CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 102 & Codon = Aag

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1102E102KE102KnonsynGagAag348734390.986235569-571

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1102E102KGagAag34393487All0.000658
ORF1ab/nsp1102E102KGagAag17041704C.36.30.966534
ORF1ab/nsp1102E102KGagAag514514C.360.468124
ORF1ab/nsp1102E102KGagAag355355C.36.3.10.964674
ORF1ab/nsp1102E102KGagAag231231C.1.20.982979
ORF1ab/nsp1102E102KGagAag9494B.10.000861
ORF1ab/nsp1102E102KGagAag7777AY.40.00012
ORF1ab/nsp1102E102KGagAag5050B.1.177.190.071531
ORF1ab/nsp1102E102KGagAag3434B.1.1.971
ORF1ab/nsp1102E102KGagAag3232B.1.10.000581
ORF1ab/nsp1102E102KGagAag2828B.1.1.70.000025
ORF1ab/nsp1102E102KGagAag2828B.1.6090.013423
ORF1ab/nsp1102E102KGagAag2121B.1.5400.203883
ORF1ab/nsp1102E102KGagAag2121B.1.5960.00183
ORF1ab/nsp1102E102KGagAag1818B.1.214.20.010791
ORF1ab/nsp1102E102KGagAag1717B.1.2430.001183
ORF1ab/nsp1102E102KGagAag1616B.1.5880.014559
ORF1ab/nsp1102E102KGagAag1313A0.005031
ORF1ab/nsp1102E102KGagAag1313B.1.3670.010301
ORF1ab/nsp1102E102KGagAag1111B.1.20.000097
ORF1ab/nsp1102E102KGagAag77B.1.1.4020.077778
ORF1ab/nsp1102E102KGagAag77C.350.005418
ORF1ab/nsp1102E102KGagAag66A.300.857143
ORF1ab/nsp1102E102KGagAag66C.170.333333
ORF1ab/nsp1102E102KGagAag55B.1.1770.000066
ORF1ab/nsp1102E102KGagAag55B.1.230.030303
ORF1ab/nsp1102E102KGagAag55B.1.5820.002453
ORF1ab/nsp1102E102KGagAag55C.390.09434
ORF1ab/nsp1102E102KGagAag55P.1.140.000239
ORF1ab/nsp1102E102KGagAag44AY.430.000018
ORF1ab/nsp1102E102KGagAag44AY.46.60.000289
ORF1ab/nsp1102E102KGagAag44AY.9.20.000147
ORF1ab/nsp1102E102KGagAag44B.1.1.2940.005063
ORF1ab/nsp1102E102KGagAag44B.1.1.5190.000159
ORF1ab/nsp1102E102KGagAag34B.1.1600.000094
ORF1ab/nsp1102E102KGagAag44C.140.017316
ORF1ab/nsp1102E102KGagAag33AY.1020.00008
ORF1ab/nsp1102E102KGagAag33AY.1030.000019
ORF1ab/nsp1102E102KGagAag33AY.200.000117
ORF1ab/nsp1102E102KGagAag33AY.99.20.000276
ORF1ab/nsp1102E102KGagAag33B0.000383
ORF1ab/nsp1102E102KGagAag33B.1.1.10.00098
ORF1ab/nsp1102E102KGagAag33B.1.1.3060.001315
ORF1ab/nsp1102E102KGagAag33B.1.617.20.000011
ORF1ab/nsp1102E102KGagAag22AY.1180.000125
ORF1ab/nsp1102E102KGagAag22AY.250.000012
ORF1ab/nsp1102E102KGagAag22AY.39.10.000079
ORF1ab/nsp1102E102KGagAag22B.1.1.1980.002937
ORF1ab/nsp1102E102KGagAag22B.1.1.2650.006309
ORF1ab/nsp1102E102KGagAag22B.1.2580.000133
ORF1ab/nsp1102E102KGagAag22B.1.390.007812
ORF1ab/nsp1102E102KGagAag22B.1.3960.001411
ORF1ab/nsp1102E102KGagAag22B.1.5540.008811
ORF1ab/nsp1102E102KGagAag22B.1.810.042553
ORF1ab/nsp1102E102KGagAag22C.10.004785
ORF1ab/nsp1102E102KGagAag22C.370.000232
ORF1ab/nsp1102E102KGagAag11A.2.50.000499
ORF1ab/nsp1102E102KGagAag11A.23.10.000704
ORF1ab/nsp1102E102KGagAag11A.250.018182
ORF1ab/nsp1102E102KGagAag11AY.1000.000046
ORF1ab/nsp1102E102KGagAag11AY.230.00007
ORF1ab/nsp1102E102KGagAag11AY.260.000028
ORF1ab/nsp1102E102KGagAag11AY.290.000016
ORF1ab/nsp1102E102KGagAag11AY.30.00001
ORF1ab/nsp1102E102KGagAag11AY.4.40.000409
ORF1ab/nsp1102E102KGagAag11AY.420.00004
ORF1ab/nsp1102E102KGagAag11AY.450.000122
ORF1ab/nsp1102E102KGagAag11AY.470.000031
ORF1ab/nsp1102E102KGagAag11AY.50.000021
ORF1ab/nsp1102E102KGagAag11AY.75.10.00018
ORF1ab/nsp1102E102KGagAag11AY.910.00073
ORF1ab/nsp1102E102KGagAag11B.1.1.2690.001353
ORF1ab/nsp1102E102KGagAag11B.1.1.3720.000689
ORF1ab/nsp1102E102KGagAag11B.1.1.3800.009804
ORF1ab/nsp1102E102KGagAag11B.1.1.4640.001473
ORF1ab/nsp1102E102KGagAag11B.1.1490.003425
ORF1ab/nsp1102E102KGagAag11B.1.177.580.001332
ORF1ab/nsp1102E102KGagAag11B.1.258.170.000104
ORF1ab/nsp1102E102KGagAag11B.1.3490.000715
ORF1ab/nsp1102E102KGagAag11B.1.36.80.001
ORF1ab/nsp1102E102KGagAag11B.1.3750.00082
ORF1ab/nsp1102E102KGagAag11B.1.4270.00005
ORF1ab/nsp1102E102KGagAag11B.1.4290.000024
ORF1ab/nsp1102E102KGagAag11B.1.5610.000397
ORF1ab/nsp1102E102KGagAag11B.1.5760.000907
ORF1ab/nsp1102E102KGagAag11B.1.5950.000261
ORF1ab/nsp1102E102KGagAag11B.1.6230.000536
ORF1ab/nsp1102E102KGagAag11B.1.6280.000352
ORF1ab/nsp1102E102KGagAag11B.400.000364
ORF1ab/nsp1102E102KGagAag11C.160.00106
ORF1ab/nsp1102E102KGagAag11Q.10.000126
ORF1ab/nsp1102E102KGagAag11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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