CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF10 | 24 | R24H | nonsyn | cGt | cAt | 2058 | 2058 | 1 | 29627-29629 |
Details of the mutation R24H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF10 | 24 | R24H | cGt | cAt | 2058 | 2058 | All | 0.000394 |
ORF10 | 24 | R24H | cGt | cAt | 802 | 802 | AY.43 | 0.003553 |
ORF10 | 24 | R24H | cGt | cAt | 412 | 412 | AY.106 | 0.137977 |
ORF10 | 24 | R24H | cGt | cAt | 173 | 173 | AY.103 | 0.001074 |
ORF10 | 24 | R24H | cGt | cAt | 70 | 70 | B.1.617.2 | 0.000264 |
ORF10 | 24 | R24H | cGt | cAt | 65 | 65 | B.1.1.7 | 0.000058 |
ORF10 | 24 | R24H | cGt | cAt | 59 | 59 | AY.4 | 0.000092 |
ORF10 | 24 | R24H | cGt | cAt | 41 | 41 | B.1.258 | 0.002728 |
ORF10 | 24 | R24H | cGt | cAt | 37 | 37 | B.1.36.31 | 0.064799 |
ORF10 | 24 | R24H | cGt | cAt | 35 | 35 | AY.25 | 0.000211 |
ORF10 | 24 | R24H | cGt | cAt | 27 | 27 | AY.44 | 0.000164 |
ORF10 | 24 | R24H | cGt | cAt | 20 | 20 | AY.3 | 0.000199 |
ORF10 | 24 | R24H | cGt | cAt | 19 | 19 | AY.39 | 0.00047 |
ORF10 | 24 | R24H | cGt | cAt | 19 | 19 | B.1.2 | 0.000167 |
ORF10 | 24 | R24H | cGt | cAt | 18 | 18 | AY.102 | 0.000477 |
ORF10 | 24 | R24H | cGt | cAt | 18 | 18 | AY.34 | 0.001745 |
ORF10 | 24 | R24H | cGt | cAt | 16 | 16 | B.1.637 | 0.001169 |
ORF10 | 24 | R24H | cGt | cAt | 14 | 14 | AY.29 | 0.000221 |
ORF10 | 24 | R24H | cGt | cAt | 13 | 13 | AY.100 | 0.000598 |
ORF10 | 24 | R24H | cGt | cAt | 11 | 11 | AY.6 | 0.000452 |
ORF10 | 24 | R24H | cGt | cAt | 9 | 9 | AY.120 | 0.000335 |
ORF10 | 24 | R24H | cGt | cAt | 9 | 9 | B.1 | 0.000082 |
ORF10 | 24 | R24H | cGt | cAt | 9 | 9 | B.1.587 | 0.017078 |
ORF10 | 24 | R24H | cGt | cAt | 8 | 8 | AY.5 | 0.000165 |
ORF10 | 24 | R24H | cGt | cAt | 7 | 7 | AY.36 | 0.001037 |
ORF10 | 24 | R24H | cGt | cAt | 6 | 6 | AY.118 | 0.000376 |
ORF10 | 24 | R24H | cGt | cAt | 5 | 5 | AY.16 | 0.001898 |
ORF10 | 24 | R24H | cGt | cAt | 5 | 5 | AY.26 | 0.000142 |
ORF10 | 24 | R24H | cGt | cAt | 5 | 5 | AY.42 | 0.000201 |
ORF10 | 24 | R24H | cGt | cAt | 5 | 5 | AY.47 | 0.000156 |
ORF10 | 24 | R24H | cGt | cAt | 5 | 5 | AY.98.1 | 0.000242 |
ORF10 | 24 | R24H | cGt | cAt | 5 | 5 | B.1.177 | 0.000066 |
ORF10 | 24 | R24H | cGt | cAt | 4 | 4 | AY.4.4 | 0.001637 |
ORF10 | 24 | R24H | cGt | cAt | 4 | 4 | AY.61 | 0.000419 |
ORF10 | 24 | R24H | cGt | cAt | 4 | 4 | AY.63 | 0.001547 |
ORF10 | 24 | R24H | cGt | cAt | 4 | 4 | AY.98 | 0.000316 |
ORF10 | 24 | R24H | cGt | cAt | 4 | 4 | B.1.1 | 0.000073 |
ORF10 | 24 | R24H | cGt | cAt | 4 | 4 | B.1.351 | 0.000119 |
ORF10 | 24 | R24H | cGt | cAt | 4 | 4 | B.1.560 | 0.018519 |
ORF10 | 24 | R24H | cGt | cAt | 3 | 3 | AY.114 | 0.000693 |
ORF10 | 24 | R24H | cGt | cAt | 3 | 3 | AY.119 | 0.000106 |
ORF10 | 24 | R24H | cGt | cAt | 3 | 3 | B.1.577 | 0.002062 |
ORF10 | 24 | R24H | cGt | cAt | 3 | 3 | B.1.595 | 0.000783 |
ORF10 | 24 | R24H | cGt | cAt | 3 | 3 | B.1.609 | 0.001438 |
ORF10 | 24 | R24H | cGt | cAt | 3 | 3 | P.1 | 0.000047 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | A.23.1 | 0.001408 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | AY.14 | 0.000176 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | AY.20 | 0.000078 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | AY.23 | 0.000139 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | AY.4.2 | 0.000043 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | AY.70 | 0.000417 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | AY.80 | 0.002257 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | B.1.1.216 | 0.001781 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | B.1.1.336 | 0.033333 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | B.1.480 | 0.004975 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | P.1.14 | 0.000096 |
ORF10 | 24 | R24H | cGt | cAt | 2 | 2 | Q.2 | 0.001227 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | A.2.5.3 | 0.010309 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.105 | 0.000643 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.107 | 0.000466 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.117 | 0.000085 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.121 | 0.000135 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.13 | 0.000161 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.16.1 | 0.00047 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.18 | 0.010101 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.19 | 0.00114 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.27 | 0.000065 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.30 | 0.000396 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.39.1 | 0.00004 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.4.5 | 0.000107 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.41 | 0.000294 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.45 | 0.000122 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.46 | 0.000104 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.55 | 0.000917 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.59 | 0.00053 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.74 | 0.000116 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.75 | 0.000056 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.92 | 0.000287 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | AY.99.1 | 0.001553 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.1.370 | 0.012658 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.221 | 0.000071 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.243 | 0.00007 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.36.8 | 0.001 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.422 | 0.000812 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.429 | 0.000024 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.499 | 0.00105 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.526 | 0.000024 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.589 | 0.007576 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.592 | 0.04 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | B.1.596 | 0.000087 |
ORF10 | 24 | R24H | cGt | cAt | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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