CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 109 & Codon = cTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1109P109LP109LnonsyncCtcTt65640.984615590-592

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1109P109LcCtcTt6465All0.000012
ORF1ab/nsp1109P109LcCtcTt2323AY.40.000036
ORF1ab/nsp1109P109LcCtcTt55B.1.1.70.000004
ORF1ab/nsp1109P109LcCtcTt44AY.440.000024
ORF1ab/nsp1109P109LcCtcTt44B.1.617.20.000015
ORF1ab/nsp1109P109LcCtcTt23B.1.10.000036
ORF1ab/nsp1109P109LcCtcTt220.111111
ORF1ab/nsp1109P109LcCtcTt22AY.250.000012
ORF1ab/nsp1109P109LcCtcTt22AY.390.000049
ORF1ab/nsp1109P109LcCtcTt22AY.430.000009
ORF1ab/nsp1109P109LcCtcTt22B.1.5950.000522
ORF1ab/nsp1109P109LcCtcTt22D.20.00015
ORF1ab/nsp1109P109LcCtcTt11AY.1000.000046
ORF1ab/nsp1109P109LcCtcTt11AY.1060.000335
ORF1ab/nsp1109P109LcCtcTt11AY.1190.000035
ORF1ab/nsp1109P109LcCtcTt11AY.270.000065
ORF1ab/nsp1109P109LcCtcTt11AY.30.00001
ORF1ab/nsp1109P109LcCtcTt11AY.4.20.000022
ORF1ab/nsp1109P109LcCtcTt11AY.470.000031
ORF1ab/nsp1109P109LcCtcTt11AY.540.000095
ORF1ab/nsp1109P109LcCtcTt11AY.560.001605
ORF1ab/nsp1109P109LcCtcTt11B.1.1.5190.00004
ORF1ab/nsp1109P109LcCtcTt11B.1.177.120.000152
ORF1ab/nsp1109P109LcCtcTt11B.1.20.000009
ORF1ab/nsp1109P109LcCtcTt11B.1.5960.000087
ORF1ab/nsp1109P109LcCtcTt11P.10.000016