CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 109

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1109P109PP109PsynccTccC353623620.667986590-592
ORF1ab/nsp1109P109PP109PsynccTccA353611190.316459590-592
ORF1ab/nsp1109P109PP109PsynccTccG3536550.0155543590-592
ORF1ab/nsp1109P109SP109SnonsynCctTct4224221590-592
ORF1ab/nsp1109P109HP109HnonsyncCtcAt2122121590-592
ORF1ab/nsp1109P109LP109LnonsyncCtcTt65640.984615590-592
ORF1ab/nsp1109P109LP109LnonsyncCTcTC6510.0153846590-592
ORF1ab/nsp1109P109delP109deldelCCT---59591590-592
ORF1ab/nsp1109P109TP109TnonsynCctAct19191590-592
ORF1ab/nsp1109P109RP109RnonsyncCtcGt441590-592
ORF1ab/nsp1109P109del1P109del1delccTcc-331590-592
ORF1ab/nsp1109P109VP109VnonsynCCtGTt331590-592
ORF1ab/nsp1109P109CP109CnonsynCCtTGt320.666667590-592
ORF1ab/nsp1109P109CP109CnonsynCCTTGC310.333333590-592
ORF1ab/nsp1109P109AP109AnonsynCctGct221590-592
ORF1ab/nsp1109P109del2P109del2delCCt--t111590-592

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1109P109PccTccC23623536All0.000452
ORF1ab/nsp1109P109PccTccA11193536All0.000214
ORF1ab/nsp1109P109PccTccG553536All0.000011
ORF1ab/nsp1109P109PccTccC11971197P.10.018858
ORF1ab/nsp1109P109PccTccA10321040AY.30.010265
ORF1ab/nsp1109P109PccTccC61040AY.30.00006
ORF1ab/nsp1109P109PccTccG21040AY.30.00002
ORF1ab/nsp1109P109SCctTct422422All0.000081
ORF1ab/nsp1109P109HcCtcAt212212All0.000041
ORF1ab/nsp1109P109PccTccC209209P.1.81
ORF1ab/nsp1109P109SCctTct206206AY.40.000321
ORF1ab/nsp1109P109PccTccC202202P.1.90.971154
ORF1ab/nsp1109P109HcCtcAt180180AY.40.00028
ORF1ab/nsp1109P109PccTccC152160B.1.1.70.000136
ORF1ab/nsp1109P109PccTccA6160B.1.1.70.000005
ORF1ab/nsp1109P109PccTccG2160B.1.1.70.000002
ORF1ab/nsp1109P109PccTccC152152AY.1010.074546
ORF1ab/nsp1109P109LcCtcTt6465All0.000012
ORF1ab/nsp1109P109LcCTcTC165All0
ORF1ab/nsp1109P109delCCT---5959All0.000011
ORF1ab/nsp1109P109PccTccC3056B.1.617.20.000113
ORF1ab/nsp1109P109PccTccA2556B.1.617.20.000094
ORF1ab/nsp1109P109PccTccG156B.1.617.20.000004
ORF1ab/nsp1109P109PccTccC3953AY.430.000173
ORF1ab/nsp1109P109PccTccA1453AY.430.000062
ORF1ab/nsp1109P109PccTccC4851AY.40.000075
ORF1ab/nsp1109P109PccTccG351AY.40.000005
ORF1ab/nsp1109P109PccTccG2639AY.440.000158
ORF1ab/nsp1109P109PccTccC939AY.440.000055
ORF1ab/nsp1109P109PccTccA439AY.440.000024
ORF1ab/nsp1109P109PccTccC3232B.1.2800.228571
ORF1ab/nsp1109P109PccTccC2930AY.250.000174
ORF1ab/nsp1109P109PccTccA130AY.250.000006
ORF1ab/nsp1109P109LcCtcTt2323AY.40.000036
ORF1ab/nsp1109P109PccTccC1622B.1.20.000141
ORF1ab/nsp1109P109PccTccA422B.1.20.000035
ORF1ab/nsp1109P109PccTccG222B.1.20.000018
ORF1ab/nsp1109P109TCctAct1919All0.000004
ORF1ab/nsp1109P109PccTccC1219AY.1030.000075
ORF1ab/nsp1109P109PccTccG519AY.1030.000031
ORF1ab/nsp1109P109PccTccA219AY.1030.000012
ORF1ab/nsp1109P109SCctTct1818B.1.1.70.000016
ORF1ab/nsp1109P109SCctTct1818B.1.4970.005666
ORF1ab/nsp1109P109PccTccC1818P.1.120.008712
ORF1ab/nsp1109P109PccTccC1717B.1.177.120.002579
ORF1ab/nsp1109P109SCctTct1616AY.50.00033
ORF1ab/nsp1109P109SCctTct1515B.1.6210.001328
ORF1ab/nsp1109P109SCctTct1414AY.440.000085
ORF1ab/nsp1109P109PccTccC1414B.1.110.30.010057
ORF1ab/nsp1109P109SCctTct1212AY.30.000119
ORF1ab/nsp1109P109PccTccC1011B.1.10.000181
ORF1ab/nsp1109P109PccTccA111B.1.10.000018
ORF1ab/nsp1109P109SCctTct1010AY.430.000044
ORF1ab/nsp1109P109PccTccC89B.10.000073
ORF1ab/nsp1109P109PccTccA19B.10.000009
ORF1ab/nsp1109P109PccTccC99B.1.4290.000212
ORF1ab/nsp1109P109PccTccC88AY.1000.000368
ORF1ab/nsp1109P109HcCtcAt88AY.470.000249
ORF1ab/nsp1109P109PccTccC88B.1.1.3010.009434
ORF1ab/nsp1109P109PccTccC58B.1.1770.000066
ORF1ab/nsp1109P109PccTccG28B.1.1770.000026
ORF1ab/nsp1109P109PccTccA18B.1.1770.000013
ORF1ab/nsp1109P109SCctTct88B.1.617.20.00003
ORF1ab/nsp1109P109PccTccC88B.30.006645
ORF1ab/nsp1109P109PccTccC47AY.1180.000251
ORF1ab/nsp1109P109PccTccG37AY.1180.000188
ORF1ab/nsp1109P109SCctTct77AY.250.000042
ORF1ab/nsp1109P109SCctTct77AY.4.50.000752
ORF1ab/nsp1109P109PccTccC67AY.5.30.002024
ORF1ab/nsp1109P109PccTccA17AY.5.30.000337
ORF1ab/nsp1109P109SCctTct77B.1.177.320.009447
ORF1ab/nsp1109P109PccTccA47B.1.6370.000292
ORF1ab/nsp1109P109PccTccC37B.1.6370.000219
ORF1ab/nsp1109P109SCctTct66AY.750.000336
ORF1ab/nsp1109P109PccTccC66B.1.1.3030.016575
ORF1ab/nsp1109P109delCCT---66B.1.1.70.000005
ORF1ab/nsp1109P109SCctTct66B.1.1770.000079
ORF1ab/nsp1109P109LcCtcTt55B.1.1.70.000004
ORF1ab/nsp1109P109PccTccC55P.1.140.000239
ORF1ab/nsp1109P109RcCtcGt44All0.000001
ORF1ab/nsp1109P109PccTccC34AY.1020.00008
ORF1ab/nsp1109P109PccTccA14AY.1020.000027
ORF1ab/nsp1109P109PccTccC44AY.1190.000141
ORF1ab/nsp1109P109PccTccC44AY.200.000155
ORF1ab/nsp1109P109PccTccC44AY.270.000259
ORF1ab/nsp1109P109SCctTct44AY.390.000099
ORF1ab/nsp1109P109PccTccA34AY.390.000074
ORF1ab/nsp1109P109PccTccC14AY.390.000025
ORF1ab/nsp1109P109delCCT---44AY.40.000006
ORF1ab/nsp1109P109LcCtcTt44AY.440.000024
ORF1ab/nsp1109P109PccTccA34AY.50.000062
ORF1ab/nsp1109P109PccTccC14AY.50.000021
ORF1ab/nsp1109P109SCctTct44B.10.000037
ORF1ab/nsp1109P109SCctTct44B.1.10.000073
ORF1ab/nsp1109P109delCCT---44B.1.1.330.001684
ORF1ab/nsp1109P109delCCT---44B.1.1.3480.003185
ORF1ab/nsp1109P109HcCtcAt44B.1.1770.000053
ORF1ab/nsp1109P109PccTccC44B.1.2100.008529
ORF1ab/nsp1109P109LcCtcTt44B.1.617.20.000015
ORF1ab/nsp1109P109PccTccC44P.1.130.003594
ORF1ab/nsp1109P109del1ccTcc-33All0.000001
ORF1ab/nsp1109P109VCCtGTt33All0.000001
ORF1ab/nsp1109P109CCCtTGt23All0
ORF1ab/nsp1109P109CCCTTGC13All0
ORF1ab/nsp1109P109PccTccA33AY.1140.000693
ORF1ab/nsp1109P109TCctAct33AY.120.000948
ORF1ab/nsp1109P109PccTccA23AY.230.000139
ORF1ab/nsp1109P109PccTccC13AY.230.00007
ORF1ab/nsp1109P109PccTccC33AY.260.000085
ORF1ab/nsp1109P109delCCT---33AY.430.000013
ORF1ab/nsp1109P109PccTccC23AY.450.000243
ORF1ab/nsp1109P109PccTccA13AY.450.000122
ORF1ab/nsp1109P109SCctTct33AY.460.000312
ORF1ab/nsp1109P109PccTccC23AY.460.000208
ORF1ab/nsp1109P109PccTccA13AY.460.000104
ORF1ab/nsp1109P109PccTccC33AY.46.20.001906
ORF1ab/nsp1109P109PccTccC33AY.60.000123
ORF1ab/nsp1109P109PccTccC33AY.650.001599
ORF1ab/nsp1109P109LcCtcTt23B.1.10.000036
ORF1ab/nsp1109P109LcCTcTC13B.1.10.000018
ORF1ab/nsp1109P109PccTccC33B.1.1600.000094
ORF1ab/nsp1109P109delCCT---33B.1.177.40.000633
ORF1ab/nsp1109P109SCctTct33B.1.177.520.005272
ORF1ab/nsp1109P109SCctTct33B.1.177.720.010169
ORF1ab/nsp1109P109delCCT---33B.1.20.000026
ORF1ab/nsp1109P109PccTccC33B.1.4270.000151
ORF1ab/nsp1109P109SCctTct33B.1.4430.014019
ORF1ab/nsp1109P109PccTccC23B.1.5260.000047
ORF1ab/nsp1109P109PccTccG13B.1.5260.000024
ORF1ab/nsp1109P109PccTccC33B.1.5750.00091
ORF1ab/nsp1109P109PccTccG23B.1.6210.000177
ORF1ab/nsp1109P109PccTccC13B.1.6210.000089
ORF1ab/nsp1109P109PccTccC33P.1.160.001122
ORF1ab/nsp1109P109VCCtGTt220.111111
ORF1ab/nsp1109P109LcCtcTt220.111111
ORF1ab/nsp1109P109CCCtTGt220.111111
ORF1ab/nsp1109P109ACctGct22All0
ORF1ab/nsp1109P109SCctTct22AY.1020.000053
ORF1ab/nsp1109P109SCctTct22AY.1030.000012
ORF1ab/nsp1109P109PccTccC22AY.240.000862
ORF1ab/nsp1109P109delCCT---22AY.250.000012
ORF1ab/nsp1109P109LcCtcTt22AY.250.000012
ORF1ab/nsp1109P109TCctAct22AY.30.00002
ORF1ab/nsp1109P109PccTccG22AY.300.000791
ORF1ab/nsp1109P109LcCtcTt22AY.390.000049
ORF1ab/nsp1109P109TCctAct22AY.40.000003
ORF1ab/nsp1109P109PccTccC22AY.4.20.000043
ORF1ab/nsp1109P109LcCtcTt22AY.430.000009
ORF1ab/nsp1109P109HcCtcAt22AY.440.000012
ORF1ab/nsp1109P109PccTccC22AY.500.001599
ORF1ab/nsp1109P109SCctTct22AY.7.10.000225
ORF1ab/nsp1109P109SCctTct22AY.9.10.000167
ORF1ab/nsp1109P109PccTccC22AZ.30.00304
ORF1ab/nsp1109P109HcCtcAt22B.10.000018
ORF1ab/nsp1109P109ACctGct22B.1.1.70.000002
ORF1ab/nsp1109P109delCCT---22B.1.177.540.001213
ORF1ab/nsp1109P109PccTccC22B.1.177.70.00033
ORF1ab/nsp1109P109SCctTct22B.1.177.850.01087
ORF1ab/nsp1109P109HcCtcAt22B.1.20.000018
ORF1ab/nsp1109P109SCctTct22B.1.20.000018
ORF1ab/nsp1109P109PccTccC22B.1.2580.000133
ORF1ab/nsp1109P109SCctTct22B.1.3510.000059
ORF1ab/nsp1109P109SCctTct22B.1.3670.001585
ORF1ab/nsp1109P109LcCtcTt22B.1.5950.000522
ORF1ab/nsp1109P109PccTccC12B.1.5960.000087
ORF1ab/nsp1109P109PccTccG12B.1.5960.000087
ORF1ab/nsp1109P109TCctAct22B.1.617.20.000008
ORF1ab/nsp1109P109PccTccC12C.370.000116
ORF1ab/nsp1109P109PccTccA12C.370.000116
ORF1ab/nsp1109P109LcCtcTt22D.20.00015
ORF1ab/nsp1109P109delCCT---22N.40.008511
ORF1ab/nsp1109P109delCCT---22N.60.014184
ORF1ab/nsp1109P109PccTccC22P.1.10.000635
ORF1ab/nsp1109P109SCctTct22P.1.170.000324
ORF1ab/nsp1109P109delCCT---22P.20.000373
ORF1ab/nsp1109P109PccTccG110.055556
ORF1ab/nsp1109P109delCCT---11A0.000387
ORF1ab/nsp1109P109del2CCt--t11All0
ORF1ab/nsp1109P109LcCtcTt11AY.1000.000046
ORF1ab/nsp1109P109HcCtcAt11AY.1030.000006
ORF1ab/nsp1109P109SCctTct11AY.1050.000643
ORF1ab/nsp1109P109PccTccC11AY.1060.000335
ORF1ab/nsp1109P109LcCtcTt11AY.1060.000335
ORF1ab/nsp1109P109HcCtcAt11AY.1140.000231
ORF1ab/nsp1109P109delCCT---11AY.1160.000287
ORF1ab/nsp1109P109PccTccA11AY.1170.000085
ORF1ab/nsp1109P109SCctTct11AY.1170.000085
ORF1ab/nsp1109P109LcCtcTt11AY.1190.000035
ORF1ab/nsp1109P109delCCT---11AY.120.000316
ORF1ab/nsp1109P109PccTccC11AY.1200.000037
ORF1ab/nsp1109P109PccTccA11AY.130.000161
ORF1ab/nsp1109P109HcCtcAt11AY.160.00038
ORF1ab/nsp1109P109SCctTct11AY.200.000039
ORF1ab/nsp1109P109TCctAct11AY.230.00007
ORF1ab/nsp1109P109SCctTct11AY.240.000431
ORF1ab/nsp1109P109HcCtcAt11AY.250.000006
ORF1ab/nsp1109P109TCctAct11AY.260.000028
ORF1ab/nsp1109P109LcCtcTt11AY.270.000065
ORF1ab/nsp1109P109SCctTct11AY.290.000016
ORF1ab/nsp1109P109PccTccC11AY.290.000016
ORF1ab/nsp1109P109LcCtcTt11AY.30.00001
ORF1ab/nsp1109P109SCctTct11AY.330.000067
ORF1ab/nsp1109P109PccTccA11AY.330.000067
ORF1ab/nsp1109P109SCctTct11AY.340.000097
ORF1ab/nsp1109P109delCCT---11AY.380.000499
ORF1ab/nsp1109P109TCctAct11AY.390.000025
ORF1ab/nsp1109P109HcCtcAt11AY.39.10.00004
ORF1ab/nsp1109P109PccTccC11AY.39.10.00004
ORF1ab/nsp1109P109PccTccA11AY.39.20.001541
ORF1ab/nsp1109P109LcCtcTt11AY.4.20.000022
ORF1ab/nsp1109P109PccTccC11AY.4.30.000842
ORF1ab/nsp1109P109PccTccC11AY.4.50.000107
ORF1ab/nsp1109P109delCCT---11AY.4.50.000107
ORF1ab/nsp1109P109SCctTct11AY.410.000294
ORF1ab/nsp1109P109SCctTct11AY.420.00004
ORF1ab/nsp1109P109PccTccA11AY.420.00004
ORF1ab/nsp1109P109HcCtcAt11AY.430.000004
ORF1ab/nsp1109P109TCctAct11AY.430.000004
ORF1ab/nsp1109P109del1ccTcc-11AY.440.000006
ORF1ab/nsp1109P109RcCtcGt11AY.440.000006
ORF1ab/nsp1109P109delCCT---11AY.46.50.000198
ORF1ab/nsp1109P109LcCtcTt11AY.470.000031
ORF1ab/nsp1109P109TCctAct11AY.470.000031
ORF1ab/nsp1109P109HcCtcAt11AY.50.000021
ORF1ab/nsp1109P109SCctTct11AY.5.30.000337
ORF1ab/nsp1109P109HcCtcAt11AY.520.000814
ORF1ab/nsp1109P109HcCtcAt11AY.540.000095
ORF1ab/nsp1109P109LcCtcTt11AY.540.000095
ORF1ab/nsp1109P109LcCtcTt11AY.560.001605
ORF1ab/nsp1109P109delCCT---11AY.640.000595
ORF1ab/nsp1109P109delCCT---11AY.650.000533
ORF1ab/nsp1109P109SCctTct11AY.70.000196
ORF1ab/nsp1109P109HcCtcAt11AY.7.10.000113
ORF1ab/nsp1109P109del1ccTcc-11AY.790.001211
ORF1ab/nsp1109P109TCctAct11AY.90.000068
ORF1ab/nsp1109P109PccTccC11AY.90.000068
ORF1ab/nsp1109P109delCCT---11AY.9.10.000084
ORF1ab/nsp1109P109PccTccC11AY.9.10.000084
ORF1ab/nsp1109P109PccTccC11AY.9.20.000037
ORF1ab/nsp1109P109HcCtcAt11AY.900.000684
ORF1ab/nsp1109P109PccTccC11AY.920.000287
ORF1ab/nsp1109P109delCCT---11AY.950.000761
ORF1ab/nsp1109P109PccTccA11AY.960.002075
ORF1ab/nsp1109P109TCctAct11AY.980.000079
ORF1ab/nsp1109P109TCctAct11AY.98.10.000048
ORF1ab/nsp1109P109PccTccC11AY.990.001049
ORF1ab/nsp1109P109delCCT---11B.10.000009
ORF1ab/nsp1109P109RcCtcGt11B.10.000009
ORF1ab/nsp1109P109delCCT---11B.1.10.000018
ORF1ab/nsp1109P109SCctTct11B.1.1.1700.001247
ORF1ab/nsp1109P109SCctTct11B.1.1.1980.001468
ORF1ab/nsp1109P109PccTccC11B.1.1.2940.001266
ORF1ab/nsp1109P109SCctTct11B.1.1.2980.000862
ORF1ab/nsp1109P109PccTccA11B.1.1.3060.000438
ORF1ab/nsp1109P109PccTccC11B.1.1.4090.002833
ORF1ab/nsp1109P109PccTccA11B.1.1.500.000679
ORF1ab/nsp1109P109SCctTct11B.1.1.500.000679
ORF1ab/nsp1109P109SCctTct11B.1.1.5190.00004
ORF1ab/nsp1109P109LcCtcTt11B.1.1.5190.00004
ORF1ab/nsp1109P109VCCtGTt11B.1.1.70.000001
ORF1ab/nsp1109P109del2CCt--t11B.1.1.70.000001
ORF1ab/nsp1109P109RcCtcGt11B.1.1.70.000001
ORF1ab/nsp1109P109HcCtcAt11B.1.1.700.000341
ORF1ab/nsp1109P109SCctTct11B.1.1600.000031
ORF1ab/nsp1109P109SCctTct11B.1.160.160.000929
ORF1ab/nsp1109P109RcCtcGt11B.1.1770.000013
ORF1ab/nsp1109P109SCctTct11B.1.177.120.000152
ORF1ab/nsp1109P109LcCtcTt11B.1.177.120.000152
ORF1ab/nsp1109P109PccTccC11B.1.177.210.000076
ORF1ab/nsp1109P109SCctTct11B.1.177.330.001645
ORF1ab/nsp1109P109PccTccC11B.1.177.330.001645
ORF1ab/nsp1109P109SCctTct11B.1.177.440.000519
ORF1ab/nsp1109P109delCCT---11B.1.177.570.000281
ORF1ab/nsp1109P109delCCT---11B.1.1790.003759
ORF1ab/nsp1109P109del1ccTcc-11B.1.20.000009
ORF1ab/nsp1109P109TCctAct11B.1.20.000009
ORF1ab/nsp1109P109LcCtcTt11B.1.20.000009
ORF1ab/nsp1109P109SCctTct11B.1.2060.000816
ORF1ab/nsp1109P109delCCT---11B.1.2110.025
ORF1ab/nsp1109P109PccTccC11B.1.2430.00007
ORF1ab/nsp1109P109SCctTct11B.1.2580.000067
ORF1ab/nsp1109P109delCCT---11B.1.2580.000067
ORF1ab/nsp1109P109PccTccC11B.1.3110.000275
ORF1ab/nsp1109P109SCctTct11B.1.3400.004292
ORF1ab/nsp1109P109PccTccC11B.1.3510.00003
ORF1ab/nsp1109P109delCCT---11B.1.3510.00003
ORF1ab/nsp1109P109delCCT---11B.1.360.000146
ORF1ab/nsp1109P109TCctAct11B.1.36.290.000517
ORF1ab/nsp1109P109PccTccC11B.1.4010.008197
ORF1ab/nsp1109P109SCctTct11B.1.4110.003704
ORF1ab/nsp1109P109delCCT---11B.1.4270.00005
ORF1ab/nsp1109P109delCCT---11B.1.4290.000024
ORF1ab/nsp1109P109SCctTct11B.1.5820.000491
ORF1ab/nsp1109P109PccTccC11B.1.5820.000491
ORF1ab/nsp1109P109HcCtcAt11B.1.5960.000087
ORF1ab/nsp1109P109LcCtcTt11B.1.5960.000087
ORF1ab/nsp1109P109PccTccC11B.1.5970.00463
ORF1ab/nsp1109P109PccTccC11B.1.617.10.000129
ORF1ab/nsp1109P109CCCTTGC11B.1.617.20.000004
ORF1ab/nsp1109P109SCctTct11B.600.015873
ORF1ab/nsp1109P109delCCT---11C.170.055556
ORF1ab/nsp1109P109delCCT---11C.350.000774
ORF1ab/nsp1109P109PccTccC11C.37.10.002618
ORF1ab/nsp1109P109PccTccG11D.20.000075
ORF1ab/nsp1109P109SCctTct11P.10.000016
ORF1ab/nsp1109P109LcCtcTt11P.10.000016
ORF1ab/nsp1109P109SCctTct11P.1.120.000484
ORF1ab/nsp1109P109PccTccC11P.1.150.000232
ORF1ab/nsp1109P109PccTccG11P.1.170.000162
ORF1ab/nsp1109P109PccTccC11P.1.70.000319
ORF1ab/nsp1109P109PccTccC11P.20.000187
ORF1ab/nsp1109P109HcCtcAt11Q.70.001111
ORF1ab/nsp1109P109PccTccC11Q.80.000165
ORF1ab/nsp1109P109SCctTct11R.10.00009