CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 102 | E102K | E102K | nonsyn | Gag | Aag | 3487 | 3439 | 0.986235 | 569-571 |
ORF1ab/nsp1 | 102 | E102K | E102K | nonsyn | GaG | AaA | 3487 | 48 | 0.0137654 | 569-571 |
ORF1ab/nsp1 | 102 | E102E | E102E | syn | gaG | gaA | 1380 | 1380 | 1 | 569-571 |
ORF1ab/nsp1 | 102 | E102Q | E102Q | nonsyn | Gag | Cag | 359 | 359 | 1 | 569-571 |
ORF1ab/nsp1 | 102 | E102G | E102G | nonsyn | gAg | gGg | 206 | 205 | 0.995146 | 569-571 |
ORF1ab/nsp1 | 102 | E102G | E102G | nonsyn | gAG | gGA | 206 | 1 | 0.00485437 | 569-571 |
ORF1ab/nsp1 | 102 | E102V | E102V | nonsyn | gAg | gTg | 191 | 191 | 1 | 569-571 |
ORF1ab/nsp1 | 102 | E102D | E102D | nonsyn | gaG | gaT | 174 | 170 | 0.977012 | 569-571 |
ORF1ab/nsp1 | 102 | E102D | E102D | nonsyn | gaG | gaC | 174 | 4 | 0.0229885 | 569-571 |
ORF1ab/nsp1 | 102 | E102A | E102A | nonsyn | gAg | gCg | 104 | 103 | 0.990385 | 569-571 |
ORF1ab/nsp1 | 102 | E102A | E102A | nonsyn | gAG | gCT | 104 | 1 | 0.00961538 | 569-571 |
ORF1ab/nsp1 | 102 | E102del | E102del | del | GAG | --- | 67 | 67 | 1 | 569-571 |
ORF1ab/nsp1 | 102 | E102X | E102X | nonsyn | Gag | Tag | 10 | 7 | 0.7 | 569-571 |
ORF1ab/nsp1 | 102 | E102X | E102X | nonsyn | GAG | TGA | 10 | 2 | 0.2 | 569-571 |
ORF1ab/nsp1 | 102 | E102X | E102X | nonsyn | GaG | TaA | 10 | 1 | 0.1 | 569-571 |
ORF1ab/nsp1 | 102 | E102W | E102W | nonsyn | GAg | TGg | 1 | 1 | 1 | 569-571 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3439 | 3487 | All | 0.000658 |
ORF1ab/nsp1 | 102 | E102K | GaG | AaA | 48 | 3487 | All | 0.000009 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1704 | 1704 | C.36.3 | 0.966534 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1380 | 1380 | All | 0.000264 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 748 | 748 | B.1.160 | 0.023328 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 514 | 514 | C.36 | 0.468124 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 359 | 359 | All | 0.000069 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 355 | 355 | C.36.3.1 | 0.964674 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 330 | 330 | B.1 | 0.003023 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 231 | 231 | C.1.2 | 0.982979 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 216 | 216 | P.1 | 0.003403 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 205 | 206 | All | 0.000039 |
ORF1ab/nsp1 | 102 | E102G | gAG | gGA | 1 | 206 | All | 0 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 191 | 191 | All | 0.000037 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 170 | 174 | All | 0.000033 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaC | 4 | 174 | All | 0.000001 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 110 | 110 | AY.4.5 | 0.011824 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 103 | 104 | All | 0.00002 |
ORF1ab/nsp1 | 102 | E102A | gAG | gCT | 1 | 104 | All | 0 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 94 | 94 | B.1 | 0.000861 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 81 | 81 | AY.36 | 0.012005 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 79 | 79 | B.1.1.7 | 0.000071 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 77 | 77 | AY.4 | 0.00012 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 69 | 69 | B.1.160.20 | 0.616071 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 67 | 67 | All | 0.000013 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 50 | 50 | B.1.177.19 | 0.071531 |
ORF1ab/nsp1 | 102 | E102K | GaG | AaA | 47 | 47 | B.1.160.21 | 0.959184 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 44 | 44 | AY.103 | 0.000273 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 36 | 36 | AY.32 | 0.019169 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 34 | 34 | B.1.1.306 | 0.014906 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 34 | 34 | B.1.1.97 | 1 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 32 | 32 | AY.44 | 0.000195 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 32 | 32 | B.1.1 | 0.000581 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 28 | 28 | B.1.609 | 0.013423 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 26 | 26 | B.1.2 | 0.000229 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 24 | 24 | B.1.526 | 0.000564 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 21 | 21 | B.1.540 | 0.203883 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 21 | 21 | B.1.596 | 0.00183 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 18 | 18 | B.1.214.2 | 0.010791 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 17 | 17 | B.1.243 | 0.001183 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 16 | 16 | AY.75 | 0.000896 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 16 | 16 | B.1.1.526 | 0.056738 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 16 | 16 | B.1.588 | 0.014559 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 15 | 15 | AY.114 | 0.003467 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 13 | 13 | A | 0.005031 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 13 | 13 | B.1.367 | 0.010301 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp1 | 102 | E102X | Gag | Tag | 7 | 10 | All | 0.000001 |
ORF1ab/nsp1 | 102 | E102X | GAG | TGA | 2 | 10 | All | 0 |
ORF1ab/nsp1 | 102 | E102X | GaG | TaA | 1 | 10 | All | 0 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 9 | 9 | P.1.12 | 0.004356 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 7 | 7 | B.1.1.402 | 0.077778 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 6 | 7 | B.1.617.2 | 0.000023 |
ORF1ab/nsp1 | 102 | E102A | gAG | gCT | 1 | 7 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 7 | 7 | C.35 | 0.005418 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 6 | 6 | A.30 | 0.857143 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 6 | 6 | AY.56 | 0.009631 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 6 | 6 | C.17 | 0.333333 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 5 | 5 | AY.80 | 0.005643 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 5 | 5 | B.1.23 | 0.030303 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 5 | 5 | C.39 | 0.09434 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 4 | B.1.160 | 0.000094 |
ORF1ab/nsp1 | 102 | E102K | GaG | AaA | 1 | 4 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 4 | 4 | C.14 | 0.017316 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp1 | 102 | E102X | GaG | TaA | 1 | 3 | 0.055556 | |
ORF1ab/nsp1 | 102 | E102X | GAG | TGA | 1 | 3 | 0.055556 | |
ORF1ab/nsp1 | 102 | E102X | Gag | Tag | 1 | 3 | 0.055556 | |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 3 | B | 0.000383 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 2 | 0.055556 | |
ORF1ab/nsp1 | 102 | E102G | gAG | gGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | B.1.39 | 0.007812 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | B.1.554 | 0.008811 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 2 | 2 | B.1.638 | 0.105263 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 102 | E102W | GAg | TGg | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp1 | 102 | E102W | GAg | TGg | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 102 | E102X | Gag | Tag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 102 | E102X | Gag | Tag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.1.380 | 0.009804 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 102 | E102X | Gag | Tag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 102 | E102X | Gag | Tag | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 102 | E102X | Gag | Tag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 1 | 1 | B.1.302 | 0.013333 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 102 | E102E | gaG | gaA | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 102 | E102X | GAG | TGA | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 102 | E102G | gAg | gGg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 102 | E102Q | Gag | Cag | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp1 | 102 | E102D | gaG | gaT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp1 | 102 | E102X | Gag | Tag | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp1 | 102 | E102del | GAG | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 102 | E102A | gAg | gCg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 102 | E102V | gAg | gTg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp1 | 102 | E102K | Gag | Aag | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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