CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 108

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1108V108VV108VsyngtCgtT187318160.969568587-589
ORF1ab/nsp1108V108VV108VsyngtCgtA1873560.0298986587-589
ORF1ab/nsp1108V108VV108VsyngtCgtG187310.000533903587-589
ORF1ab/nsp1108V108IV108InonsynGtcAtc4104101587-589
ORF1ab/nsp1108V108FV108FnonsynGtcTtc87871587-589
ORF1ab/nsp1108V108delV108deldelGTC---64641587-589
ORF1ab/nsp1108V108AV108AnonsyngTcgCc63620.984127587-589
ORF1ab/nsp1108V108AV108AnonsyngTCgCA6310.015873587-589
ORF1ab/nsp1108V108LV108LnonsynGtcCtc980.888889587-589
ORF1ab/nsp1108V108LV108LnonsynGtCCtA910.111111587-589
ORF1ab/nsp1108V108GV108GnonsyngTcgGc441587-589
ORF1ab/nsp1108V108del1V108del1delGtc-tc310.333333587-589
ORF1ab/nsp1108V108del1V108del1delGTC-NN310.333333587-589
ORF1ab/nsp1108V108del1V108del1delgTcg-c310.333333587-589
ORF1ab/nsp1108V108RV108RnonsynGTcCGc221587-589
ORF1ab/nsp1108V108SV108SnonsynGTCTCA111587-589
ORF1ab/nsp1108V108del2V108del2delGTc--c111587-589
ORF1ab/nsp1108V108DV108DnonsyngTcgAc111587-589

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1108V108VgtCgtT18161873All0.000347
ORF1ab/nsp1108V108VgtCgtA561873All0.000011
ORF1ab/nsp1108V108VgtCgtG11873All0
ORF1ab/nsp1108V108IGtcAtc410410All0.000078
ORF1ab/nsp1108V108VgtCgtT297299AY.40.000462
ORF1ab/nsp1108V108VgtCgtA2299AY.40.000003
ORF1ab/nsp1108V108VgtCgtT276280B.1.1.70.000247
ORF1ab/nsp1108V108VgtCgtA4280B.1.1.70.000004
ORF1ab/nsp1108V108VgtCgtT223224B.1.1770.002936
ORF1ab/nsp1108V108VgtCgtA1224B.1.1770.000013
ORF1ab/nsp1108V108VgtCgtT184184B.1.1.2040.559271
ORF1ab/nsp1108V108VgtCgtT103107B.1.617.20.000388
ORF1ab/nsp1108V108VgtCgtA4107B.1.617.20.000015
ORF1ab/nsp1108V108VgtCgtT9697AY.430.000425
ORF1ab/nsp1108V108VgtCgtA197AY.430.000004
ORF1ab/nsp1108V108FGtcTtc8787All0.000017
ORF1ab/nsp1108V108VgtCgtT7676AY.1140.017564
ORF1ab/nsp1108V108IGtcAtc6767AY.430.000297
ORF1ab/nsp1108V108delGTC---6464All0.000012
ORF1ab/nsp1108V108AgTcgCc6263All0.000012
ORF1ab/nsp1108V108AgTCgCA163All0
ORF1ab/nsp1108V108VgtCgtT4851B.10.00044
ORF1ab/nsp1108V108VgtCgtA251B.10.000018
ORF1ab/nsp1108V108VgtCgtG151B.10.000009
ORF1ab/nsp1108V108IGtcAtc3939B.1.1.70.000035
ORF1ab/nsp1108V108VgtCgtT3939B.1.1390.028592
ORF1ab/nsp1108V108IGtcAtc3939P.1.140.001864
ORF1ab/nsp1108V108IGtcAtc3838AY.4.2.10.005662
ORF1ab/nsp1108V108VgtCgtT3737AY.1190.001306
ORF1ab/nsp1108V108VgtCgtT3535AY.98.10.001695
ORF1ab/nsp1108V108VgtCgtT3535B.1.20.000308
ORF1ab/nsp1108V108VgtCgtT3333AY.1030.000205
ORF1ab/nsp1108V108VgtCgtA2229AY.260.000623
ORF1ab/nsp1108V108VgtCgtT729AY.260.000198
ORF1ab/nsp1108V108IGtcAtc2727B.1.617.20.000102
ORF1ab/nsp1108V108VgtCgtT2526AY.440.000152
ORF1ab/nsp1108V108VgtCgtA126AY.440.000006
ORF1ab/nsp1108V108VgtCgtT2525AY.250.00015
ORF1ab/nsp1108V108VgtCgtT2424B.1.360.003502
ORF1ab/nsp1108V108IGtcAtc2323AY.40.000036
ORF1ab/nsp1108V108AgTcgCc2222AY.40.000034
ORF1ab/nsp1108V108IGtcAtc1919B.1.1.3080.223529
ORF1ab/nsp1108V108IGtcAtc1919B.1.36.80.019
ORF1ab/nsp1108V108VgtCgtT1617AY.200.000622
ORF1ab/nsp1108V108VgtCgtA117AY.200.000039
ORF1ab/nsp1108V108VgtCgtT1214B.1.10.000218
ORF1ab/nsp1108V108VgtCgtA214B.1.10.000036
ORF1ab/nsp1108V108IGtcAtc1313B.1.20.000114
ORF1ab/nsp1108V108VgtCgtT1212AY.1020.000318
ORF1ab/nsp1108V108IGtcAtc1212AY.1030.000075
ORF1ab/nsp1108V108VgtCgtT1212AY.30.000119
ORF1ab/nsp1108V108IGtcAtc1212AY.440.000073
ORF1ab/nsp1108V108FGtcTtc1010AY.390.000247
ORF1ab/nsp1108V108LGtcCtc89All0.000002
ORF1ab/nsp1108V108LGtCCtA19All0
ORF1ab/nsp1108V108FGtcTtc99AY.440.000055
ORF1ab/nsp1108V108FGtcTtc99B.1.1.70.000008
ORF1ab/nsp1108V108delGTC---88B.1.1.70.000007
ORF1ab/nsp1108V108VgtCgtT68P.10.000095
ORF1ab/nsp1108V108VgtCgtA28P.10.000032
ORF1ab/nsp1108V108IGtcAtc77AY.1190.000247
ORF1ab/nsp1108V108VgtCgtT77B.1.1.3110.002507
ORF1ab/nsp1108V108VgtCgtT77B.1.2320.003761
ORF1ab/nsp1108V108IGtcAtc77B.1.3510.000208
ORF1ab/nsp1108V108FGtcTtc66AY.30.00006
ORF1ab/nsp1108V108VgtCgtT66AY.390.000148
ORF1ab/nsp1108V108FGtcTtc66AY.40.000009
ORF1ab/nsp1108V108IGtcAtc66AY.50.000124
ORF1ab/nsp1108V108VgtCgtT66AY.9.10.000502
ORF1ab/nsp1108V108VgtCgtT66B.1.1.5190.000238
ORF1ab/nsp1108V108IGtcAtc66B.1.1260.007653
ORF1ab/nsp1108V108FGtcTtc66B.1.617.20.000023
ORF1ab/nsp1108V108VgtCgtT66B.1.6370.000438
ORF1ab/nsp1108V108VgtCgtT66P.1.150.001394
ORF1ab/nsp1108V108VgtCgtT55AY.290.000079
ORF1ab/nsp1108V108VgtCgtT55AY.610.000524
ORF1ab/nsp1108V108VgtCgtT55C.160.005302
ORF1ab/nsp1108V108GgTcgGc44All0.000001
ORF1ab/nsp1108V108FGtcTtc44AY.1180.000251
ORF1ab/nsp1108V108IGtcAtc44AY.390.000099
ORF1ab/nsp1108V108delGTC---44AY.40.000006
ORF1ab/nsp1108V108IGtcAtc44AY.4.20.000087
ORF1ab/nsp1108V108FGtcTtc44AY.430.000018
ORF1ab/nsp1108V108VgtCgtT44B.1.1.280.001245
ORF1ab/nsp1108V108delGTC---44B.1.1.330.001684
ORF1ab/nsp1108V108delGTC---44B.1.1.3480.003185
ORF1ab/nsp1108V108AgTcgCc34B.1.1.70.000003
ORF1ab/nsp1108V108AgTCgCA14B.1.1.70.000001
ORF1ab/nsp1108V108VgtCgtT44B.1.177.40.000844
ORF1ab/nsp1108V108VgtCgtT33A.2.50.001497
ORF1ab/nsp1108V108del1Gtc-tc13All0
ORF1ab/nsp1108V108del1GTC-NN13All0
ORF1ab/nsp1108V108del1gTcg-c13All0
ORF1ab/nsp1108V108FGtcTtc33AY.1030.000019
ORF1ab/nsp1108V108IGtcAtc33AY.1200.000112
ORF1ab/nsp1108V108IGtcAtc33AY.200.000117
ORF1ab/nsp1108V108VgtCgtT33AY.230.000209
ORF1ab/nsp1108V108IGtcAtc33AY.250.000018
ORF1ab/nsp1108V108IGtcAtc33AY.260.000085
ORF1ab/nsp1108V108IGtcAtc33AY.30.00003
ORF1ab/nsp1108V108IGtcAtc33AY.330.0002
ORF1ab/nsp1108V108delGTC---33AY.430.000013
ORF1ab/nsp1108V108VgtCgtT23AY.450.000243
ORF1ab/nsp1108V108VgtCgtA13AY.450.000122
ORF1ab/nsp1108V108VgtCgtT33AY.980.000237
ORF1ab/nsp1108V108AgTcgCc33B.10.000027
ORF1ab/nsp1108V108IGtcAtc33B.1.1.1890.004539
ORF1ab/nsp1108V108VgtCgtA33B.1.1.2220.000612
ORF1ab/nsp1108V108IGtcAtc33B.1.1770.00004
ORF1ab/nsp1108V108delGTC---33B.1.177.40.000633
ORF1ab/nsp1108V108delGTC---33B.1.20.000026
ORF1ab/nsp1108V108AgTcgCc33B.1.2210.000213
ORF1ab/nsp1108V108VgtCgtT33B.1.3510.000089
ORF1ab/nsp1108V108VgtCgtT23B.1.4270.000101
ORF1ab/nsp1108V108VgtCgtA13B.1.4270.00005
ORF1ab/nsp1108V108VgtCgtT33B.1.5260.000071
ORF1ab/nsp1108V108VgtCgtT33B.1.6210.000266
ORF1ab/nsp1108V108VgtCgtT33P.1.140.000143
ORF1ab/nsp1108V108IGtcAtc33P.1.150.000697
ORF1ab/nsp1108V108VgtCgtT33P.1.170.000485
ORF1ab/nsp1108V108FGtcTtc220.111111
ORF1ab/nsp1108V108LGtcCtc220.111111
ORF1ab/nsp1108V108RGTcCGc22All0
ORF1ab/nsp1108V108IGtcAtc22AY.1160.000574
ORF1ab/nsp1108V108VgtCgtT22AY.1180.000125
ORF1ab/nsp1108V108VgtCgtT22AY.120.000632
ORF1ab/nsp1108V108VgtCgtT22AY.130.000322
ORF1ab/nsp1108V108delGTC---22AY.250.000012
ORF1ab/nsp1108V108AgTcgCc22AY.250.000012
ORF1ab/nsp1108V108IGtcAtc22AY.290.000032
ORF1ab/nsp1108V108AgTcgCc22AY.290.000032
ORF1ab/nsp1108V108AgTcgCc22AY.30.00002
ORF1ab/nsp1108V108VgtCgtA12AY.330.000067
ORF1ab/nsp1108V108VgtCgtT12AY.330.000067
ORF1ab/nsp1108V108IGtcAtc22AY.340.000194
ORF1ab/nsp1108V108IGtcAtc22AY.4.50.000215
ORF1ab/nsp1108V108VgtCgtT22AY.400.001929
ORF1ab/nsp1108V108VgtCgtT22AY.420.00008
ORF1ab/nsp1108V108VgtCgtT22AY.460.000208
ORF1ab/nsp1108V108FGtcTtc22AY.46.40.000329
ORF1ab/nsp1108V108VgtCgtT22AY.470.000062
ORF1ab/nsp1108V108VgtCgtT22AY.50.000041
ORF1ab/nsp1108V108AgTcgCc22AY.50.000041
ORF1ab/nsp1108V108VgtCgtT22AY.530.000575
ORF1ab/nsp1108V108VgtCgtT22AY.680.000547
ORF1ab/nsp1108V108IGtcAtc22AY.750.000112
ORF1ab/nsp1108V108VgtCgtT22AY.880.001768
ORF1ab/nsp1108V108VgtCgtT22AY.940.000885
ORF1ab/nsp1108V108VgtCgtT22AY.99.20.000184
ORF1ab/nsp1108V108LGtcCtc22B.10.000018
ORF1ab/nsp1108V108IGtcAtc22B.1.10.000036
ORF1ab/nsp1108V108AgTcgCc22B.1.10.000036
ORF1ab/nsp1108V108VgtCgtT22B.1.1.2140.000111
ORF1ab/nsp1108V108VgtCgtT22B.1.1.250.001137
ORF1ab/nsp1108V108VgtCgtT22B.1.1.3170.000823
ORF1ab/nsp1108V108VgtCgtT22B.1.1.3970.004505
ORF1ab/nsp1108V108delGTC---22B.1.177.540.001213
ORF1ab/nsp1108V108VgtCgtT22B.1.177.740.030303
ORF1ab/nsp1108V108AgTcgCc22B.1.20.000018
ORF1ab/nsp1108V108VgtCgtT22B.1.2390.002442
ORF1ab/nsp1108V108VgtCgtT22B.1.4280.002041
ORF1ab/nsp1108V108VgtCgtT22B.1.438.10.000215
ORF1ab/nsp1108V108AgTcgCc22B.1.617.20.000008
ORF1ab/nsp1108V108del1GTC-NN12B.1.617.20.000004
ORF1ab/nsp1108V108del1Gtc-tc12B.1.617.20.000004
ORF1ab/nsp1108V108VgtCgtT22B.1.9.40.01227
ORF1ab/nsp1108V108VgtCgtT22C.360.001821
ORF1ab/nsp1108V108delGTC---22N.40.008511
ORF1ab/nsp1108V108delGTC---22N.60.014184
ORF1ab/nsp1108V108FGtcTtc22P.10.000032
ORF1ab/nsp1108V108delGTC---22P.20.000373
ORF1ab/nsp1108V108delGTC---11A0.000387
ORF1ab/nsp1108V108SGTCTCA11All0
ORF1ab/nsp1108V108DgTcgAc11All0
ORF1ab/nsp1108V108del2GTc--c11All0
ORF1ab/nsp1108V108IGtcAtc11AY.10.000396
ORF1ab/nsp1108V108IGtcAtc11AY.1000.000046
ORF1ab/nsp1108V108AgTcgCc11AY.1030.000006
ORF1ab/nsp1108V108VgtCgtT11AY.1060.000335
ORF1ab/nsp1108V108VgtCgtA11AY.1090.00074
ORF1ab/nsp1108V108FGtcTtc11AY.1110.000183
ORF1ab/nsp1108V108FGtcTtc11AY.1130.000142
ORF1ab/nsp1108V108VgtCgtT11AY.1160.000287
ORF1ab/nsp1108V108delGTC---11AY.1160.000287
ORF1ab/nsp1108V108VgtCgtT11AY.1170.000085
ORF1ab/nsp1108V108IGtcAtc11AY.1170.000085
ORF1ab/nsp1108V108delGTC---11AY.120.000316
ORF1ab/nsp1108V108IGtcAtc11AY.120.20.001285
ORF1ab/nsp1108V108VgtCgtT11AY.140.000088
ORF1ab/nsp1108V108LGtcCtc11AY.140.000088
ORF1ab/nsp1108V108RGTcCGc11AY.230.00007
ORF1ab/nsp1108V108IGtcAtc11AY.230.00007
ORF1ab/nsp1108V108VgtCgtT11AY.240.000431
ORF1ab/nsp1108V108FGtcTtc11AY.250.000006
ORF1ab/nsp1108V108FGtcTtc11AY.260.000028
ORF1ab/nsp1108V108VgtCgtT11AY.270.000065
ORF1ab/nsp1108V108VgtCgtT11AY.29.10.000221
ORF1ab/nsp1108V108LGtcCtc11AY.30.00001
ORF1ab/nsp1108V108VgtCgtT11AY.340.000097
ORF1ab/nsp1108V108IGtcAtc11AY.360.000148
ORF1ab/nsp1108V108delGTC---11AY.380.000499
ORF1ab/nsp1108V108AgTcgCc11AY.39.10.00004
ORF1ab/nsp1108V108FGtcTtc11AY.39.10.00004
ORF1ab/nsp1108V108GgTcgGc11AY.40.000002
ORF1ab/nsp1108V108VgtCgtT11AY.4.40.000409
ORF1ab/nsp1108V108delGTC---11AY.4.50.000107
ORF1ab/nsp1108V108FGtcTtc11AY.420.00004
ORF1ab/nsp1108V108RGTcCGc11AY.430.000004
ORF1ab/nsp1108V108GgTcgGc11AY.440.000006
ORF1ab/nsp1108V108FGtcTtc11AY.450.000122
ORF1ab/nsp1108V108IGtcAtc11AY.450.000122
ORF1ab/nsp1108V108IGtcAtc11AY.46.10.001027
ORF1ab/nsp1108V108IGtcAtc11AY.46.30.000934
ORF1ab/nsp1108V108delGTC---11AY.46.50.000198
ORF1ab/nsp1108V108IGtcAtc11AY.470.000031
ORF1ab/nsp1108V108VgtCgtT11AY.5.40.000277
ORF1ab/nsp1108V108VgtCgtT11AY.550.000917
ORF1ab/nsp1108V108VgtCgtT11AY.60.000041
ORF1ab/nsp1108V108IGtcAtc11AY.610.000105
ORF1ab/nsp1108V108AgTcgCc11AY.610.000105
ORF1ab/nsp1108V108delGTC---11AY.640.000595
ORF1ab/nsp1108V108delGTC---11AY.650.000533
ORF1ab/nsp1108V108AgTcgCc11AY.690.000187
ORF1ab/nsp1108V108VgtCgtT11AY.710.000475
ORF1ab/nsp1108V108VgtCgtT11AY.750.000056
ORF1ab/nsp1108V108IGtcAtc11AY.780.001541
ORF1ab/nsp1108V108AgTcgCc11AY.90.000068
ORF1ab/nsp1108V108delGTC---11AY.9.10.000084
ORF1ab/nsp1108V108FGtcTtc11AY.9.20.000037
ORF1ab/nsp1108V108VgtCgtT11AY.9.20.000037
ORF1ab/nsp1108V108IGtcAtc11AY.910.00073
ORF1ab/nsp1108V108VgtCgtT11AY.920.000287
ORF1ab/nsp1108V108delGTC---11AY.950.000761
ORF1ab/nsp1108V108VgtCgtT11AY.950.000761
ORF1ab/nsp1108V108FGtcTtc11AY.99.20.000092
ORF1ab/nsp1108V108VgtCgtT11B0.000128
ORF1ab/nsp1108V108del1gTcg-c11B.10.000009
ORF1ab/nsp1108V108FGtcTtc11B.10.000009
ORF1ab/nsp1108V108IGtcAtc11B.10.000009
ORF1ab/nsp1108V108DgTcgAc11B.10.000009
ORF1ab/nsp1108V108delGTC---11B.10.000009
ORF1ab/nsp1108V108FGtcTtc11B.1.10.000018
ORF1ab/nsp1108V108delGTC---11B.1.10.000018
ORF1ab/nsp1108V108VgtCgtT11B.1.1.10.000327
ORF1ab/nsp1108V108IGtcAtc11B.1.1.1140.066667
ORF1ab/nsp1108V108VgtCgtT11B.1.1.1330.008475
ORF1ab/nsp1108V108AgTcgCc11B.1.1.1890.001513
ORF1ab/nsp1108V108VgtCgtT11B.1.1.2160.00089
ORF1ab/nsp1108V108VgtCgtT11B.1.1.2310.003096
ORF1ab/nsp1108V108IGtcAtc11B.1.1.3170.000412
ORF1ab/nsp1108V108VgtCgtA11B.1.1.3180.000302
ORF1ab/nsp1108V108VgtCgtT11B.1.1.3370.003597
ORF1ab/nsp1108V108VgtCgtA11B.1.1.3510.002793
ORF1ab/nsp1108V108FGtcTtc11B.1.1.4370.010417
ORF1ab/nsp1108V108VgtCgtA11B.1.1.460.004367
ORF1ab/nsp1108V108VgtCgtT11B.1.1.4860.001577
ORF1ab/nsp1108V108IGtcAtc11B.1.1.500.000679
ORF1ab/nsp1108V108IGtcAtc11B.1.1.5190.00004
ORF1ab/nsp1108V108AgTcgCc11B.1.1.5190.00004
ORF1ab/nsp1108V108SGTCTCA11B.1.1.70.000001
ORF1ab/nsp1108V108LGtcCtc11B.1.1.70.000001
ORF1ab/nsp1108V108AgTcgCc11B.1.1170.0125
ORF1ab/nsp1108V108VgtCgtT11B.1.1470.000756
ORF1ab/nsp1108V108AgTcgCc11B.1.1600.000031
ORF1ab/nsp1108V108VgtCgtT11B.1.1600.000031
ORF1ab/nsp1108V108VgtCgtT11B.1.160.90.007194
ORF1ab/nsp1108V108AgTcgCc11B.1.1770.000013
ORF1ab/nsp1108V108FGtcTtc11B.1.1770.000013
ORF1ab/nsp1108V108del2GTc--c11B.1.1770.000013
ORF1ab/nsp1108V108VgtCgtT11B.1.177.100.000878
ORF1ab/nsp1108V108delGTC---11B.1.177.430.001477
ORF1ab/nsp1108V108FGtcTtc11B.1.177.440.000519
ORF1ab/nsp1108V108FGtcTtc11B.1.177.560.000668
ORF1ab/nsp1108V108VgtCgtT11B.1.177.560.000668
ORF1ab/nsp1108V108delGTC---11B.1.177.570.000281
ORF1ab/nsp1108V108FGtcTtc11B.1.177.670.007634
ORF1ab/nsp1108V108delGTC---11B.1.1790.003759
ORF1ab/nsp1108V108FGtcTtc11B.1.20.000009
ORF1ab/nsp1108V108LGtcCtc11B.1.20.000009
ORF1ab/nsp1108V108delGTC---11B.1.2110.025
ORF1ab/nsp1108V108VgtCgtT11B.1.2180.005155
ORF1ab/nsp1108V108VgtCgtT11B.1.2210.000071
ORF1ab/nsp1108V108IGtcAtc11B.1.2210.000071
ORF1ab/nsp1108V108FGtcTtc11B.1.2340.000132
ORF1ab/nsp1108V108VgtCgtT11B.1.2430.00007
ORF1ab/nsp1108V108IGtcAtc11B.1.2430.00007
ORF1ab/nsp1108V108AgTcgCc11B.1.2430.00007
ORF1ab/nsp1108V108FGtcTtc11B.1.2430.00007
ORF1ab/nsp1108V108delGTC---11B.1.2580.000067
ORF1ab/nsp1108V108FGtcTtc11B.1.2580.000067
ORF1ab/nsp1108V108GgTcgGc11B.1.258.170.000104
ORF1ab/nsp1108V108IGtcAtc11B.1.2650.001271
ORF1ab/nsp1108V108VgtCgtT11B.1.3060.005714
ORF1ab/nsp1108V108VgtCgtT11B.1.3260.007576
ORF1ab/nsp1108V108delGTC---11B.1.3510.00003
ORF1ab/nsp1108V108delGTC---11B.1.360.000146
ORF1ab/nsp1108V108IGtcAtc11B.1.36.210.00216
ORF1ab/nsp1108V108VgtCgtT11B.1.36.260.002857
ORF1ab/nsp1108V108IGtcAtc11B.1.36.290.000517
ORF1ab/nsp1108V108VgtCgtT11B.1.3690.000285
ORF1ab/nsp1108V108AgTcgCc11B.1.3690.000285
ORF1ab/nsp1108V108delGTC---11B.1.4270.00005
ORF1ab/nsp1108V108FGtcTtc11B.1.4270.00005
ORF1ab/nsp1108V108delGTC---11B.1.4290.000024
ORF1ab/nsp1108V108VgtCgtA11B.1.4290.000024
ORF1ab/nsp1108V108VgtCgtT11B.1.429.10.012048
ORF1ab/nsp1108V108IGtcAtc11B.1.438.10.000107
ORF1ab/nsp1108V108VgtCgtT11B.1.4730.019231
ORF1ab/nsp1108V108IGtcAtc11B.1.5170.000427
ORF1ab/nsp1108V108VgtCgtT11B.1.5230.002451
ORF1ab/nsp1108V108AgTcgCc11B.1.5250.000113
ORF1ab/nsp1108V108delGTC---11B.1.5260.000024
ORF1ab/nsp1108V108LGtCCtA11B.1.5380.008065
ORF1ab/nsp1108V108VgtCgtT11B.1.564.10.001577
ORF1ab/nsp1108V108AgTcgCc11B.1.5650.00081
ORF1ab/nsp1108V108VgtCgtT11B.1.5670.003333
ORF1ab/nsp1108V108AgTcgCc11B.1.5710.009709
ORF1ab/nsp1108V108VgtCgtA11B.1.5770.000687
ORF1ab/nsp1108V108AgTcgCc11B.1.5800.004065
ORF1ab/nsp1108V108FGtcTtc11B.1.5820.000491
ORF1ab/nsp1108V108delGTC---11B.1.5950.000261
ORF1ab/nsp1108V108IGtcAtc11B.1.5950.000261
ORF1ab/nsp1108V108VgtCgtT11B.1.5950.000261
ORF1ab/nsp1108V108VgtCgtT11B.1.5960.000087
ORF1ab/nsp1108V108VgtCgtT11B.1.6000.005848
ORF1ab/nsp1108V108VgtCgtA11B.1.617.10.000129
ORF1ab/nsp1108V108IGtcAtc11B.1.617.30.002985
ORF1ab/nsp1108V108VgtCgtT11B.1.6190.000871
ORF1ab/nsp1108V108VgtCgtT11B.1.6280.000352
ORF1ab/nsp1108V108AgTcgCc11B.1.910.002075
ORF1ab/nsp1108V108VgtCgtT11B.290.003509
ORF1ab/nsp1108V108FGtcTtc11B.460.020833
ORF1ab/nsp1108V108FGtcTtc11B.550.00295
ORF1ab/nsp1108V108IGtcAtc11B.60.00091
ORF1ab/nsp1108V108VgtCgtA11B.60.00091
ORF1ab/nsp1108V108delGTC---11C.170.055556
ORF1ab/nsp1108V108delGTC---11C.350.000774
ORF1ab/nsp1108V108VgtCgtT11C.36.3.10.002717
ORF1ab/nsp1108V108GgTcgGc11C.370.000116
ORF1ab/nsp1108V108VgtCgtT11D.20.000075
ORF1ab/nsp1108V108IGtcAtc11P.10.000016
ORF1ab/nsp1108V108VgtCgtT11P.1.120.000484
ORF1ab/nsp1108V108VgtCgtT11P.20.000187
ORF1ab/nsp1108V108VgtCgtT11P.60.003145
ORF1ab/nsp1108V108VgtCgtT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.