CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 102 & Codon = gaA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1102E102EE102EsyngaGgaA138013801569-571

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1102E102EgaGgaA13801380All0.000264
ORF1ab/nsp1102E102EgaGgaA748748B.1.1600.023328
ORF1ab/nsp1102E102EgaGgaA216216P.10.003403
ORF1ab/nsp1102E102EgaGgaA7979B.1.1.70.000071
ORF1ab/nsp1102E102EgaGgaA6969B.1.160.200.616071
ORF1ab/nsp1102E102EgaGgaA4040AY.440.000243
ORF1ab/nsp1102E102EgaGgaA2626B.1.20.000229
ORF1ab/nsp1102E102EgaGgaA2525AY.40.000039
ORF1ab/nsp1102E102EgaGgaA1818AY.30.000179
ORF1ab/nsp1102E102EgaGgaA1818B.10.000165
ORF1ab/nsp1102E102EgaGgaA1717AY.430.000075
ORF1ab/nsp1102E102EgaGgaA1616AY.750.000896
ORF1ab/nsp1102E102EgaGgaA1515AY.1140.003467
ORF1ab/nsp1102E102EgaGgaA1313B.1.617.20.000049
ORF1ab/nsp1102E102EgaGgaA99P.1.120.004356
ORF1ab/nsp1102E102EgaGgaA66B.1.258.170.000624
ORF1ab/nsp1102E102EgaGgaA55B.1.10.000091
ORF1ab/nsp1102E102EgaGgaA44P.1.140.000191
ORF1ab/nsp1102E102EgaGgaA33AY.1030.000019
ORF1ab/nsp1102E102EgaGgaA33AY.90.000203
ORF1ab/nsp1102E102EgaGgaA33B.1.2210.000213
ORF1ab/nsp1102E102EgaGgaA33B.1.4290.000071
ORF1ab/nsp1102E102EgaGgaA33B.1.5260.000071
ORF1ab/nsp1102E102EgaGgaA33Q.80.000495
ORF1ab/nsp1102E102EgaGgaA22AY.1130.000285
ORF1ab/nsp1102E102EgaGgaA22AY.140.000176
ORF1ab/nsp1102E102EgaGgaA22AY.250.000012
ORF1ab/nsp1102E102EgaGgaA22AY.420.00008
ORF1ab/nsp1102E102EgaGgaA22B.1.1.2070.002364
ORF1ab/nsp1102E102EgaGgaA22B.1.1.3540.008772
ORF1ab/nsp1102E102EgaGgaA22B.1.2580.000133
ORF1ab/nsp1102E102EgaGgaA110.055556
ORF1ab/nsp1102E102EgaGgaA11AY.1000.000046
ORF1ab/nsp1102E102EgaGgaA11AY.1020.000027
ORF1ab/nsp1102E102EgaGgaA11AY.1190.000035
ORF1ab/nsp1102E102EgaGgaA11AY.120.2.10.000498
ORF1ab/nsp1102E102EgaGgaA11AY.16.10.00047
ORF1ab/nsp1102E102EgaGgaA11AY.230.00007
ORF1ab/nsp1102E102EgaGgaA11AY.260.000028
ORF1ab/nsp1102E102EgaGgaA11AY.3.10.000085
ORF1ab/nsp1102E102EgaGgaA11AY.330.000067
ORF1ab/nsp1102E102EgaGgaA11AY.39.10.00004
ORF1ab/nsp1102E102EgaGgaA11AY.740.000116
ORF1ab/nsp1102E102EgaGgaA11AY.75.10.00018
ORF1ab/nsp1102E102EgaGgaA11AY.980.000079
ORF1ab/nsp1102E102EgaGgaA11B.1.1.1570.000913
ORF1ab/nsp1102E102EgaGgaA11B.1.1.1700.001247
ORF1ab/nsp1102E102EgaGgaA11B.1.1.2770.000759
ORF1ab/nsp1102E102EgaGgaA11B.1.1.5190.00004
ORF1ab/nsp1102E102EgaGgaA11B.1.1770.000013
ORF1ab/nsp1102E102EgaGgaA11B.1.177.440.000519
ORF1ab/nsp1102E102EgaGgaA11B.1.258.110.000396
ORF1ab/nsp1102E102EgaGgaA11B.1.258.30.001675
ORF1ab/nsp1102E102EgaGgaA11B.1.3150.006061
ORF1ab/nsp1102E102EgaGgaA11B.1.4620.007246

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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