1110H110YCatTat11AY.1090.00074
ORF1ab/nsp1110H110NCatAat11AY.1110.000183
ORF1ab/nsp1110H110RcAtcGt11AY.1110.000183
ORF1ab/nsp1110H110HcaTcaC11AY.1110.000183
ORF1ab/nsp1110H110YCatTat11AY.1140.000231
ORF1ab/nsp1110H110delCAT---11AY.1160.000287
ORF1ab/nsp1110H110YCatTat11AY.1160.000287
ORF1ab/nsp1110H110delCAT---11AY.120.000316
ORF1ab/nsp1110H110YCatTat11AY.120.000316
ORF1ab/nsp1110H110HcaTcaC11AY.1200.000037
ORF1ab/nsp1110H110HcaTcaC11AY.120.2.10.000498
ORF1ab/nsp1110H110YCatTat11AY.120.2.10.000498
ORF1ab/nsp1110H110YCatTat11AY.16.10.00047
ORF1ab/nsp1110H110HcaTcaC11AY.200.000039
ORF1ab/nsp1110H110YCatTat11AY.210.001898
ORF1ab/nsp1110H110YCatTat11AY.240.000431
ORF1ab/nsp1110H110RcAtcGt11AY.240.000431
ORF1ab/nsp1110H110DCatGat11AY.250.000006
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ORF1ab/nsp1110H110NCatAat11AY.260.000028
ORF1ab/nsp1110H110QcaTcaG11AY.260.000028
ORF1ab/nsp1110H110HcaTcaC11AY.260.000028
ORF1ab/nsp1110H110HcaTcaC11AY.290.000016
ORF1ab/nsp1110H110QcaTcaG11AY.30.00001
ORF1ab/nsp1110H110DCatGat11AY.3.10.000085
ORF1ab/nsp1110H110HcaTcaC11AY.300.000396
ORF1ab/nsp1110H110HcaTcaC11AY.320.000532
ORF1ab/nsp1110H110QcaTcaA11AY.330.000067
ORF1ab/nsp1110H110YCatTat11AY.34.10.00051
ORF1ab/nsp1110H110YCatTat11AY.370.000316
ORF1ab/nsp1110H110delCAT---11AY.380.000499
ORF1ab/nsp1110H110RcAtcGt11AY.390.000025
ORF1ab/nsp1110H110HcaTcaC11AY.390.000025
ORF1ab/nsp1110H110YCatTat11AY.4.10.000737
ORF1ab/nsp1110H110RcAtcGt11AY.4.20.000022
ORF1ab/nsp1110H110DCatGat11AY.4.20.000022
ORF1ab/nsp1110H110HcaTcaC11AY.4.40.000409
ORF1ab/nsp1110H110YCatTat11AY.4.40.000409
ORF1ab/nsp1110H110delCAT---11AY.4.50.000107
ORF1ab/nsp1110H110NCatAat11AY.430.000004
ORF1ab/nsp1110H110GCATGGC11AY.440.000006
ORF1ab/nsp1110H110NCatAat11AY.440.000006
ORF1ab/nsp1110H110LcAtcTt11AY.450.000122
ORF1ab/nsp1110H110DCatGat11AY.460.000104
ORF1ab/nsp1110H110HcaTcaC11AY.46.10.001027
ORF1ab/nsp1110H110QcaTcaA11AY.46.20.000635
ORF1ab/nsp1110H110YCatTat11AY.46.30.000934
ORF1ab/nsp1110H110delCAT---11AY.46.50.000198
ORF1ab/nsp1110H110DCatGat11AY.470.000031
ORF1ab/nsp1110H110YCatTat11AY.510.000909
ORF1ab/nsp1110H110HcaTcaC11AY.540.000095
ORF1ab/nsp1110H110YCatTat11AY.580.000907
ORF1ab/nsp1110H110delCAT---11AY.640.000595
ORF1ab/nsp1110H110delCAT---11AY.650.000533
ORF1ab/nsp1110H110NCatAat11AY.690.000187
ORF1ab/nsp1110H110RcAtcGt11AY.710.000475
ORF1ab/nsp1110H110YCatTat11AY.740.000116
ORF1ab/nsp1110H110HcaTcaC11AY.75.10.00018
ORF1ab/nsp1110H110DCatGat11AY.75.10.00018
ORF1ab/nsp1110H110YCatTat11AY.770.001127
ORF1ab/nsp1110H110HcaTcaC11AY.790.001211
ORF1ab/nsp1110H110YCatTat11AY.870.000833
ORF1ab/nsp1110H110DCatGat11AY.90.000068
ORF1ab/nsp1110H110RcAtcGt11AY.90.000068
ORF1ab/nsp1110H110QcaTcaA11AY.9.10.000084
ORF1ab/nsp1110H110delCAT---11AY.9.10.000084
ORF1ab/nsp1110H110HcaTcaC11AY.920.000287
ORF1ab/nsp1110H110YCatTat11AY.920.000287
ORF1ab/nsp1110H110YCatTat11AY.950.000761
ORF1ab/nsp1110H110delCAT---11AY.950.000761
ORF1ab/nsp1110H110RcAtcGt11AY.99.20.000092
ORF1ab/nsp1110H110YCatTat11AZ.10.000867
ORF1ab/nsp1110H110YCatTat11AZ.20.000821
ORF1ab/nsp1110H110QcaTcaA11B0.000128
ORF1ab/nsp1110H110RcAtcGt11B0.000128
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ORF1ab/nsp1110H110PcAtcCt11B.10.000009
ORF1ab/nsp1110H110NCatAat11B.1.10.000018
ORF1ab/nsp1110H110FCAtTTt11B.1.10.000018
ORF1ab/nsp1110H110delCAT---11B.1.10.000018
ORF1ab/nsp1110H110YCatTat11B.1.1.100.001115
ORF1ab/nsp1110H110YCatTat11B.1.1.1150.008929
ORF1ab/nsp1110H110YCatTat11B.1.1.1530.001095
ORF1ab/nsp1110H110YCatTat11B.1.1.1980.001468
ORF1ab/nsp1110H110YCatTat11B.1.1.2070.001182
ORF1ab/nsp1110H110QcaTcaA11B.1.1.250.000569
ORF1ab/nsp1110H110YCatTat11B.1.1.2610.008621
ORF1ab/nsp1110H110YCatTat11B.1.1.2630.001558
ORF1ab/nsp1110H110YCatTat11B.1.1.2690.001353
ORF1ab/nsp1110H110YCatTat11B.1.1.2730.006757
ORF1ab/nsp1110H110QcaTcaG11B.1.1.2910.000742
ORF1ab/nsp1110H110YCatTat11B.1.1.2940.001266
ORF1ab/nsp1110H110YCatTat11B.1.1.3010.001179
ORF1ab/nsp1110H110YCatTat11B.1.1.3030.002762
ORF1ab/nsp1110H110RcAtcGt11B.1.1.3040.002809
ORF1ab/nsp1110H110YCatTat11B.1.1.3100.015152
ORF1ab/nsp1110H110YCatTat11B.1.1.3110.000358
ORF1ab/nsp1110H110YCatTat11B.1.1.3420.0625
ORF1ab/nsp1110H110YCatTat11B.1.1.3510.002793
ORF1ab/nsp1110H110YCatTat11B.1.1.3690.000446
ORF1ab/nsp1110H110YCatTat11B.1.1.3720.000689
ORF1ab/nsp1110H110YCatTat11B.1.1.3850.004464
ORF1ab/nsp1110H110YCatTat11B.1.1.3970.002252
ORF1ab/nsp1110H110YCatTat11B.1.1.4090.002833
ORF1ab/nsp1110H110YCatTat11B.1.1.4160.000905
ORF1ab/nsp1110H110YCatTat11B.1.1.50.008333
ORF1ab/nsp1110H110YCatTat11B.1.1.5120.028571
ORF1ab/nsp1110H110HcaTcaC11B.1.1.5230.001563
ORF1ab/nsp1110H110YCatTat11B.1.1.630.000386
ORF1ab/nsp1110H110TCATACG11B.1.1.70.000001
ORF1ab/nsp1110H110NCatAat11B.1.110.30.000718
ORF1ab/nsp1110H110YCatTat11B.1.1110.001175
ORF1ab/nsp1110H110YCatTat11B.1.1260.001276
ORF1ab/nsp1110H110YCatTat11B.1.160.140.002119
ORF1ab/nsp1110H110YCatTat11B.1.160.160.000929
ORF1ab/nsp1110H110YCatTat11B.1.160.170.001701
ORF1ab/nsp1110H110YCatTat11B.1.160.280.002924
ORF1ab/nsp1110H110QcaTcaA11B.1.160.300.002976
ORF1ab/nsp1110H110YCatTat11B.1.160.310.008065
ORF1ab/nsp1110H110YCatTat11B.1.160.80.001289
ORF1ab/nsp1110H110PcAtcCt11B.1.1770.000013
ORF1ab/nsp1110H110RcAtcGt11B.1.1770.000013
ORF1ab/nsp1110H110delCAT---11B.1.1770.000013
ORF1ab/nsp1110H110DCatGat11B.1.1770.000013
ORF1ab/nsp1110H110QcaTcaG11B.1.1770.000013
ORF1ab/nsp1110H110del2cATc--11B.1.1770.000013
ORF1ab/nsp1110H110YCatTat11B.1.177.120.000152
ORF1ab/nsp1110H110YCatTat11B.1.177.160.000664
ORF1ab/nsp1110H110YCatTat11B.1.177.170.000821
ORF1ab/nsp1110H110YCatTat11B.1.177.230.003236
ORF1ab/nsp1110H110YCatTat11B.1.177.290.066667
ORF1ab/nsp1110H110YCatTat11B.1.177.310.011494
ORF1ab/nsp1110H110HcaTcaC11B.1.177.320.00135
ORF1ab/nsp1110H110RcAtcGt11B.1.177.330.001645
ORF1ab/nsp1110H110YCatTat11B.1.177.400.005155
ORF1ab/nsp1110H110YCatTat11B.1.177.410.0025
ORF1ab/nsp1110H110LcAtcTt11B.1.177.450.000381
ORF1ab/nsp1110H110YCatTat11B.1.177.450.000381
ORF1ab/nsp1110H110YCatTat11B.1.177.470.012987
ORF1ab/nsp1110H110YCatTat11B.1.177.500.004695
ORF1ab/nsp1110H110YCatTat11B.1.177.520.001757
ORF1ab/nsp1110H110YCatTat11B.1.177.530.002392
ORF1ab/nsp1110H110delCAT---11B.1.177.570.000281
ORF1ab/nsp1110H110YCatTat11B.1.177.620.001192
ORF1ab/nsp1110H110YCatTat11B.1.177.630.002703
ORF1ab/nsp1110H110HcaTcaC11B.1.177.650.000665
ORF1ab/nsp1110H110YCatTat11B.1.177.750.001041
ORF1ab/nsp1110H110YCatTat11B.1.177.760.002494
ORF1ab/nsp1110H110YCatTat11B.1.177.80.000752
ORF1ab/nsp1110H110YCatTat11B.1.177.820.000477
ORF1ab/nsp1110H110HcaTcaC11B.1.177.860.000183
ORF1ab/nsp1110H110YCatTat11B.1.177.90.001332
ORF1ab/nsp1110H110delCAT---11B.1.1790.003759
ORF1ab/nsp1110H110HcaTcaC11B.1.20.000009
ORF1ab/nsp1110H110RcAtcGt11B.1.20.000009
ORF1ab/nsp1110H110QcaTcaA11B.1.20.000009
ORF1ab/nsp1110H110YCatTat11B.1.2100.002132
ORF1ab/nsp1110H110delCAT---11B.1.2110.025
ORF1ab/nsp1110H110YCatTat11B.1.214.20.0006
ORF1ab/nsp1110H110YCatTat11B.1.221.20.004016
ORF1ab/nsp1110H110RcAtcGt11B.1.2320.000537
ORF1ab/nsp1110H110YCatTat11B.1.2360.002053
ORF1ab/nsp1110H110YCatTat11B.1.2410.000812
ORF1ab/nsp1110H110QcaTcaA11B.1.2430.00007
ORF1ab/nsp1110H110YCatTat11B.1.2470.014925
ORF1ab/nsp1110H110del1CaT-aC11B.1.2580.000067
ORF1ab/nsp1110H110QcaTcaA11B.1.2580.000067
ORF1ab/nsp1110H110YCatTat11B.1.258.140.00098
ORF1ab/nsp1110H110YCatTat11B.1.2790.000514
ORF1ab/nsp1110H110YCatTat11B.1.3080.034483
ORF1ab/nsp1110H110HcaTcaC11B.1.3110.000275
ORF1ab/nsp1110H110YCatTat11B.1.3190.003049
ORF1ab/nsp1110H110YCatTat11B.1.3240.001605
ORF1ab/nsp1110H110YCatTat11B.1.3290.000608
ORF1ab/nsp1110H110YCatTat11B.1.3320.003497
ORF1ab/nsp1110H110YCatTat11B.1.3370.005587
ORF1ab/nsp1110H110HcaTcaC11B.1.3490.000715
ORF1ab/nsp1110H110LcAtcTt11B.1.3510.00003
ORF1ab/nsp1110H110delCAT---11B.1.3510.00003
ORF1ab/nsp1110H110YCatTat11B.1.3590.022727
ORF1ab/nsp1110H110RcAtcGt11B.1.360.000146
ORF1ab/nsp1110H110LcAtcTt11B.1.360.000146
ORF1ab/nsp1110H110delCAT---11B.1.360.000146
ORF1ab/nsp1110H110YCatTat11B.1.36.180.00042
ORF1ab/nsp1110H110RcAtcGt11B.1.36.290.000517
ORF1ab/nsp1110H110YCatTat11B.1.36.350.002604
ORF1ab/nsp1110H110YCatTat11B.1.36.360.000602
ORF1ab/nsp1110H110LcAtcTt11B.1.3870.04
ORF1ab/nsp1110H110YCatTat11B.1.3960.000706
ORF1ab/nsp1110H110YCatTat11B.1.415.10.007576
ORF1ab/nsp1110H110YCatTat11B.1.4160.001269
ORF1ab/nsp1110H110YCatTat11B.1.4220.000812
ORF1ab/nsp1110H110delCAT---11B.1.4270.00005
ORF1ab/nsp1110H110YCatTat11B.1.4280.00102
ORF1ab/nsp1110H110del2CAt--t11B.1.4290.000024
ORF1ab/nsp1110H110RcAtcGt11B.1.4290.000024
ORF1ab/nsp1110H110delCAT---11B.1.4290.000024
ORF1ab/nsp1110H110NCatAat11B.1.4290.000024
ORF1ab/nsp1110H110DCatGat11B.1.4290.000024
ORF1ab/nsp1110H110YCatTat11B.1.4360.001029
ORF1ab/nsp1110H110YCatTat11B.1.4680.005714
ORF1ab/nsp1110H110PcAtcCt11B.1.5170.000427
ORF1ab/nsp1110H110RcAtcGt11B.1.5260.000024
ORF1ab/nsp1110H110YCatTat11B.1.5370.02
ORF1ab/nsp1110H110YCatTat11B.1.5380.008065
ORF1ab/nsp1110H110YCatTat11B.1.5470.02439
ORF1ab/nsp1110H110del1Cat-at11B.1.5510.00129
ORF1ab/nsp1110H110YCatTat11B.1.5560.007519
ORF1ab/nsp1110H110YCatTat11B.1.5610.000397
ORF1ab/nsp1110H110YCatTat11B.1.5650.00081
ORF1ab/nsp1110H110YCatTat11B.1.5720.025
ORF1ab/nsp1110H110YCatTat11B.1.5780.017857
ORF1ab/nsp1110H110YCatTat11B.1.5890.007576
ORF1ab/nsp1110H110DCatGat11B.1.5960.000087
ORF1ab/nsp1110H110NCatAat11B.1.5960.000087
ORF1ab/nsp1110H110YCatTat11B.1.596.10.009346
ORF1ab/nsp1110H110YCatTat11B.1.5990.00365
ORF1ab/nsp1110H110del1CATT-C11B.1.617.20.000004
ORF1ab/nsp1110H110QcaTcaA11B.1.617.20.000004
ORF1ab/nsp1110H110DCatGat11B.1.617.20.000004
ORF1ab/nsp1110H110LcAtcTt11B.1.617.20.000004
ORF1ab/nsp1110H110QcaTcaA11B.1.6210.000089
ORF1ab/nsp1110H110YCatTat11B.1.6230.000536
ORF1ab/nsp1110H110YCatTat11B.1.6270.00202
ORF1ab/nsp1110H110YCatTat11B.30.000831
ORF1ab/nsp1110H110YCatTat11B.40.002208
ORF1ab/nsp1110H110YCatTat11B.610.005747
ORF1ab/nsp1110H110delCAT---11C.170.055556
ORF1ab/nsp1110H110YCatTat11C.20.016129
ORF1ab/nsp1110H110YCatTat11C.230.005814
ORF1ab/nsp1110H110delCAT---11C.350.000774
ORF1ab/nsp1110H110YCatTat11C.36.30.000567
ORF1ab/nsp1110H110NCatAat11D.20.000075
ORF1ab/nsp1110H110YCatTat11K.30.006173
ORF1ab/nsp1110H110YCatTat11N.40.004255
ORF1ab/nsp1110H110RcAtcGt11P.10.000016
ORF1ab/nsp1110H110LcAtcTt11P.10.000016
ORF1ab/nsp1110H110QcaTcaA11P.1.120.000484
ORF1ab/nsp1110H110YCatTat11P.1.20.001156
ORF1ab/nsp1110H110HcaTcaC11P.1.60.001946
ORF1ab/nsp1110H110YCatTat11P.1.90.004808
ORF1ab/nsp1110H110HcaTcaC11P.30.001595
ORF1ab/nsp1110H110YCatTat11P.30.001595
ORF1ab/nsp1110H110YCatTat11P.60.003145
ORF1ab/nsp1110H110YCatTat11Q.70.001111
ORF1ab/nsp1110H110PcAtcCt11Q.80.000165
ORF1ab/nsp1110H110HcaTcaC11R.10.00009