CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 108 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1108V108VV108VsyngtCgtT187318160.969568587-589

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1108V108VgtCgtT18161873All0.000347
ORF1ab/nsp1108V108VgtCgtT297299AY.40.000462
ORF1ab/nsp1108V108VgtCgtT276280B.1.1.70.000247
ORF1ab/nsp1108V108VgtCgtT223224B.1.1770.002936
ORF1ab/nsp1108V108VgtCgtT184184B.1.1.2040.559271
ORF1ab/nsp1108V108VgtCgtT103107B.1.617.20.000388
ORF1ab/nsp1108V108VgtCgtT9697AY.430.000425
ORF1ab/nsp1108V108VgtCgtT7676AY.1140.017564
ORF1ab/nsp1108V108VgtCgtT4851B.10.00044
ORF1ab/nsp1108V108VgtCgtT3939B.1.1390.028592
ORF1ab/nsp1108V108VgtCgtT3737AY.1190.001306
ORF1ab/nsp1108V108VgtCgtT3535AY.98.10.001695
ORF1ab/nsp1108V108VgtCgtT3535B.1.20.000308
ORF1ab/nsp1108V108VgtCgtT3333AY.1030.000205
ORF1ab/nsp1108V108VgtCgtT729AY.260.000198
ORF1ab/nsp1108V108VgtCgtT2526AY.440.000152
ORF1ab/nsp1108V108VgtCgtT2525AY.250.00015
ORF1ab/nsp1108V108VgtCgtT2424B.1.360.003502
ORF1ab/nsp1108V108VgtCgtT1617AY.200.000622
ORF1ab/nsp1108V108VgtCgtT1214B.1.10.000218
ORF1ab/nsp1108V108VgtCgtT1212AY.1020.000318
ORF1ab/nsp1108V108VgtCgtT1212AY.30.000119
ORF1ab/nsp1108V108VgtCgtT68P.10.000095
ORF1ab/nsp1108V108VgtCgtT77B.1.1.3110.002507
ORF1ab/nsp1108V108VgtCgtT77B.1.2320.003761
ORF1ab/nsp1108V108VgtCgtT66AY.390.000148
ORF1ab/nsp1108V108VgtCgtT66AY.9.10.000502
ORF1ab/nsp1108V108VgtCgtT66B.1.1.5190.000238
ORF1ab/nsp1108V108VgtCgtT66B.1.6370.000438
ORF1ab/nsp1108V108VgtCgtT66P.1.150.001394
ORF1ab/nsp1108V108VgtCgtT55AY.290.000079
ORF1ab/nsp1108V108VgtCgtT55AY.610.000524
ORF1ab/nsp1108V108VgtCgtT55C.160.005302
ORF1ab/nsp1108V108VgtCgtT44B.1.1.280.001245
ORF1ab/nsp1108V108VgtCgtT44B.1.177.40.000844
ORF1ab/nsp1108V108VgtCgtT33A.2.50.001497
ORF1ab/nsp1108V108VgtCgtT33AY.230.000209
ORF1ab/nsp1108V108VgtCgtT23AY.450.000243
ORF1ab/nsp1108V108VgtCgtT33AY.980.000237
ORF1ab/nsp1108V108VgtCgtT33B.1.3510.000089
ORF1ab/nsp1108V108VgtCgtT23B.1.4270.000101
ORF1ab/nsp1108V108VgtCgtT33B.1.5260.000071
ORF1ab/nsp1108V108VgtCgtT33B.1.6210.000266
ORF1ab/nsp1108V108VgtCgtT33P.1.140.000143
ORF1ab/nsp1108V108VgtCgtT33P.1.170.000485
ORF1ab/nsp1108V108VgtCgtT22AY.1180.000125
ORF1ab/nsp1108V108VgtCgtT22AY.120.000632
ORF1ab/nsp1108V108VgtCgtT22AY.130.000322
ORF1ab/nsp1108V108VgtCgtT12AY.330.000067
ORF1ab/nsp1108V108VgtCgtT22AY.400.001929
ORF1ab/nsp1108V108VgtCgtT22AY.420.00008
ORF1ab/nsp1108V108VgtCgtT22AY.460.000208
ORF1ab/nsp1108V108VgtCgtT22AY.470.000062
ORF1ab/nsp1108V108VgtCgtT22AY.50.000041
ORF1ab/nsp1108V108VgtCgtT22AY.530.000575
ORF1ab/nsp1108V108VgtCgtT22AY.680.000547
ORF1ab/nsp1108V108VgtCgtT22AY.880.001768
ORF1ab/nsp1108V108VgtCgtT22AY.940.000885
ORF1ab/nsp1108V108VgtCgtT22AY.99.20.000184
ORF1ab/nsp1108V108VgtCgtT22B.1.1.2140.000111
ORF1ab/nsp1108V108VgtCgtT22B.1.1.250.001137
ORF1ab/nsp1108V108VgtCgtT22B.1.1.3170.000823
ORF1ab/nsp1108V108VgtCgtT22B.1.1.3970.004505
ORF1ab/nsp1108V108VgtCgtT22B.1.177.740.030303
ORF1ab/nsp1108V108VgtCgtT22B.1.2390.002442
ORF1ab/nsp1108V108VgtCgtT22B.1.4280.002041
ORF1ab/nsp1108V108VgtCgtT22B.1.438.10.000215
ORF1ab/nsp1108V108VgtCgtT22B.1.9.40.01227
ORF1ab/nsp1108V108VgtCgtT22C.360.001821
ORF1ab/nsp1108V108VgtCgtT11AY.1060.000335
ORF1ab/nsp1108V108VgtCgtT11AY.1160.000287
ORF1ab/nsp1108V108VgtCgtT11AY.1170.000085
ORF1ab/nsp1108V108VgtCgtT11AY.140.000088
ORF1ab/nsp1108V108VgtCgtT11AY.240.000431
ORF1ab/nsp1108V108VgtCgtT11AY.270.000065
ORF1ab/nsp1108V108VgtCgtT11AY.29.10.000221
ORF1ab/nsp1108V108VgtCgtT11AY.340.000097
ORF1ab/nsp1108V108VgtCgtT11AY.4.40.000409
ORF1ab/nsp1108V108VgtCgtT11AY.5.40.000277
ORF1ab/nsp1108V108VgtCgtT11AY.550.000917
ORF1ab/nsp1108V108VgtCgtT11AY.60.000041
ORF1ab/nsp1108V108VgtCgtT11AY.710.000475
ORF1ab/nsp1108V108VgtCgtT11AY.750.000056
ORF1ab/nsp1108V108VgtCgtT11AY.9.20.000037
ORF1ab/nsp1108V108VgtCgtT11AY.920.000287
ORF1ab/nsp1108V108VgtCgtT11AY.950.000761
ORF1ab/nsp1108V108VgtCgtT11B0.000128
ORF1ab/nsp1108V108VgtCgtT11B.1.1.10.000327
ORF1ab/nsp1108V108VgtCgtT11B.1.1.1330.008475
ORF1ab/nsp1108V108VgtCgtT11B.1.1.2160.00089
ORF1ab/nsp1108V108VgtCgtT11B.1.1.2310.003096
ORF1ab/nsp1108V108VgtCgtT11B.1.1.3370.003597
ORF1ab/nsp1108V108VgtCgtT11B.1.1.4860.001577
ORF1ab/nsp1108V108VgtCgtT11B.1.1470.000756
ORF1ab/nsp1108V108VgtCgtT11B.1.1600.000031
ORF1ab/nsp1108V108VgtCgtT11B.1.160.90.007194
ORF1ab/nsp1108V108VgtCgtT11B.1.177.100.000878
ORF1ab/nsp1108V108VgtCgtT11B.1.177.560.000668
ORF1ab/nsp1108V108VgtCgtT11B.1.2180.005155
ORF1ab/nsp1108V108VgtCgtT11B.1.2210.000071
ORF1ab/nsp1108V108VgtCgtT11B.1.2430.00007
ORF1ab/nsp1108V108VgtCgtT11B.1.3060.005714
ORF1ab/nsp1108V108VgtCgtT11B.1.3260.007576
ORF1ab/nsp1108V108VgtCgtT11B.1.36.260.002857
ORF1ab/nsp1108V108VgtCgtT11B.1.3690.000285
ORF1ab/nsp1108V108VgtCgtT11B.1.429.10.012048
ORF1ab/nsp1108V108VgtCgtT11B.1.4730.019231
ORF1ab/nsp1108V108VgtCgtT11B.1.5230.002451
ORF1ab/nsp1108V108VgtCgtT11B.1.564.10.001577
ORF1ab/nsp1108V108VgtCgtT11B.1.5670.003333
ORF1ab/nsp1108V108VgtCgtT11B.1.5950.000261
ORF1ab/nsp1108V108VgtCgtT11B.1.5960.000087
ORF1ab/nsp1108V108VgtCgtT11B.1.6000.005848
ORF1ab/nsp1108V108VgtCgtT11B.1.6190.000871
ORF1ab/nsp1108V108VgtCgtT11B.1.6280.000352
ORF1ab/nsp1108V108VgtCgtT11B.290.003509
ORF1ab/nsp1108V108VgtCgtT11C.36.3.10.002717
ORF1ab/nsp1108V108VgtCgtT11D.20.000075
ORF1ab/nsp1108V108VgtCgtT11P.1.120.000484
ORF1ab/nsp1108V108VgtCgtT11P.20.000187
ORF1ab/nsp1108V108VgtCgtT11P.60.003145
ORF1ab/nsp1108V108VgtCgtT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.