CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 110

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	110	H110Y	H110Y	nonsyn	Cat	Tat	17109	17108	0.999942	593-595
ORF1ab/nsp1	110	H110Y	H110Y	nonsyn	CaT	TaC	17109	1	0.0000584488	593-595
ORF1ab/nsp1	110	H110R	H110R	nonsyn	cAt	cGt	807	806	0.998761	593-595
ORF1ab/nsp1	110	H110R	H110R	nonsyn	cAT	cGC	807	1	0.00123916	593-595
ORF1ab/nsp1	110	H110H	H110H	syn	caT	caC	283	283	1	593-595
ORF1ab/nsp1	110	H110del	H110del	del	CAT	---	58	58	1	593-595
ORF1ab/nsp1	110	H110Q	H110Q	nonsyn	caT	caA	54	44	0.814815	593-595
ORF1ab/nsp1	110	H110Q	H110Q	nonsyn	caT	caG	54	10	0.185185	593-595
ORF1ab/nsp1	110	H110L	H110L	nonsyn	cAt	cTt	43	43	1	593-595
ORF1ab/nsp1	110	H110D	H110D	nonsyn	Cat	Gat	38	38	1	593-595
ORF1ab/nsp1	110	H110N	H110N	nonsyn	Cat	Aat	24	24	1	593-595
ORF1ab/nsp1	110	H110P	H110P	nonsyn	cAt	cCt	8	8	1	593-595
ORF1ab/nsp1	110	H110del1	H110del1	del	Cat	-at	4	2	0.5	593-595
ORF1ab/nsp1	110	H110del1	H110del1	del	CaT	-aC	4	1	0.25	593-595
ORF1ab/nsp1	110	H110del1	H110del1	del	CAT	T-C	4	1	0.25	593-595
ORF1ab/nsp1	110	H110del2	H110del2	del	cAT	c--	2	1	0.5	593-595
ORF1ab/nsp1	110	H110del2	H110del2	del	CAt	--t	2	1	0.5	593-595
ORF1ab/nsp1	110	H110F	H110F	nonsyn	CAt	TTt	1	1	1	593-595
ORF1ab/nsp1	110	H110T	H110T	nonsyn	CAT	ACG	1	1	1	593-595
ORF1ab/nsp1	110	H110G	H110G	nonsyn	CAT	GGC	1	1	1	593-595

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	110	H110Y	Cat	Tat	17108	17109	All	0.003272
ORF1ab/nsp1	110	H110Y	CaT	TaC	1	17109	All	0
ORF1ab/nsp1	110	H110Y	Cat	Tat	4872	4872	B.1.1.7	0.004362
ORF1ab/nsp1	110	H110Y	Cat	Tat	1371	1372	AY.26	0.038813
ORF1ab/nsp1	110	H110Y	CaT	TaC	1	1372	AY.26	0.000028
ORF1ab/nsp1	110	H110Y	Cat	Tat	1294	1294	B.1.429	0.030446
ORF1ab/nsp1	110	H110Y	Cat	Tat	1202	1202	B.1.177.21	0.091917
ORF1ab/nsp1	110	H110R	cAt	cGt	806	807	All	0.000154
ORF1ab/nsp1	110	H110R	cAT	cGC	1	807	All	0
ORF1ab/nsp1	110	H110Y	Cat	Tat	613	613	AY.4	0.000954
ORF1ab/nsp1	110	H110Y	Cat	Tat	556	556	B.1.617.2	0.002094
ORF1ab/nsp1	110	H110Y	Cat	Tat	482	482	AY.39.1	0.019094
ORF1ab/nsp1	110	H110Y	Cat	Tat	455	455	B.1.466.2	0.178013
ORF1ab/nsp1	110	H110Y	Cat	Tat	434	434	B.1.177	0.005715
ORF1ab/nsp1	110	H110Y	Cat	Tat	411	411	B.1.177.5	0.510559
ORF1ab/nsp1	110	H110R	cAt	cGt	341	341	B.1.1.214	0.018911
ORF1ab/nsp1	110	H110Y	Cat	Tat	330	330	AY.3	0.003282
ORF1ab/nsp1	110	H110H	caT	caC	283	283	All	0.000054
ORF1ab/nsp1	110	H110Y	Cat	Tat	262	262	AY.25	0.001576
ORF1ab/nsp1	110	H110Y	Cat	Tat	258	258	P.1	0.004065
ORF1ab/nsp1	110	H110R	cAt	cGt	257	257	AY.4	0.0004
ORF1ab/nsp1	110	H110Y	Cat	Tat	255	255	AY.43	0.00113
ORF1ab/nsp1	110	H110Y	Cat	Tat	215	215	B.1.2	0.001893
ORF1ab/nsp1	110	H110Y	Cat	Tat	193	193	AY.103	0.001198
ORF1ab/nsp1	110	H110Y	Cat	Tat	169	169	AY.10	0.08956
ORF1ab/nsp1	110	H110Y	Cat	Tat	150	150	B.1	0.001374
ORF1ab/nsp1	110	H110Y	Cat	Tat	147	147	B.1.1	0.002667
ORF1ab/nsp1	110	H110Y	Cat	Tat	127	127	B.1.421	0.947761
ORF1ab/nsp1	110	H110Y	Cat	Tat	126	126	AY.5	0.002602
ORF1ab/nsp1	110	H110Y	Cat	Tat	125	125	AY.44	0.000761
ORF1ab/nsp1	110	H110Y	Cat	Tat	118	118	B.1.177.87	0.085881
ORF1ab/nsp1	110	H110Y	Cat	Tat	107	107	B.1.214.4	0.972727
ORF1ab/nsp1	110	H110Y	Cat	Tat	99	99	B.1.160	0.003088
ORF1ab/nsp1	110	H110Y	Cat	Tat	92	92	B.1.1.222	0.018768
ORF1ab/nsp1	110	H110Y	Cat	Tat	89	89	B.1.526	0.002092
ORF1ab/nsp1	110	H110Y	Cat	Tat	83	83	AY.73	0.055223
ORF1ab/nsp1	110	H110Y	Cat	Tat	77	77	B.1.351	0.002289
ORF1ab/nsp1	110	H110H	caT	caC	74	74	B.1.1.218	0.569231
ORF1ab/nsp1	110	H110Y	Cat	Tat	68	68	B.1.427	0.003434
ORF1ab/nsp1	110	H110Y	Cat	Tat	68	68	B.1.622	0.883117
ORF1ab/nsp1	110	H110Y	Cat	Tat	65	65	AY.27	0.004207
ORF1ab/nsp1	110	H110Y	Cat	Tat	64	64	AY.30	0.025326
ORF1ab/nsp1	110	H110Y	Cat	Tat	64	64	AY.39	0.001582
ORF1ab/nsp1	110	H110Y	Cat	Tat	62	62	P.1.15	0.014405
ORF1ab/nsp1	110	H110del	CAT	---	58	58	All	0.000011
ORF1ab/nsp1	110	H110Y	Cat	Tat	56	56	B.1.36.20	0.949153
ORF1ab/nsp1	110	H110Q	caT	caA	44	54	All	0.000008
ORF1ab/nsp1	110	H110Q	caT	caG	10	54	All	0.000002
ORF1ab/nsp1	110	H110Y	Cat	Tat	54	54	AY.102	0.001432
ORF1ab/nsp1	110	H110Y	Cat	Tat	54	54	B.1.221	0.003836
ORF1ab/nsp1	110	H110Y	Cat	Tat	54	54	B.1.621	0.00478
ORF1ab/nsp1	110	H110Y	Cat	Tat	53	53	B.1.1.522	0.913793
ORF1ab/nsp1	110	H110Y	Cat	Tat	52	52	AY.29	0.00082
ORF1ab/nsp1	110	H110Y	Cat	Tat	50	50	AD.2	0.010948
ORF1ab/nsp1	110	H110Y	Cat	Tat	47	47	AY.111	0.008608
ORF1ab/nsp1	110	H110Y	Cat	Tat	46	46	AY.20	0.001788
ORF1ab/nsp1	110	H110L	cAt	cTt	43	43	All	0.000008
ORF1ab/nsp1	110	H110Y	Cat	Tat	41	41	AY.4.2	0.000889
ORF1ab/nsp1	110	H110H	caT	caC	41	41	B.1.1.7	0.000037
ORF1ab/nsp1	110	H110Y	Cat	Tat	39	39	AY.3.1	0.003325
ORF1ab/nsp1	110	H110D	Cat	Gat	38	38	All	0.000007
ORF1ab/nsp1	110	H110Y	Cat	Tat	38	38	AY.98.1	0.00184
ORF1ab/nsp1	110	H110Y	Cat	Tat	35	35	AY.100	0.00161
ORF1ab/nsp1	110	H110Y	Cat	Tat	33	33	B.1.243	0.002296
ORF1ab/nsp1	110	H110Y	Cat	Tat	30	30	AY.42	0.001207
ORF1ab/nsp1	110	H110Y	Cat	Tat	28	28	P.1.16	0.010475
ORF1ab/nsp1	110	H110R	cAt	cGt	27	27	AY.46.6	0.00195
ORF1ab/nsp1	110	H110Y	Cat	Tat	27	27	B.1.1.519	0.001072
ORF1ab/nsp1	110	H110Y	Cat	Tat	27	27	B.1.369	0.007701
ORF1ab/nsp1	110	H110H	caT	caC	27	27	B.1.617.2	0.000102
ORF1ab/nsp1	110	H110Y	Cat	Tat	25	25	AY.119	0.000883
ORF1ab/nsp1	110	H110N	Cat	Aat	24	24	All	0.000005
ORF1ab/nsp1	110	H110Y	Cat	Tat	23	23	AY.33	0.001536
ORF1ab/nsp1	110	H110Y	Cat	Tat	22	22	AY.46.6	0.001589
ORF1ab/nsp1	110	H110Y	Cat	Tat	21	21	B.1.575	0.006371
ORF1ab/nsp1	110	H110Y	Cat	Tat	20	20	AY.120	0.000744
ORF1ab/nsp1	110	H110R	cAt	cGt	20	20	AY.39.1	0.000792
ORF1ab/nsp1	110	H110Y	Cat	Tat	20	20	B.1.617.1	0.002579
ORF1ab/nsp1	110	H110R	cAt	cGt	19	19	AY.119	0.000671
ORF1ab/nsp1	110	H110Y	Cat	Tat	19	19	AY.14	0.001672
ORF1ab/nsp1	110	H110Y	Cat	Tat	18	18	AY.118	0.001128
ORF1ab/nsp1	110	H110R	cAt	cGt	18	18	AY.43	0.00008
ORF1ab/nsp1	110	H110Y	Cat	Tat	18	18	Q.1	0.002274
ORF1ab/nsp1	110	H110H	caT	caC	17	17	AY.44	0.000103
ORF1ab/nsp1	110	H110Y	Cat	Tat	17	17	AY.45	0.002069
ORF1ab/nsp1	110	H110Y	Cat	Tat	17	17	AY.47	0.000529
ORF1ab/nsp1	110	H110R	cAt	cGt	17	17	B.1.617.2	0.000064
ORF1ab/nsp1	110	H110Y	Cat	Tat	17	17	C.37	0.001973
ORF1ab/nsp1	110	H110Y	Cat	Tat	16	16	AY.6	0.000658
ORF1ab/nsp1	110	H110Y	Cat	Tat	16	16	B.1.1.387	0.941176
ORF1ab/nsp1	110	H110Y	Cat	Tat	16	16	P.1.14	0.000765
ORF1ab/nsp1	110	H110Y	Cat	Tat	13	13	AY.23	0.000907
ORF1ab/nsp1	110	H110R	cAt	cGt	13	13	AY.25	0.000078
ORF1ab/nsp1	110	H110Y	Cat	Tat	13	13	AY.34	0.001261
ORF1ab/nsp1	110	H110L	cAt	cTt	13	13	AY.43	0.000058
ORF1ab/nsp1	110	H110Y	Cat	Tat	13	13	B.1.1.214	0.000721
ORF1ab/nsp1	110	H110Y	Cat	Tat	13	13	B.1.1.220	0.024164
ORF1ab/nsp1	110	H110R	cAt	cGt	13	13	B.1.1.7	0.000012
ORF1ab/nsp1	110	H110Y	Cat	Tat	12	12	AY.85	0.005126
ORF1ab/nsp1	110	H110Y	Cat	Tat	12	12	B.1.160.26	0.029056
ORF1ab/nsp1	110	H110Y	Cat	Tat	12	12	B.1.160.29	0.050633
ORF1ab/nsp1	110	H110Y	Cat	Tat	12	12	B.1.375	0.009836
ORF1ab/nsp1	110	H110Y	Cat	Tat	12	12	B.1.564	0.005111
ORF1ab/nsp1	110	H110Y	Cat	Tat	12	12	B.1.637	0.000877
ORF1ab/nsp1	110	H110Y	Cat	Tat	11	11	A.2.5	0.005489
ORF1ab/nsp1	110	H110H	caT	caC	11	11	AY.102	0.000292
ORF1ab/nsp1	110	H110R	cAt	cGt	10	11	AY.44	0.000061
ORF1ab/nsp1	110	H110R	cAT	cGC	1	11	AY.44	0.000006
ORF1ab/nsp1	110	H110Y	Cat	Tat	11	11	AY.75.1	0.001983
ORF1ab/nsp1	110	H110Y	Cat	Tat	11	11	B.1.582	0.005397
ORF1ab/nsp1	110	H110Y	Cat	Tat	10	10	AY.113	0.001424
ORF1ab/nsp1	110	H110Y	Cat	Tat	10	10	B.1.1.37	0.001929
ORF1ab/nsp1	110	H110Y	Cat	Tat	10	10	B.1.177.81	0.001893
ORF1ab/nsp1	110	H110Y	Cat	Tat	10	10	B.1.474	0.019011
ORF1ab/nsp1	110	H110N	Cat	Aat	9	9	AY.101	0.004414
ORF1ab/nsp1	110	H110H	caT	caC	9	9	AY.4	0.000014
ORF1ab/nsp1	110	H110Y	Cat	Tat	9	9	B.1.399	0.017408
ORF1ab/nsp1	110	H110Y	Cat	Tat	9	9	B.1.400	0.003861
ORF1ab/nsp1	110	H110Y	Cat	Tat	9	9	B.1.576	0.00816
ORF1ab/nsp1	110	H110Y	Cat	Tat	9	9	B.1.595	0.002349
ORF1ab/nsp1	110	H110R	cAt	cGt	9	9	B.1.637	0.000658
ORF1ab/nsp1	110	H110P	cAt	cCt	8	8	All	0.000002
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	AY.46	0.000833
ORF1ab/nsp1	110	H110H	caT	caC	8	8	AY.61	0.000838
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	AY.62	0.003486
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	AY.99.2	0.000737
ORF1ab/nsp1	110	H110H	caT	caC	8	8	B.1	0.000073
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.1.265	0.025237
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.1.28	0.00249
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.1.44	0.019277
ORF1ab/nsp1	110	H110D	Cat	Gat	8	8	B.1.1.7	0.000007
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.1.70	0.002729
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.240	0.001725
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.258	0.000532
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.36	0.001167
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.596	0.000697
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	B.1.629	0.106667
ORF1ab/nsp1	110	H110Y	Cat	Tat	8	8	R.1	0.00072
ORF1ab/nsp1	110	H110R	cAt	cGt	7	7	AY.103	0.000043
ORF1ab/nsp1	110	H110Y	Cat	Tat	7	7	AY.4.3	0.005892
ORF1ab/nsp1	110	H110Y	Cat	Tat	7	7	AY.5.4	0.001937
ORF1ab/nsp1	110	H110R	cAt	cGt	7	7	AY.6	0.000288
ORF1ab/nsp1	110	H110Y	Cat	Tat	7	7	AY.61	0.000733
ORF1ab/nsp1	110	H110Y	Cat	Tat	7	7	AY.69	0.001307
ORF1ab/nsp1	110	H110Y	Cat	Tat	7	7	AY.98	0.000553
ORF1ab/nsp1	110	H110L	cAt	cTt	7	7	B.1.1.7	0.000006
ORF1ab/nsp1	110	H110Y	Cat	Tat	7	7	B.1.451	0.057377
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.117	0.000507
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.121	0.000812
ORF1ab/nsp1	110	H110H	caT	caC	6	6	AY.23	0.000418
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.36	0.000889
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.54	0.000572
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.59	0.003178
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.65	0.003198
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.9	0.000406
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.9.2	0.00022
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.90	0.004107
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	AY.94	0.002656
ORF1ab/nsp1	110	H110Q	caT	caA	6	6	AY.98	0.000474
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	B	0.000767
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	B.1.234	0.000792
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	B.1.36.29	0.003104
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	B.40	0.002186
ORF1ab/nsp1	110	H110Y	Cat	Tat	6	6	N.5	0.010601
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	A	0.001935
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	AY.108	0.005513
ORF1ab/nsp1	110	H110del	CAT	---	5	5	AY.4	0.000008
ORF1ab/nsp1	110	H110L	cAt	cTt	5	5	AY.4	0.000008
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	AY.5.3	0.001687
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	AY.57	0.003281
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	AY.68	0.001369
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	AY.78	0.007704
ORF1ab/nsp1	110	H110H	caT	caC	5	5	AY.98.1	0.000242
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	AY.99	0.005247
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	AY.99.1	0.007764
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.1.25	0.002843
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.1.284	0.000537
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.1.298	0.00431
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.1.306	0.002192
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.1.318	0.001509
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.1.39	0.002548
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.1.434	0.001743
ORF1ab/nsp1	110	H110del	CAT	---	5	5	B.1.1.7	0.000004
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.177.7	0.000824
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.177.86	0.000917
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	B.1.525	0.000566
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	P.1.12	0.00242
ORF1ab/nsp1	110	H110Y	Cat	Tat	5	5	Q.3	0.000725
ORF1ab/nsp1	110	H110del1	Cat	-at	2	4	All	0
ORF1ab/nsp1	110	H110del1	CaT	-aC	1	4	All	0
ORF1ab/nsp1	110	H110del1	CAT	T-C	1	4	All	0
ORF1ab/nsp1	110	H110D	Cat	Gat	4	4	AY.103	0.000025
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	AY.105	0.002572
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	AY.116.1	0.001246
ORF1ab/nsp1	110	H110H	caT	caC	4	4	AY.3	0.00004
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	AY.35	0.000932
ORF1ab/nsp1	110	H110D	Cat	Gat	4	4	AY.4	0.000006
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	AY.4.5	0.00043
ORF1ab/nsp1	110	H110D	Cat	Gat	4	4	AY.43	0.000018
ORF1ab/nsp1	110	H110Q	caT	caA	3	4	AY.43	0.000013
ORF1ab/nsp1	110	H110Q	caT	caG	1	4	AY.43	0.000004
ORF1ab/nsp1	110	H110Q	caT	caA	4	4	AY.44	0.000024
ORF1ab/nsp1	110	H110Q	caT	caA	3	4	B.1	0.000027
ORF1ab/nsp1	110	H110Q	caT	caG	1	4	B.1	0.000009
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.1.1	0.001307
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.1.312	0.007648
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.1.326	0.007042
ORF1ab/nsp1	110	H110del	CAT	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.1.347	0.072727
ORF1ab/nsp1	110	H110del	CAT	---	4	4	B.1.1.348	0.003185
ORF1ab/nsp1	110	H110H	caT	caC	4	4	B.1.1.464	0.005891
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.1.54	0.012085
ORF1ab/nsp1	110	H110H	caT	caC	4	4	B.1.1.70	0.001364
ORF1ab/nsp1	110	H110Q	caT	caA	4	4	B.1.177.21	0.000306
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.177.44	0.002076
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.232	0.002149
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.239	0.004884
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.258.17	0.000416
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.265	0.005083
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.367	0.00317
ORF1ab/nsp1	110	H110H	caT	caC	4	4	B.1.404	0.005208
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	B.1.469	0.01444
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	D.2	0.0003
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	P.1.7	0.001277
ORF1ab/nsp1	110	H110Y	Cat	Tat	4	4	P.2	0.000747
ORF1ab/nsp1	110	H110H	caT	caC	3	3	AY.103	0.000019
ORF1ab/nsp1	110	H110R	cAt	cGt	3	3	AY.118	0.000188
ORF1ab/nsp1	110	H110R	cAt	cGt	3	3	AY.20	0.000117
ORF1ab/nsp1	110	H110H	caT	caC	3	3	AY.25	0.000018
ORF1ab/nsp1	110	H110L	cAt	cTt	3	3	AY.25	0.000018
ORF1ab/nsp1	110	H110H	caT	caC	3	3	AY.33	0.0002
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	AY.38	0.001498
ORF1ab/nsp1	110	H110Q	caT	caA	2	3	AY.4	0.000003
ORF1ab/nsp1	110	H110Q	caT	caG	1	3	AY.4	0.000002
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	AY.4.2.1	0.000447
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	AY.41	0.000882
ORF1ab/nsp1	110	H110del	CAT	---	3	3	AY.43	0.000013
ORF1ab/nsp1	110	H110H	caT	caC	3	3	AY.47	0.000093
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	AY.52	0.002443
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	AY.60	0.002814
ORF1ab/nsp1	110	H110H	caT	caC	3	3	AY.75	0.000168
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	AY.79	0.003632
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	AY.81	0.005976
ORF1ab/nsp1	110	H110R	cAt	cGt	3	3	B.1	0.000027
ORF1ab/nsp1	110	H110R	cAt	cGt	3	3	B.1.1	0.000054
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.1.216	0.002671
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.1.388	0.136364
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.1.485	0.05
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.1.50	0.002037
ORF1ab/nsp1	110	H110N	Cat	Aat	3	3	B.1.1.7	0.000003
ORF1ab/nsp1	110	H110Q	caT	caA	2	3	B.1.1.7	0.000002
ORF1ab/nsp1	110	H110Q	caT	caG	1	3	B.1.1.7	0.000001
ORF1ab/nsp1	110	H110del	CAT	---	3	3	B.1.2	0.000026
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.349	0.002144
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.36.22	0.003623
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.382	0.026786
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.398	0.008929
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.409	0.002344
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.438.1	0.000322
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.450	0.034091
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.462	0.021739
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.570	0.008824
ORF1ab/nsp1	110	H110H	caT	caC	3	3	B.1.595	0.000783
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.604	0.051724
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	B.1.628	0.001057
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	C.35	0.002322
ORF1ab/nsp1	110	H110Q	caT	caA	3	3	P.1	0.000047
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	P.1.17	0.000485
ORF1ab/nsp1	110	H110Q	caT	caA	3	3	P.2	0.00056
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	Q.4	0.001364
ORF1ab/nsp1	110	H110Y	Cat	Tat	3	3	Q.8	0.000495
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2		0.111111
ORF1ab/nsp1	110	H110del2	cAT	c--	1	2	All	0
ORF1ab/nsp1	110	H110del2	CAt	--t	1	2	All	0
ORF1ab/nsp1	110	H110H	caT	caC	2	2	AY.116	0.000574
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.16	0.000759
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.19	0.002281
ORF1ab/nsp1	110	H110del	CAT	---	2	2	AY.25	0.000012
ORF1ab/nsp1	110	H110D	Cat	Gat	2	2	AY.26	0.000057
ORF1ab/nsp1	110	H110R	cAt	cGt	2	2	AY.26	0.000057
ORF1ab/nsp1	110	H110L	cAt	cTt	2	2	AY.29	0.000032
ORF1ab/nsp1	110	H110R	cAt	cGt	2	2	AY.3	0.00002
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.32	0.001065
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.39.2	0.003082
ORF1ab/nsp1	110	H110H	caT	caC	2	2	AY.43	0.000009
ORF1ab/nsp1	110	H110P	cAt	cCt	2	2	AY.46.4	0.000329
ORF1ab/nsp1	110	H110H	caT	caC	2	2	AY.5	0.000041
ORF1ab/nsp1	110	H110Q	caT	caG	2	2	AY.6	0.000082
ORF1ab/nsp1	110	H110R	cAt	cGt	2	2	AY.61	0.00021
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.7	0.000392
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.70	0.000417
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.72	0.002721
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.75	0.000112
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.82	0.002714
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.84	0.000875
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.86	0.00166
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.9.1	0.000167
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	AY.93	0.000546
ORF1ab/nsp1	110	H110R	cAt	cGt	2	2	AY.94	0.000885
ORF1ab/nsp1	110	H110H	caT	caC	2	2	AY.98	0.000158
ORF1ab/nsp1	110	H110D	Cat	Gat	2	2	AZ.1	0.001735
ORF1ab/nsp1	110	H110N	Cat	Aat	2	2	B.1	0.000018
ORF1ab/nsp1	110	H110Q	caT	caA	2	2	B.1.1	0.000036
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.176	0.000879
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.192	0.004619
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.231	0.006192
ORF1ab/nsp1	110	H110R	cAt	cGt	2	2	B.1.1.25	0.001137
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.316	0.00185
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.317	0.000823
ORF1ab/nsp1	110	H110H	caT	caC	2	2	B.1.1.317	0.000823
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.33	0.000842
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.362	0.011236
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.392	0.105263
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.1.526	0.007092
ORF1ab/nsp1	110	H110H	caT	caC	2	2	B.1.160	0.000062
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.160.10	0.016129
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.160.25	0.022222
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.160.30	0.005952
ORF1ab/nsp1	110	H110del	CAT	---	2	2	B.1.177.4	0.000422
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.177.4	0.000422
ORF1ab/nsp1	110	H110del	CAT	---	2	2	B.1.177.54	0.001213
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.177.73	0.001133
ORF1ab/nsp1	110	H110P	cAt	cCt	2	2	B.1.2	0.000018
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.214	0.007326
ORF1ab/nsp1	110	H110L	cAt	cTt	2	2	B.1.258	0.000133
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.258.3	0.00335
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.311	0.000549
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.313	0.013158
ORF1ab/nsp1	110	H110H	caT	caC	2	2	B.1.36	0.000292
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.36.16	0.002849
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.36.17	0.000988
ORF1ab/nsp1	110	H110R	cAt	cGt	2	2	B.1.409	0.001563
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.448	0.005249
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.459	0.008163
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.471	0.005464
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.480	0.004975
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.497	0.00063
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.505	0.008772
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.509	0.001732
ORF1ab/nsp1	110	H110H	caT	caC	2	2	B.1.526	0.000047
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.562	0.037037
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.577	0.001375
ORF1ab/nsp1	110	H110R	cAt	cGt	2	2	B.1.596	0.000174
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.609	0.000959
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.78	0.017094
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.1.9	0.012346
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	B.6.6	0.001778
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	C.1	0.004785
ORF1ab/nsp1	110	H110L	cAt	cTt	2	2	C.1.2	0.008511
ORF1ab/nsp1	110	H110R	cAt	cGt	2	2	C.23	0.011628
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	C.36	0.001821
ORF1ab/nsp1	110	H110del	CAT	---	2	2	N.4	0.008511
ORF1ab/nsp1	110	H110del	CAT	---	2	2	N.6	0.014184
ORF1ab/nsp1	110	H110D	Cat	Gat	2	2	P.1.7	0.000639
ORF1ab/nsp1	110	H110del	CAT	---	2	2	P.2	0.000373
ORF1ab/nsp1	110	H110H	caT	caC	2	2	P.2	0.000373
ORF1ab/nsp1	110	H110Y	Cat	Tat	2	2	U.3	0.007722
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1		0.055556
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1		0.055556
ORF1ab/nsp1	110	H110del	CAT	---	1	1	A	0.000387
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	A.2.2	0.001689
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	A.2.5.1	0.004808
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	A.3	0.002096
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	A.5	0.001923
ORF1ab/nsp1	110	H110G	CAT	GGC	1	1	All	0
ORF1ab/nsp1	110	H110T	CAT	ACG	1	1	All	0
ORF1ab/nsp1	110	H110F	CAt	TTt	1	1	All	0
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.1	0.000396
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	AY.102	0.000027
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	AY.102	0.000027
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1	AY.103	0.000006
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.104	0.001984
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.106	0.000335
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.109	0.00074
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	AY.111	0.000183
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	AY.111	0.000183
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.111	0.000183
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.114	0.000231
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.116	0.000287
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.116	0.000287
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.12	0.000316
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.12	0.000316
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.120	0.000037
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.120.2.1	0.000498
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.120.2.1	0.000498
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.16.1	0.00047
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.20	0.000039
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.21	0.001898
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.24	0.000431
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	AY.24	0.000431
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	AY.25	0.000006
ORF1ab/nsp1	110	H110del1	Cat	-at	1	1	AY.25	0.000006
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	AY.26	0.000028
ORF1ab/nsp1	110	H110Q	caT	caG	1	1	AY.26	0.000028
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.26	0.000028
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.29	0.000016
ORF1ab/nsp1	110	H110Q	caT	caG	1	1	AY.3	0.00001
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	AY.3.1	0.000085
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.30	0.000396
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.32	0.000532
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	AY.33	0.000067
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.34.1	0.00051
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.37	0.000316
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.38	0.000499
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	AY.39	0.000025
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.39	0.000025
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.4.1	0.000737
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	AY.4.2	0.000022
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	AY.4.2	0.000022
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.4.4	0.000409
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.4.4	0.000409
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	AY.43	0.000004
ORF1ab/nsp1	110	H110G	CAT	GGC	1	1	AY.44	0.000006
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	AY.44	0.000006
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1	AY.45	0.000122
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	AY.46	0.000104
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.46.1	0.001027
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	AY.46.2	0.000635
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.46.3	0.000934
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.46.5	0.000198
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	AY.47	0.000031
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.51	0.000909
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.54	0.000095
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.58	0.000907
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.64	0.000595
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.65	0.000533
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	AY.69	0.000187
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	AY.71	0.000475
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.74	0.000116
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.75.1	0.00018
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	AY.75.1	0.00018
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.77	0.001127
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.79	0.001211
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.87	0.000833
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	AY.9	0.000068
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	AY.9	0.000068
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	AY.9.1	0.000084
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.9.1	0.000084
ORF1ab/nsp1	110	H110H	caT	caC	1	1	AY.92	0.000287
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.92	0.000287
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AY.95	0.000761
ORF1ab/nsp1	110	H110del	CAT	---	1	1	AY.95	0.000761
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	AY.99.2	0.000092
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AZ.1	0.000867
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	AZ.2	0.000821
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	B	0.000128
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B	0.000128
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1	0.000009
ORF1ab/nsp1	110	H110P	cAt	cCt	1	1	B.1	0.000009
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	B.1.1	0.000018
ORF1ab/nsp1	110	H110F	CAt	TTt	1	1	B.1.1	0.000018
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.1	0.000018
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.10	0.001115
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.115	0.008929
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.153	0.001095
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.198	0.001468
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.207	0.001182
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	B.1.1.25	0.000569
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.261	0.008621
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.263	0.001558
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.269	0.001353
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.273	0.006757
ORF1ab/nsp1	110	H110Q	caT	caG	1	1	B.1.1.291	0.000742
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.294	0.001266
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.301	0.001179
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.303	0.002762
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.1.304	0.002809
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.310	0.015152
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.311	0.000358
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.342	0.0625
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.351	0.002793
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.369	0.000446
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.372	0.000689
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.385	0.004464
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.397	0.002252
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.409	0.002833
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.416	0.000905
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.5	0.008333
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.512	0.028571
ORF1ab/nsp1	110	H110H	caT	caC	1	1	B.1.1.523	0.001563
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.1.63	0.000386
ORF1ab/nsp1	110	H110T	CAT	ACG	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	B.1.110.3	0.000718
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.111	0.001175
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.126	0.001276
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.160.14	0.002119
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.160.16	0.000929
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.160.17	0.001701
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.160.28	0.002924
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	B.1.160.30	0.002976
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.160.31	0.008065
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.160.8	0.001289
ORF1ab/nsp1	110	H110P	cAt	cCt	1	1	B.1.177	0.000013
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.177	0.000013
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.177	0.000013
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	B.1.177	0.000013
ORF1ab/nsp1	110	H110Q	caT	caG	1	1	B.1.177	0.000013
ORF1ab/nsp1	110	H110del2	cAT	c--	1	1	B.1.177	0.000013
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.12	0.000152
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.16	0.000664
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.17	0.000821
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.23	0.003236
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.29	0.066667
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.31	0.011494
ORF1ab/nsp1	110	H110H	caT	caC	1	1	B.1.177.32	0.00135
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.177.33	0.001645
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.40	0.005155
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.41	0.0025
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1	B.1.177.45	0.000381
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.45	0.000381
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.47	0.012987
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.50	0.004695
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.52	0.001757
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.53	0.002392
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.62	0.001192
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.63	0.002703
ORF1ab/nsp1	110	H110H	caT	caC	1	1	B.1.177.65	0.000665
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.75	0.001041
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.76	0.002494
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.8	0.000752
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.82	0.000477
ORF1ab/nsp1	110	H110H	caT	caC	1	1	B.1.177.86	0.000183
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.177.9	0.001332
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.179	0.003759
ORF1ab/nsp1	110	H110H	caT	caC	1	1	B.1.2	0.000009
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.2	0.000009
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	B.1.2	0.000009
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.210	0.002132
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.211	0.025
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.214.2	0.0006
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.221.2	0.004016
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.232	0.000537
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.236	0.002053
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.241	0.000812
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	B.1.243	0.00007
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.247	0.014925
ORF1ab/nsp1	110	H110del1	CaT	-aC	1	1	B.1.258	0.000067
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	B.1.258	0.000067
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.258.14	0.00098
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.279	0.000514
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.308	0.034483
ORF1ab/nsp1	110	H110H	caT	caC	1	1	B.1.311	0.000275
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.319	0.003049
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.324	0.001605
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.329	0.000608
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.332	0.003497
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.337	0.005587
ORF1ab/nsp1	110	H110H	caT	caC	1	1	B.1.349	0.000715
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1	B.1.351	0.00003
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.351	0.00003
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.359	0.022727
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.36	0.000146
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1	B.1.36	0.000146
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.36	0.000146
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.36.18	0.00042
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.36.29	0.000517
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.36.35	0.002604
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.36.36	0.000602
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1	B.1.387	0.04
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.396	0.000706
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.415.1	0.007576
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.416	0.001269
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.422	0.000812
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.427	0.00005
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.428	0.00102
ORF1ab/nsp1	110	H110del2	CAt	--t	1	1	B.1.429	0.000024
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.429	0.000024
ORF1ab/nsp1	110	H110del	CAT	---	1	1	B.1.429	0.000024
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	B.1.429	0.000024
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	B.1.429	0.000024
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.436	0.001029
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.468	0.005714
ORF1ab/nsp1	110	H110P	cAt	cCt	1	1	B.1.517	0.000427
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	B.1.526	0.000024
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.537	0.02
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.538	0.008065
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.547	0.02439
ORF1ab/nsp1	110	H110del1	Cat	-at	1	1	B.1.551	0.00129
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.556	0.007519
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.561	0.000397
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.565	0.00081
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.572	0.025
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.578	0.017857
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.589	0.007576
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	B.1.596	0.000087
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	B.1.596	0.000087
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.596.1	0.009346
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.599	0.00365
ORF1ab/nsp1	110	H110del1	CAT	T-C	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	110	H110D	Cat	Gat	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	B.1.621	0.000089
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.623	0.000536
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.1.627	0.00202
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.3	0.000831
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.4	0.002208
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	B.61	0.005747
ORF1ab/nsp1	110	H110del	CAT	---	1	1	C.17	0.055556
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	C.2	0.016129
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	C.23	0.005814
ORF1ab/nsp1	110	H110del	CAT	---	1	1	C.35	0.000774
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	C.36.3	0.000567
ORF1ab/nsp1	110	H110N	Cat	Aat	1	1	D.2	0.000075
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	K.3	0.006173
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	N.4	0.004255
ORF1ab/nsp1	110	H110R	cAt	cGt	1	1	P.1	0.000016
ORF1ab/nsp1	110	H110L	cAt	cTt	1	1	P.1	0.000016
ORF1ab/nsp1	110	H110Q	caT	caA	1	1	P.1.12	0.000484
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	P.1.2	0.001156
ORF1ab/nsp1	110	H110H	caT	caC	1	1	P.1.6	0.001946
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	P.1.9	0.004808
ORF1ab/nsp1	110	H110H	caT	caC	1	1	P.3	0.001595
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	P.3	0.001595
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	P.6	0.003145
ORF1ab/nsp1	110	H110Y	Cat	Tat	1	1	Q.7	0.001111
ORF1ab/nsp1	110	H110P	cAt	cCt	1	1	Q.8	0.000165
ORF1ab/nsp1	110	H110H	caT	caC	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.