CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 110 | H110Y | H110Y | nonsyn | Cat | Tat | 17109 | 17108 | 0.999942 | 593-595 |
ORF1ab/nsp1 | 110 | H110Y | H110Y | nonsyn | CaT | TaC | 17109 | 1 | 0.0000584488 | 593-595 |
ORF1ab/nsp1 | 110 | H110R | H110R | nonsyn | cAt | cGt | 807 | 806 | 0.998761 | 593-595 |
ORF1ab/nsp1 | 110 | H110R | H110R | nonsyn | cAT | cGC | 807 | 1 | 0.00123916 | 593-595 |
ORF1ab/nsp1 | 110 | H110H | H110H | syn | caT | caC | 283 | 283 | 1 | 593-595 |
ORF1ab/nsp1 | 110 | H110del | H110del | del | CAT | --- | 58 | 58 | 1 | 593-595 |
ORF1ab/nsp1 | 110 | H110Q | H110Q | nonsyn | caT | caA | 54 | 44 | 0.814815 | 593-595 |
ORF1ab/nsp1 | 110 | H110Q | H110Q | nonsyn | caT | caG | 54 | 10 | 0.185185 | 593-595 |
ORF1ab/nsp1 | 110 | H110L | H110L | nonsyn | cAt | cTt | 43 | 43 | 1 | 593-595 |
ORF1ab/nsp1 | 110 | H110D | H110D | nonsyn | Cat | Gat | 38 | 38 | 1 | 593-595 |
ORF1ab/nsp1 | 110 | H110N | H110N | nonsyn | Cat | Aat | 24 | 24 | 1 | 593-595 |
ORF1ab/nsp1 | 110 | H110P | H110P | nonsyn | cAt | cCt | 8 | 8 | 1 | 593-595 |
ORF1ab/nsp1 | 110 | H110del1 | H110del1 | del | Cat | -at | 4 | 2 | 0.5 | 593-595 |
ORF1ab/nsp1 | 110 | H110del1 | H110del1 | del | CaT | -aC | 4 | 1 | 0.25 | 593-595 |
ORF1ab/nsp1 | 110 | H110del1 | H110del1 | del | CAT | T-C | 4 | 1 | 0.25 | 593-595 |
ORF1ab/nsp1 | 110 | H110del2 | H110del2 | del | cAT | c-- | 2 | 1 | 0.5 | 593-595 |
ORF1ab/nsp1 | 110 | H110del2 | H110del2 | del | CAt | --t | 2 | 1 | 0.5 | 593-595 |
ORF1ab/nsp1 | 110 | H110F | H110F | nonsyn | CAt | TTt | 1 | 1 | 1 | 593-595 |
ORF1ab/nsp1 | 110 | H110T | H110T | nonsyn | CAT | ACG | 1 | 1 | 1 | 593-595 |
ORF1ab/nsp1 | 110 | H110G | H110G | nonsyn | CAT | GGC | 1 | 1 | 1 | 593-595 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 17108 | 17109 | All | 0.003272 |
ORF1ab/nsp1 | 110 | H110Y | CaT | TaC | 1 | 17109 | All | 0 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4872 | 4872 | B.1.1.7 | 0.004362 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1371 | 1372 | AY.26 | 0.038813 |
ORF1ab/nsp1 | 110 | H110Y | CaT | TaC | 1 | 1372 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1294 | 1294 | B.1.429 | 0.030446 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1202 | 1202 | B.1.177.21 | 0.091917 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 806 | 807 | All | 0.000154 |
ORF1ab/nsp1 | 110 | H110R | cAT | cGC | 1 | 807 | All | 0 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 613 | 613 | AY.4 | 0.000954 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 556 | 556 | B.1.617.2 | 0.002094 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 482 | 482 | AY.39.1 | 0.019094 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 455 | 455 | B.1.466.2 | 0.178013 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 434 | 434 | B.1.177 | 0.005715 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 411 | 411 | B.1.177.5 | 0.510559 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 341 | 341 | B.1.1.214 | 0.018911 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 330 | 330 | AY.3 | 0.003282 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 283 | 283 | All | 0.000054 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 262 | 262 | AY.25 | 0.001576 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 258 | 258 | P.1 | 0.004065 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 257 | 257 | AY.4 | 0.0004 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 255 | 255 | AY.43 | 0.00113 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 215 | 215 | B.1.2 | 0.001893 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 193 | 193 | AY.103 | 0.001198 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 169 | 169 | AY.10 | 0.08956 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 150 | 150 | B.1 | 0.001374 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 147 | 147 | B.1.1 | 0.002667 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 127 | 127 | B.1.421 | 0.947761 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 126 | 126 | AY.5 | 0.002602 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 125 | 125 | AY.44 | 0.000761 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 118 | 118 | B.1.177.87 | 0.085881 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 107 | 107 | B.1.214.4 | 0.972727 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 99 | 99 | B.1.160 | 0.003088 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 92 | 92 | B.1.1.222 | 0.018768 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 89 | 89 | B.1.526 | 0.002092 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 83 | 83 | AY.73 | 0.055223 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 77 | 77 | B.1.351 | 0.002289 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 74 | 74 | B.1.1.218 | 0.569231 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 68 | 68 | B.1.427 | 0.003434 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 68 | 68 | B.1.622 | 0.883117 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 65 | 65 | AY.27 | 0.004207 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 64 | 64 | AY.30 | 0.025326 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 64 | 64 | AY.39 | 0.001582 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 62 | 62 | P.1.15 | 0.014405 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 58 | 58 | All | 0.000011 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 56 | 56 | B.1.36.20 | 0.949153 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 44 | 54 | All | 0.000008 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 10 | 54 | All | 0.000002 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 54 | 54 | AY.102 | 0.001432 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 54 | 54 | B.1.221 | 0.003836 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 54 | 54 | B.1.621 | 0.00478 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 53 | 53 | B.1.1.522 | 0.913793 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 52 | 52 | AY.29 | 0.00082 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 50 | 50 | AD.2 | 0.010948 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 47 | 47 | AY.111 | 0.008608 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 46 | 46 | AY.20 | 0.001788 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 43 | 43 | All | 0.000008 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 41 | 41 | AY.4.2 | 0.000889 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 41 | 41 | B.1.1.7 | 0.000037 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 39 | 39 | AY.3.1 | 0.003325 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 38 | 38 | All | 0.000007 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 38 | 38 | AY.98.1 | 0.00184 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 35 | 35 | AY.100 | 0.00161 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 33 | 33 | B.1.243 | 0.002296 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 30 | 30 | AY.42 | 0.001207 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 28 | 28 | P.1.16 | 0.010475 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 27 | 27 | AY.46.6 | 0.00195 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 27 | 27 | B.1.1.519 | 0.001072 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 27 | 27 | B.1.369 | 0.007701 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 25 | 25 | AY.119 | 0.000883 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 24 | 24 | All | 0.000005 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 23 | 23 | AY.33 | 0.001536 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 22 | 22 | AY.46.6 | 0.001589 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 21 | 21 | B.1.575 | 0.006371 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 20 | 20 | AY.120 | 0.000744 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 20 | 20 | AY.39.1 | 0.000792 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 20 | 20 | B.1.617.1 | 0.002579 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 19 | 19 | AY.119 | 0.000671 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 19 | 19 | AY.14 | 0.001672 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 18 | 18 | AY.118 | 0.001128 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 18 | 18 | Q.1 | 0.002274 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 17 | 17 | AY.45 | 0.002069 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 17 | 17 | AY.47 | 0.000529 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 16 | 16 | AY.6 | 0.000658 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 16 | 16 | B.1.1.387 | 0.941176 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 16 | 16 | P.1.14 | 0.000765 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 13 | 13 | AY.34 | 0.001261 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 13 | 13 | B.1.1.214 | 0.000721 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 13 | 13 | B.1.1.220 | 0.024164 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 12 | 12 | AY.85 | 0.005126 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 12 | 12 | B.1.160.26 | 0.029056 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 12 | 12 | B.1.160.29 | 0.050633 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 12 | 12 | B.1.375 | 0.009836 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 12 | 12 | B.1.564 | 0.005111 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 12 | 12 | B.1.637 | 0.000877 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 11 | 11 | A.2.5 | 0.005489 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 10 | 11 | AY.44 | 0.000061 |
ORF1ab/nsp1 | 110 | H110R | cAT | cGC | 1 | 11 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 11 | 11 | AY.75.1 | 0.001983 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 11 | 11 | B.1.582 | 0.005397 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 10 | 10 | B.1.1.37 | 0.001929 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 10 | 10 | B.1.177.81 | 0.001893 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 10 | 10 | B.1.474 | 0.019011 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 9 | 9 | AY.101 | 0.004414 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 9 | 9 | B.1.399 | 0.017408 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 9 | 9 | B.1.400 | 0.003861 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 9 | 9 | B.1.576 | 0.00816 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 9 | 9 | B.1.595 | 0.002349 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp1 | 110 | H110P | cAt | cCt | 8 | 8 | All | 0.000002 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | AY.62 | 0.003486 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.1.265 | 0.025237 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.1.44 | 0.019277 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.1.70 | 0.002729 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | B.1.629 | 0.106667 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 7 | 7 | AY.4.3 | 0.005892 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 7 | 7 | AY.5.4 | 0.001937 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 7 | 7 | AY.69 | 0.001307 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 7 | 7 | B.1.451 | 0.057377 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.65 | 0.003198 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.90 | 0.004107 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | AY.94 | 0.002656 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | B | 0.000767 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | B.40 | 0.002186 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 6 | 6 | N.5 | 0.010601 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | A | 0.001935 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | AY.57 | 0.003281 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | AY.78 | 0.007704 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | AY.99 | 0.005247 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | AY.99.1 | 0.007764 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.1.298 | 0.00431 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 5 | 5 | Q.3 | 0.000725 |
ORF1ab/nsp1 | 110 | H110del1 | Cat | -at | 2 | 4 | All | 0 |
ORF1ab/nsp1 | 110 | H110del1 | CaT | -aC | 1 | 4 | All | 0 |
ORF1ab/nsp1 | 110 | H110del1 | CAT | T-C | 1 | 4 | All | 0 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.1.312 | 0.007648 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.1.326 | 0.007042 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.1.347 | 0.072727 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.1.54 | 0.012085 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.232 | 0.002149 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 4 | 4 | B.1.404 | 0.005208 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | AY.60 | 0.002814 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | AY.81 | 0.005976 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.1.388 | 0.136364 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.1.485 | 0.05 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.36.22 | 0.003623 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.382 | 0.026786 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.398 | 0.008929 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.450 | 0.034091 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.570 | 0.008824 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.604 | 0.051724 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 110 | H110del2 | cAT | c-- | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 110 | H110del2 | CAt | --t | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 110 | H110P | cAt | cCt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.392 | 0.105263 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.160.25 | 0.022222 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.160.30 | 0.005952 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp1 | 110 | H110P | cAt | cCt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.313 | 0.013158 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.562 | 0.037037 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.78 | 0.017094 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.1.9 | 0.012346 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 2 | 2 | C.23 | 0.011628 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 2 | 2 | U.3 | 0.007722 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp1 | 110 | H110G | CAT | GGC | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 110 | H110T | CAT | ACG | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 110 | H110F | CAt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 110 | H110del1 | Cat | -at | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 110 | H110G | CAT | GGC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 110 | H110P | cAt | cCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 110 | H110F | CAt | TTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.115 | 0.008929 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.310 | 0.015152 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.342 | 0.0625 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 110 | H110T | CAT | ACG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp1 | 110 | H110P | cAt | cCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 110 | H110Q | caT | caG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 110 | H110del2 | cAT | c-- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.29 | 0.066667 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.47 | 0.012987 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp1 | 110 | H110del1 | CaT | -aC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.308 | 0.034483 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.359 | 0.022727 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | B.1.387 | 0.04 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp1 | 110 | H110del2 | CAt | --t | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp1 | 110 | H110P | cAt | cCt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp1 | 110 | H110del1 | Cat | -at | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.572 | 0.025 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp1 | 110 | H110del1 | CAT | T-C | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 110 | H110D | Cat | Gat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp1 | 110 | H110del | CAT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp1 | 110 | H110N | Cat | Aat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | K.3 | 0.006173 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp1 | 110 | H110R | cAt | cGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 110 | H110L | cAt | cTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 110 | H110Q | caT | caA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp1 | 110 | H110Y | Cat | Tat | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp1 | 110 | H110P | cAt | cCt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp1 | 110 | H110H | caT | caC | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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