CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF10 | 30 | V30L | nonsyn | Gta | Tta | 177483 | 177133 | 0.998028 | 29645-29647 | |
ORF10 | 30 | V30L | nonsyn | Gta | Cta | 177483 | 349 | 0.00196639 | 29645-29647 | |
ORF10 | 30 | V30L | nonsyn | GtA | CtT | 177483 | 1 | 0.00000563434 | 29645-29647 |
Details of the mutation V30L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF10 | 30 | V30L | Gta | Tta | 177133 | 177483 | All | 0.033879 |
ORF10 | 30 | V30L | Gta | Cta | 349 | 177483 | All | 0.000067 |
ORF10 | 30 | V30L | GtA | CtT | 1 | 177483 | All | 0 |
ORF10 | 30 | V30L | Gta | Tta | 73804 | 73807 | B.1.177 | 0.971821 |
ORF10 | 30 | V30L | Gta | Cta | 3 | 73807 | B.1.177 | 0.00004 |
ORF10 | 30 | V30L | Gta | Tta | 12797 | 12797 | B.1.177.21 | 0.978588 |
ORF10 | 30 | V30L | Gta | Tta | 6534 | 6534 | B.1.177.12 | 0.991201 |
ORF10 | 30 | V30L | Gta | Tta | 5959 | 5959 | B.1.177.7 | 0.982361 |
ORF10 | 30 | V30L | Gta | Tta | 5195 | 5195 | B.1.177.81 | 0.983529 |
ORF10 | 30 | V30L | Gta | Tta | 5058 | 5058 | B.1.177.86 | 0.927903 |
ORF10 | 30 | V30L | Gta | Tta | 4706 | 4706 | B.1.177.4 | 0.993246 |
ORF10 | 30 | V30L | Gta | Tta | 4287 | 4287 | B.1.177.60 | 0.936435 |
ORF10 | 30 | V30L | Gta | Tta | 3542 | 3542 | B.1.177.57 | 0.995223 |
ORF10 | 30 | V30L | Gta | Tta | 2611 | 2611 | B.1.177.45 | 0.995425 |
ORF10 | 30 | V30L | Gta | Tta | 1872 | 2070 | AY.4 | 0.002914 |
ORF10 | 30 | V30L | Gta | Cta | 198 | 2070 | AY.4 | 0.000308 |
ORF10 | 30 | V30L | Gta | Tta | 1943 | 1943 | B.1.177.82 | 0.927446 |
ORF10 | 30 | V30L | Gta | Tta | 1818 | 1818 | B.1.177.44 | 0.943435 |
ORF10 | 30 | V30L | Gta | Tta | 1636 | 1636 | B.1.177.54 | 0.992116 |
ORF10 | 30 | V30L | Gta | Tta | 1577 | 1577 | B.1.177.15 | 0.994953 |
ORF10 | 30 | V30L | Gta | Tta | 1503 | 1503 | B.1.177.65 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 1494 | 1494 | B.1.177.16 | 0.992691 |
ORF10 | 30 | V30L | Gta | Tta | 1486 | 1486 | B.1.177.56 | 0.991989 |
ORF10 | 30 | V30L | Gta | Tta | 1446 | 1446 | B.1.177.35 | 0.999309 |
ORF10 | 30 | V30L | Gta | Tta | 1359 | 1359 | B.1.177.87 | 0.989083 |
ORF10 | 30 | V30L | Gta | Tta | 1327 | 1327 | B.1.177.77 | 0.963689 |
ORF10 | 30 | V30L | Gta | Tta | 1323 | 1323 | B.1.177.8 | 0.995485 |
ORF10 | 30 | V30L | Gta | Tta | 1278 | 1283 | B.1 | 0.011706 |
ORF10 | 30 | V30L | Gta | Cta | 4 | 1283 | B.1 | 0.000037 |
ORF10 | 30 | V30L | GtA | CtT | 1 | 1283 | B.1 | 0.000009 |
ORF10 | 30 | V30L | Gta | Tta | 1269 | 1269 | B.1.177.73 | 0.718573 |
ORF10 | 30 | V30L | Gta | Tta | 1207 | 1207 | B.1.177.17 | 0.990969 |
ORF10 | 30 | V30L | Gta | Tta | 1121 | 1121 | B.1.177.10 | 0.984197 |
ORF10 | 30 | V30L | Gta | Tta | 1009 | 1009 | B.1.177.6 | 0.985352 |
ORF10 | 30 | V30L | Gta | Tta | 979 | 979 | B.1.177.46 | 0.89899 |
ORF10 | 30 | V30L | Gta | Tta | 945 | 945 | B.1.177.75 | 0.983351 |
ORF10 | 30 | V30L | Gta | Tta | 912 | 912 | B.1.177.42 | 0.815742 |
ORF10 | 30 | V30L | Gta | Tta | 852 | 852 | B.1.177.18 | 0.988399 |
ORF10 | 30 | V30L | Gta | Tta | 826 | 826 | B.1.177.62 | 0.984505 |
ORF10 | 30 | V30L | Gta | Tta | 799 | 799 | B.1.177.5 | 0.992547 |
ORF10 | 30 | V30L | Gta | Tta | 760 | 760 | B.1.177.24 | 0.984456 |
ORF10 | 30 | V30L | Gta | Tta | 746 | 746 | B.1.177.9 | 0.993342 |
ORF10 | 30 | V30L | Gta | Tta | 743 | 743 | B.1.177.58 | 0.989348 |
ORF10 | 30 | V30L | Gta | Tta | 735 | 735 | W.4 | 0.993243 |
ORF10 | 30 | V30L | Gta | Tta | 734 | 734 | B.1.177.32 | 0.990553 |
ORF10 | 30 | V30L | Gta | Tta | 697 | 697 | B.1.177.19 | 0.997139 |
ORF10 | 30 | V30L | Gta | Tta | 673 | 673 | B.1.177.69 | 0.998516 |
ORF10 | 30 | V30L | Gta | Tta | 651 | 651 | B.1.177.20 | 0.98786 |
ORF10 | 30 | V30L | Gta | Tta | 642 | 642 | B.1.177.43 | 0.948301 |
ORF10 | 30 | V30L | Gta | Tta | 635 | 635 | B.1.177.83 | 0.940741 |
ORF10 | 30 | V30L | Gta | Tta | 606 | 606 | B.1.177.33 | 0.996711 |
ORF10 | 30 | V30L | Gta | Tta | 573 | 595 | B.1.1.7 | 0.000513 |
ORF10 | 30 | V30L | Gta | Cta | 22 | 595 | B.1.1.7 | 0.00002 |
ORF10 | 30 | V30L | Gta | Tta | 588 | 588 | B.1.177.11 | 0.998302 |
ORF10 | 30 | V30L | Gta | Tta | 549 | 549 | B.1.177.52 | 0.964851 |
ORF10 | 30 | V30L | Gta | Tta | 508 | 522 | AY.103 | 0.003154 |
ORF10 | 30 | V30L | Gta | Cta | 14 | 522 | AY.103 | 0.000087 |
ORF10 | 30 | V30L | Gta | Tta | 483 | 483 | B.1.177.80 | 0.923518 |
ORF10 | 30 | V30L | Gta | Tta | 427 | 427 | B.1.177.55 | 0.995338 |
ORF10 | 30 | V30L | Gta | Tta | 413 | 413 | B.1.177.53 | 0.988038 |
ORF10 | 30 | V30L | Gta | Tta | 398 | 398 | B.1.177.30 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 397 | 397 | B.1.177.79 | 0.929742 |
ORF10 | 30 | V30L | Gta | Tta | 390 | 390 | B.1.177.76 | 0.972569 |
ORF10 | 30 | V30L | Gta | Tta | 376 | 376 | B.1.177.41 | 0.94 |
ORF10 | 30 | V30L | Gta | Tta | 367 | 367 | B.1.177.63 | 0.991892 |
ORF10 | 30 | V30L | Gta | Tta | 343 | 343 | Z.1 | 0.991329 |
ORF10 | 30 | V30L | Gta | Tta | 318 | 318 | B.1.177.48 | 0.99375 |
ORF10 | 30 | V30L | Gta | Tta | 303 | 303 | B.1.177.23 | 0.980583 |
ORF10 | 30 | V30L | Gta | Tta | 297 | 298 | AY.113 | 0.04229 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 298 | AY.113 | 0.000142 |
ORF10 | 30 | V30L | Gta | Tta | 292 | 292 | B.1.177.72 | 0.989831 |
ORF10 | 30 | V30L | Gta | Tta | 253 | 253 | U.3 | 0.976834 |
ORF10 | 30 | V30L | Gta | Tta | 234 | 248 | B.1.617.2 | 0.000881 |
ORF10 | 30 | V30L | Gta | Cta | 14 | 248 | B.1.617.2 | 0.000053 |
ORF10 | 30 | V30L | Gta | Tta | 220 | 220 | B.1.177.2 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 219 | 219 | B.1.177.51 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 213 | 213 | B.1.1.240 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 208 | 208 | B.1.177.50 | 0.976526 |
ORF10 | 30 | V30L | Gta | Tta | 202 | 202 | W.2 | 0.975845 |
ORF10 | 30 | V30L | Gta | Tta | 190 | 190 | W.3 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 188 | 188 | B.1.177.40 | 0.969072 |
ORF10 | 30 | V30L | Gta | Tta | 179 | 184 | B.1.1 | 0.003247 |
ORF10 | 30 | V30L | Gta | Cta | 5 | 184 | B.1.1 | 0.000091 |
ORF10 | 30 | V30L | Gta | Tta | 181 | 181 | B.1.177.85 | 0.983696 |
ORF10 | 30 | V30L | Gta | Tta | 165 | 165 | B.1.177.70 | 0.976331 |
ORF10 | 30 | V30L | Gta | Tta | 164 | 164 | B.1.177.14 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 150 | 150 | B.1.177.84 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 143 | 143 | B.1.177.26 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 137 | 137 | AA.1 | 0.992754 |
ORF10 | 30 | V30L | Gta | Tta | 133 | 133 | B.1.177.28 | 0.985185 |
ORF10 | 30 | V30L | Gta | Tta | 131 | 131 | B.1.177.3 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 130 | 130 | AA.2 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 122 | 126 | AY.43 | 0.000541 |
ORF10 | 30 | V30L | Gta | Cta | 4 | 126 | AY.43 | 0.000018 |
ORF10 | 30 | V30L | Gta | Tta | 119 | 119 | B.1.160 | 0.003711 |
ORF10 | 30 | V30L | Gta | Tta | 111 | 113 | B.1.221 | 0.007885 |
ORF10 | 30 | V30L | Gta | Cta | 2 | 113 | B.1.221 | 0.000142 |
ORF10 | 30 | V30L | Gta | Tta | 113 | 113 | W.1 | 0.982609 |
ORF10 | 30 | V30L | Gta | Tta | 112 | 112 | B.1.177.67 | 0.854962 |
ORF10 | 30 | V30L | Gta | Tta | 110 | 110 | AA.4 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 109 | 109 | AA.7 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 109 | 109 | U.2 | 0.95614 |
ORF10 | 30 | V30L | Gta | Tta | 106 | 106 | AY.121 | 0.014344 |
ORF10 | 30 | V30L | Gta | Tta | 105 | 105 | B.1.177.27 | 0.990566 |
ORF10 | 30 | V30L | Gta | Tta | 104 | 104 | B.1.160.30 | 0.309524 |
ORF10 | 30 | V30L | Gta | Tta | 102 | 102 | B.1.177.78 | 0.990291 |
ORF10 | 30 | V30L | Gta | Tta | 99 | 99 | B.1.177.71 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 95 | 95 | B.1.177.38 | 0.989583 |
ORF10 | 30 | V30L | Gta | Tta | 92 | 92 | B.1.619 | 0.080139 |
ORF10 | 30 | V30L | Gta | Tta | 74 | 82 | B.1.2 | 0.000652 |
ORF10 | 30 | V30L | Gta | Cta | 8 | 82 | B.1.2 | 0.00007 |
ORF10 | 30 | V30L | Gta | Tta | 81 | 81 | B.1.177.88 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 78 | 78 | U.1 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 77 | 77 | B.1.177.47 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 77 | 77 | Y.1 | 0.987179 |
ORF10 | 30 | V30L | Gta | Tta | 74 | 76 | AY.25 | 0.000445 |
ORF10 | 30 | V30L | Gta | Cta | 2 | 76 | AY.25 | 0.000012 |
ORF10 | 30 | V30L | Gta | Tta | 70 | 70 | B.1.1.519 | 0.00278 |
ORF10 | 30 | V30L | Gta | Tta | 67 | 67 | B.1.177.25 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 65 | 65 | AY.44 | 0.000396 |
ORF10 | 30 | V30L | Gta | Tta | 65 | 65 | B.1.177.74 | 0.984848 |
ORF10 | 30 | V30L | Gta | Tta | 64 | 64 | B.1.177.39 | 0.984615 |
ORF10 | 30 | V30L | Gta | Tta | 64 | 64 | P.1 | 0.001008 |
ORF10 | 30 | V30L | Gta | Tta | 62 | 62 | AA.5 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 62 | 62 | AA.6 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 62 | 62 | B.1.177.36 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 59 | 59 | AY.46.6 | 0.00426 |
ORF10 | 30 | V30L | Gta | Tta | 59 | 59 | B.1.177.59 | 0.951613 |
ORF10 | 30 | V30L | Gta | Tta | 54 | 54 | AY.14 | 0.004753 |
ORF10 | 30 | V30L | Gta | Tta | 54 | 54 | B.1.258 | 0.003594 |
ORF10 | 30 | V30L | Gta | Tta | 51 | 51 | B.1.177.68 | 0.772727 |
ORF10 | 30 | V30L | Gta | Tta | 45 | 45 | AA.8 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 44 | 44 | V.1 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 42 | 43 | AY.39 | 0.001038 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 43 | AY.39 | 0.000025 |
ORF10 | 30 | V30L | Gta | Tta | 41 | 41 | B.1.177.89 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 37 | 37 | AA.3 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 36 | 37 | AY.5 | 0.000743 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 37 | AY.5 | 0.000021 |
ORF10 | 30 | V30L | Gta | Tta | 37 | 37 | B.1.177.37 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 34 | 36 | B.1.526 | 0.000799 |
ORF10 | 30 | V30L | Gta | Cta | 2 | 36 | B.1.526 | 0.000047 |
ORF10 | 30 | V30L | Gta | Tta | 34 | 34 | B.1.243 | 0.002366 |
ORF10 | 30 | V30L | Gta | Tta | 25 | 32 | AY.3 | 0.000249 |
ORF10 | 30 | V30L | Gta | Cta | 7 | 32 | AY.3 | 0.00007 |
ORF10 | 30 | V30L | Gta | Tta | 31 | 31 | B | 0.003962 |
ORF10 | 30 | V30L | Gta | Tta | 31 | 31 | B.1.177.31 | 0.356322 |
ORF10 | 30 | V30L | Gta | Tta | 31 | 31 | B.1.609 | 0.014861 |
ORF10 | 30 | V30L | Gta | Tta | 31 | 31 | V.2 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 30 | 30 | B.1.1.50 | 0.020367 |
ORF10 | 30 | V30L | Gta | Tta | 30 | 30 | B.1.160.20 | 0.267857 |
ORF10 | 30 | V30L | Gta | Tta | 20 | 28 | AY.61 | 0.002096 |
ORF10 | 30 | V30L | Gta | Cta | 8 | 28 | AY.61 | 0.000838 |
ORF10 | 30 | V30L | Gta | Tta | 28 | 28 | B.1.36 | 0.004085 |
ORF10 | 30 | V30L | Gta | Tta | 28 | 28 | P.1.16 | 0.010475 |
ORF10 | 30 | V30L | Gta | Tta | 27 | 27 | P.1.17 | 0.004368 |
ORF10 | 30 | V30L | Gta | Tta | 24 | 24 | B.1.177.49 | 0.888889 |
ORF10 | 30 | V30L | Gta | Tta | 24 | 24 | B.1.177.66 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 19 | 23 | AY.102 | 0.000504 |
ORF10 | 30 | V30L | Gta | Cta | 4 | 23 | AY.102 | 0.000106 |
ORF10 | 30 | V30L | Gta | Tta | 23 | 23 | B.1.177.61 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 22 | 22 | AJ.1 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 19 | 20 | AY.100 | 0.000874 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 20 | AY.100 | 0.000046 |
ORF10 | 30 | V30L | Gta | Tta | 20 | 20 | AY.4.2 | 0.000434 |
ORF10 | 30 | V30L | Gta | Tta | 20 | 20 | AY.99.2 | 0.001843 |
ORF10 | 30 | V30L | Gta | Tta | 20 | 20 | B.1.351 | 0.000595 |
ORF10 | 30 | V30L | Gta | Tta | 20 | 20 | B.1.396 | 0.014114 |
ORF10 | 30 | V30L | Gta | Tta | 18 | 19 | B.1.1.214 | 0.000998 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 19 | B.1.1.214 | 0.000055 |
ORF10 | 30 | V30L | Gta | Tta | 19 | 19 | B.1.177.34 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 16 | 18 | AY.42 | 0.000644 |
ORF10 | 30 | V30L | Gta | Cta | 2 | 18 | AY.42 | 0.00008 |
ORF10 | 30 | V30L | Gta | Tta | 18 | 18 | B.1.1.39 | 0.009174 |
ORF10 | 30 | V30L | Gta | Tta | 17 | 17 | B.1.1.306 | 0.007453 |
ORF10 | 30 | V30L | Gta | Tta | 15 | 15 | AY.20 | 0.000583 |
ORF10 | 30 | V30L | Gta | Tta | 10 | 15 | AY.29 | 0.000158 |
ORF10 | 30 | V30L | Gta | Cta | 5 | 15 | AY.29 | 0.000079 |
ORF10 | 30 | V30L | Gta | Tta | 15 | 15 | AY.33 | 0.001002 |
ORF10 | 30 | V30L | Gta | Tta | 15 | 15 | B.1.177.29 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 12 | 13 | AY.117 | 0.001014 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 13 | AY.117 | 0.000085 |
ORF10 | 30 | V30L | Gta | Tta | 13 | 13 | AY.23 | 0.000907 |
ORF10 | 30 | V30L | Gta | Tta | 13 | 13 | B.1.596 | 0.001133 |
ORF10 | 30 | V30L | Gta | Tta | 12 | 12 | B.1.416.1 | 0.01875 |
ORF10 | 30 | V30L | Gta | Tta | 12 | 12 | B.1.429 | 0.000282 |
ORF10 | 30 | V30L | Gta | Tta | 11 | 11 | B.1.177.64 | 1 |
ORF10 | 30 | V30L | Gta | Tta | 10 | 10 | B.1.36.39 | 0.022173 |
ORF10 | 30 | V30L | Gta | Tta | 9 | 9 | A | 0.003483 |
ORF10 | 30 | V30L | Gta | Tta | 9 | 9 | AY.13 | 0.001449 |
ORF10 | 30 | V30L | Gta | Tta | 9 | 9 | B.1.1.311 | 0.003223 |
ORF10 | 30 | V30L | Gta | Tta | 8 | 8 | AY.6 | 0.000329 |
ORF10 | 30 | V30L | Gta | Cta | 5 | 8 | AY.9.2 | 0.000184 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 8 | AY.9.2 | 0.00011 |
ORF10 | 30 | V30L | Gta | Tta | 8 | 8 | AY.98 | 0.000632 |
ORF10 | 30 | V30L | Gta | Tta | 8 | 8 | B.1.160.32 | 0.034335 |
ORF10 | 30 | V30L | Gta | Tta | 8 | 8 | B.1.236 | 0.016427 |
ORF10 | 30 | V30L | Gta | Tta | 8 | 8 | B.1.389 | 0.008016 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 7 | AY.120 | 0.000223 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 7 | AY.120 | 0.000037 |
ORF10 | 30 | V30L | Gta | Tta | 7 | 7 | AY.47 | 0.000218 |
ORF10 | 30 | V30L | Gta | Tta | 7 | 7 | B.1.1.222 | 0.001428 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 7 | B.1.621 | 0.000531 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 7 | B.1.621 | 0.000089 |
ORF10 | 30 | V30L | Gta | Tta | 7 | 7 | B.4.1 | 0.132075 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | AY.10 | 0.00318 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | AY.111 | 0.001099 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | AY.16 | 0.002278 |
ORF10 | 30 | V30L | Gta | Cta | 3 | 6 | AY.26 | 0.000085 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 6 | AY.26 | 0.000085 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | AY.29.1 | 0.001323 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | AY.48 | 0.002791 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | AY.73 | 0.003992 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | AY.98.1 | 0.000291 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | B.1.1.218 | 0.046154 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | B.1.1.37 | 0.001157 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | B.1.1.70 | 0.002046 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | B.1.260 | 0.020067 |
ORF10 | 30 | V30L | Gta | Tta | 6 | 6 | P.1.14 | 0.000287 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 6 | P.2 | 0.000933 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 6 | P.2 | 0.000187 |
ORF10 | 30 | V30L | Gta | Cta | 5 | 5 | AY.1 | 0.001979 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 5 | AY.3.1 | 0.000341 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 5 | AY.3.1 | 0.000085 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | AY.30 | 0.001979 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | AY.46 | 0.00052 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | AY.7 | 0.00098 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 5 | AY.75 | 0.000224 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 5 | AY.75 | 0.000056 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | B.1.1.216 | 0.004452 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | B.1.1.348 | 0.003981 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | B.1.1.362 | 0.02809 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | B.1.258.11 | 0.001982 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | B.1.375 | 0.004098 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | B.1.473 | 0.096154 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | B.1.509 | 0.004329 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | C.37 | 0.00058 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 5 | D.2 | 0.0003 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 5 | D.2 | 0.000075 |
ORF10 | 30 | V30L | Gta | Tta | 5 | 5 | Q.1 | 0.000632 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | A.2.5 | 0.001996 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | AY.34.1 | 0.00204 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | AY.36 | 0.000593 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | AY.54 | 0.000381 |
ORF10 | 30 | V30L | Gta | Cta | 4 | 4 | AY.75.1 | 0.000721 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | AY.95 | 0.003044 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 4 | B.1.1.28 | 0.000934 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 4 | B.1.1.28 | 0.000311 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | B.1.1.33 | 0.001684 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | B.1.1.515 | 0.08 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | B.1.222 | 0.006768 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | B.1.541 | 0.017699 |
ORF10 | 30 | V30L | Gta | Tta | 4 | 4 | Q.7 | 0.004444 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | AY.119 | 0.000106 |
ORF10 | 30 | V30L | Gta | Cta | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | AY.68 | 0.000821 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | AY.81 | 0.005976 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | AY.88 | 0.002653 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | AY.9 | 0.000203 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 3 | AY.9.1 | 0.000167 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 3 | AY.9.1 | 0.000084 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.1.163 | 0.022901 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.1.170 | 0.003741 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.1.207 | 0.003546 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.1.25 | 0.001706 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.1.282 | 0.034884 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 3 | B.1.240 | 0.000431 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 3 | B.1.240 | 0.000216 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.311 | 0.000824 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.336 | 0.007317 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.36.17 | 0.001482 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.404 | 0.003906 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.1.427 | 0.000151 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.29 | 0.010526 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | B.3 | 0.002492 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | C.36.3 | 0.001702 |
ORF10 | 30 | V30L | Gta | Tta | 3 | 3 | P.1.7 | 0.000958 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.106 | 0.00067 |
ORF10 | 30 | V30L | Gta | Cta | 2 | 2 | AY.109 | 0.001479 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.118 | 0.000125 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.120.1 | 0.000642 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.24 | 0.000862 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.28 | 0.003781 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.39.1 | 0.000079 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.4.5 | 0.000215 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.50 | 0.001599 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 2 | AY.69 | 0.000187 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 2 | AY.69 | 0.000187 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 2 | AY.71 | 0.000475 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 2 | AY.71 | 0.000475 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | AY.87 | 0.001665 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 2 | AY.92 | 0.000287 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 2 | AY.92 | 0.000287 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.1.192 | 0.004619 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.1.280 | 0.006173 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.1.312 | 0.003824 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.1.315 | 0.016949 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.1.372 | 0.001377 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.1.47 | 0.010695 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.1.521 | 0.010695 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.157 | 0.00597 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.160.10 | 0.016129 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.160.16 | 0.001859 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.160.28 | 0.005848 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.160.9 | 0.014388 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.210 | 0.004264 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.351.3 | 0.001753 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.366 | 0.009756 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.367 | 0.001585 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.497 | 0.00063 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.525 | 0.000226 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.530 | 0.014286 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.577 | 0.001375 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.599 | 0.007299 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.617.1 | 0.000258 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.618 | 0.008065 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | B.1.621.1 | 0.001012 |
ORF10 | 30 | V30L | Gta | Cta | 2 | 2 | D.5 | 0.00995 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | P.1.10 | 0.000539 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | P.1.12 | 0.000968 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | Q.8 | 0.00033 |
ORF10 | 30 | V30L | Gta | Tta | 2 | 2 | R.1 | 0.00018 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | A.2.3 | 0.004739 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | A.21 | 0.00277 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | A.9 | 0.045455 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AE.1 | 0.011364 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AF.1 | 0.037037 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AN.1 | 0.02 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AP.1 | 0.001502 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.101 | 0.00049 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.11 | 0.001339 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.116 | 0.000287 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.116.1 | 0.000311 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 1 | AY.16.1 | 0.00047 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.17 | 0.008197 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.2 | 0.000356 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.27 | 0.000065 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.37 | 0.000316 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.40 | 0.000964 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.41 | 0.000294 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.5.4 | 0.000277 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.62 | 0.000436 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.84 | 0.000437 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.85 | 0.000427 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.89 | 0.004902 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.91 | 0.00073 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.94 | 0.000443 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | AY.96 | 0.002075 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.1 | 0.000327 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.101 | 0.01 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.141 | 0.002012 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.161 | 0.003534 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.174 | 0.003378 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.177 | 0.019231 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.189 | 0.001513 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.197 | 0.037037 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.236 | 0.006897 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.277 | 0.000759 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.284 | 0.000107 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.303 | 0.002762 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.305 | 0.003861 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.317 | 0.000412 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.322 | 0.008772 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.325 | 0.025641 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.354 | 0.004386 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.419 | 0.007407 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.433 | 0.001425 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.434 | 0.000349 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.46 | 0.004367 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.485 | 0.016667 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.486 | 0.001577 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.487 | 0.005587 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.1.63 | 0.000386 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.127 | 0.002198 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.131 | 0.008772 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.139 | 0.000733 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.140 | 0.018868 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.147 | 0.000756 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.160.24 | 0.004425 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.160.26 | 0.002421 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.160.7 | 0.002079 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.189 | 0.004292 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.221.3 | 0.000833 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.233 | 0.014085 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.258.2 | 0.004505 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.281 | 0.021739 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.284 | 0.013158 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.293 | 0.0125 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.326 | 0.007576 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.340 | 0.004292 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.349 | 0.000715 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.36.21 | 0.00216 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.36.22 | 0.001208 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.36.8 | 0.001 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.36.9 | 0.003215 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.362 | 0.001541 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.369 | 0.000285 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.408 | 0.00369 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.416 | 0.001269 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.428 | 0.00102 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.438.1 | 0.000107 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.462 | 0.007246 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.466 | 0.023256 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.466.2 | 0.000391 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.468 | 0.005714 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.469 | 0.00361 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.470 | 0.001404 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.480 | 0.002488 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 1 | B.1.499 | 0.00105 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.504 | 0.03125 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.517 | 0.000427 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.538 | 0.008065 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.540 | 0.009709 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.561 | 0.000397 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.564 | 0.000426 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.564.1 | 0.001577 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.575.1 | 0.002439 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.581 | 0.009434 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.590 | 0.004545 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.595 | 0.000261 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.597 | 0.00463 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.600 | 0.005848 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.617.3 | 0.002985 |
ORF10 | 30 | V30L | Gta | Cta | 1 | 1 | B.1.623 | 0.000536 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.625 | 0.002353 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.627 | 0.00202 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.636 | 0.006711 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.9.5 | 0.005682 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.1.94 | 0.027027 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | B.6 | 0.00091 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | C.14 | 0.004329 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | C.16 | 0.00106 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | C.30 | 0.001727 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | C.36 | 0.000911 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | K.1 | 0.02381 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | N.5 | 0.001767 |
ORF10 | 30 | V30L | Gta | Tta | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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