CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 108 | V108V | V108V | syn | gtC | gtT | 1873 | 1816 | 0.969568 | 587-589 |
ORF1ab/nsp1 | 108 | V108V | V108V | syn | gtC | gtA | 1873 | 56 | 0.0298986 | 587-589 |
ORF1ab/nsp1 | 108 | V108V | V108V | syn | gtC | gtG | 1873 | 1 | 0.000533903 | 587-589 |
ORF1ab/nsp1 | 108 | V108I | V108I | nonsyn | Gtc | Atc | 410 | 410 | 1 | 587-589 |
ORF1ab/nsp1 | 108 | V108F | V108F | nonsyn | Gtc | Ttc | 87 | 87 | 1 | 587-589 |
ORF1ab/nsp1 | 108 | V108del | V108del | del | GTC | --- | 64 | 64 | 1 | 587-589 |
ORF1ab/nsp1 | 108 | V108A | V108A | nonsyn | gTc | gCc | 63 | 62 | 0.984127 | 587-589 |
ORF1ab/nsp1 | 108 | V108A | V108A | nonsyn | gTC | gCA | 63 | 1 | 0.015873 | 587-589 |
ORF1ab/nsp1 | 108 | V108L | V108L | nonsyn | Gtc | Ctc | 9 | 8 | 0.888889 | 587-589 |
ORF1ab/nsp1 | 108 | V108L | V108L | nonsyn | GtC | CtA | 9 | 1 | 0.111111 | 587-589 |
ORF1ab/nsp1 | 108 | V108G | V108G | nonsyn | gTc | gGc | 4 | 4 | 1 | 587-589 |
ORF1ab/nsp1 | 108 | V108del1 | V108del1 | del | Gtc | -tc | 3 | 1 | 0.333333 | 587-589 |
ORF1ab/nsp1 | 108 | V108del1 | V108del1 | del | GTC | -NN | 3 | 1 | 0.333333 | 587-589 |
ORF1ab/nsp1 | 108 | V108del1 | V108del1 | del | gTc | g-c | 3 | 1 | 0.333333 | 587-589 |
ORF1ab/nsp1 | 108 | V108R | V108R | nonsyn | GTc | CGc | 2 | 2 | 1 | 587-589 |
ORF1ab/nsp1 | 108 | V108S | V108S | nonsyn | GTC | TCA | 1 | 1 | 1 | 587-589 |
ORF1ab/nsp1 | 108 | V108del2 | V108del2 | del | GTc | --c | 1 | 1 | 1 | 587-589 |
ORF1ab/nsp1 | 108 | V108D | V108D | nonsyn | gTc | gAc | 1 | 1 | 1 | 587-589 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1816 | 1873 | All | 0.000347 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 56 | 1873 | All | 0.000011 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtG | 1 | 1873 | All | 0 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 410 | 410 | All | 0.000078 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 297 | 299 | AY.4 | 0.000462 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 2 | 299 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 276 | 280 | B.1.1.7 | 0.000247 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 4 | 280 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 223 | 224 | B.1.177 | 0.002936 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 224 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 184 | 184 | B.1.1.204 | 0.559271 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 103 | 107 | B.1.617.2 | 0.000388 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 4 | 107 | B.1.617.2 | 0.000015 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 96 | 97 | AY.43 | 0.000425 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 97 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 87 | 87 | All | 0.000017 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 76 | 76 | AY.114 | 0.017564 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 67 | 67 | AY.43 | 0.000297 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 64 | 64 | All | 0.000012 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 62 | 63 | All | 0.000012 |
ORF1ab/nsp1 | 108 | V108A | gTC | gCA | 1 | 63 | All | 0 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 48 | 51 | B.1 | 0.00044 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 2 | 51 | B.1 | 0.000018 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtG | 1 | 51 | B.1 | 0.000009 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 39 | 39 | B.1.139 | 0.028592 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 39 | 39 | P.1.14 | 0.001864 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 38 | 38 | AY.4.2.1 | 0.005662 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 37 | 37 | AY.119 | 0.001306 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 35 | 35 | AY.98.1 | 0.001695 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 33 | 33 | AY.103 | 0.000205 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 22 | 29 | AY.26 | 0.000623 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 7 | 29 | AY.26 | 0.000198 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 25 | 26 | AY.44 | 0.000152 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 26 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 24 | 24 | B.1.36 | 0.003502 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 19 | 19 | B.1.1.308 | 0.223529 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 19 | 19 | B.1.36.8 | 0.019 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 16 | 17 | AY.20 | 0.000622 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 17 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 12 | 14 | B.1.1 | 0.000218 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 2 | 14 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp1 | 108 | V108L | Gtc | Ctc | 8 | 9 | All | 0.000002 |
ORF1ab/nsp1 | 108 | V108L | GtC | CtA | 1 | 9 | All | 0 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 6 | 8 | P.1 | 0.000095 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 2 | 8 | P.1 | 0.000032 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 7 | 7 | B.1.1.311 | 0.002507 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 7 | 7 | B.1.232 | 0.003761 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 6 | 6 | B.1.126 | 0.007653 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 5 | 5 | C.16 | 0.005302 |
ORF1ab/nsp1 | 108 | V108G | gTc | gGc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 108 | V108A | gTC | gCA | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp1 | 108 | V108del1 | Gtc | -tc | 1 | 3 | All | 0 |
ORF1ab/nsp1 | 108 | V108del1 | GTC | -NN | 1 | 3 | All | 0 |
ORF1ab/nsp1 | 108 | V108del1 | gTc | g-c | 1 | 3 | All | 0 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 3 | AY.45 | 0.000243 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 3 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 3 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 3 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 108 | V108L | Gtc | Ctc | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 108 | V108R | GTc | CGc | 2 | 2 | All | 0 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp1 | 108 | V108L | Gtc | Ctc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.177.74 | 0.030303 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 108 | V108del1 | GTC | -NN | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 108 | V108del1 | Gtc | -tc | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | B.1.9.4 | 0.01227 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 108 | V108S | GTC | TCA | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 108 | V108D | gTc | gAc | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 108 | V108del2 | GTc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 108 | V108L | Gtc | Ctc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 108 | V108R | GTc | CGc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 108 | V108L | Gtc | Ctc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 108 | V108G | gTc | gGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 108 | V108R | GTc | CGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 108 | V108G | gTc | gGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 108 | V108del1 | gTc | g-c | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 108 | V108D | gTc | gAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.1.114 | 0.066667 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 108 | V108S | GTC | TCA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 108 | V108L | Gtc | Ctc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.117 | 0.0125 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 108 | V108del2 | GTc | --c | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.177.67 | 0.007634 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 108 | V108L | Gtc | Ctc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 108 | V108G | gTc | gGc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 108 | V108L | GtC | CtA | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp1 | 108 | V108A | gTc | gCc | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp1 | 108 | V108F | Gtc | Ttc | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp1 | 108 | V108del | GTC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp1 | 108 | V108G | gTc | gGc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 108 | V108I | Gtc | Atc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp1 | 108 | V108V | gtC | gtT | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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