CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : Mut = R24P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1024R24PnonsyncGtcCt235235129627-29629

Details of the mutation R24P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1024R24PcGtcCt235235All0.000045
ORF1024R24PcGtcCt8181B.1.617.20.000305
ORF1024R24PcGtcCt6868AY.1020.001803
ORF1024R24PcGtcCt1515B.10.000137
ORF1024R24PcGtcCt1212AY.430.000053
ORF1024R24PcGtcCt1111B.1.1.2530.027569
ORF1024R24PcGtcCt66AY.40.000009
ORF1024R24PcGtcCt55AY.250.00003
ORF1024R24PcGtcCt55AY.50.000103
ORF1024R24PcGtcCt33AY.390.000074
ORF1024R24PcGtcCt33AY.440.000018
ORF1024R24PcGtcCt33AY.460.000312
ORF1024R24PcGtcCt33B.1.4270.000151
ORF1024R24PcGtcCt22AY.1170.000169
ORF1024R24PcGtcCt22AY.200.000078
ORF1024R24PcGtcCt22AY.230.000139
ORF1024R24PcGtcCt22AY.30.00002
ORF1024R24PcGtcCt22B.1.1.70.000002
ORF1024R24PcGtcCt11AY.1200.000037
ORF1024R24PcGtcCt11AY.270.000065
ORF1024R24PcGtcCt11AY.39.10.00004
ORF1024R24PcGtcCt11AY.4.20.000022
ORF1024R24PcGtcCt11AY.5.40.000277
ORF1024R24PcGtcCt11AY.740.000116
ORF1024R24PcGtcCt11AY.75.10.00018
ORF1024R24PcGtcCt11AY.9.20.000037
ORF1024R24PcGtcCt11AY.980.000079
ORF1024R24PcGtcCt11B.1.10.000018

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.