CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : Mut = P10S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1010P10SnonsynCcgTcg11950119440.99949829585-29587
ORF1010P10SnonsynCcGTcA1195030.00025104629585-29587
ORF1010P10SnonsynCcGTcC1195020.00016736429585-29587
ORF1010P10SnonsynCcGTcT1195010.00008368229585-29587

Details of the mutation P10S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1010P10SCcgTcg1194411950All0.002284
ORF1010P10SCcGTcA311950All0.000001
ORF1010P10SCcGTcC211950All0
ORF1010P10SCcGTcT111950All0
ORF1010P10SCcgTcg65796579B.1.1.70.00589
ORF1010P10SCcgTcg784784AU.10.992405
ORF1010P10SCcgTcg317319B.1.617.20.001194
ORF1010P10SCcGTcC2319B.1.617.20.000008
ORF1010P10SCcgTcg308308B.1.20.002712
ORF1010P10SCcgTcg302302AY.540.028795
ORF1010P10SCcgTcg264264AY.40.000411
ORF1010P10SCcgTcg244245AY.430.001081
ORF1010P10SCcGTcA1245AY.430.000004
ORF1010P10SCcgTcg213213B.1.177.860.039075
ORF1010P10SCcgTcg195195B.1.10.003537
ORF1010P10SCcgTcg137137N.50.242049
ORF1010P10SCcgTcg135135AY.1030.000838
ORF1010P10SCcgTcg130130B.1.1.630.050154
ORF1010P10SCcgTcg128128AY.30.001273
ORF1010P10SCcgTcg125125B.1.4290.002941
ORF1010P10SCcgTcg109109B.1.1770.001435
ORF1010P10SCcgTcg9191B.1.36.360.054786
ORF1010P10SCcgTcg8989B.10.000815
ORF1010P10SCcgTcg8787AY.260.002463
ORF1010P10SCcgTcg8686B.1.3240.138042
ORF1010P10SCcgTcg7070AY.250.000421
ORF1010P10SCcgTcg6666AY.4.20.001431
ORF1010P10SCcgTcg6363B.1.1.4320.079747
ORF1010P10SCcgTcg6161AY.440.000371
ORF1010P10SCcgTcg5757B.1.1.2740.287879
ORF1010P10SCcgTcg5656AY.50.001156
ORF1010P10SCcgTcg5454P.10.000851
ORF1010P10SCcgTcg4848AY.39.10.001901
ORF1010P10SCcgTcg4545AY.1020.001193
ORF1010P10SCcgTcg4142AY.200.001593
ORF1010P10SCcGTcA142AY.200.000039
ORF1010P10SCcgTcg4141A.10.011556
ORF1010P10SCcgTcg3838AY.1200.001413
ORF1010P10SCcgTcg3737B.1.4270.001868
ORF1010P10SCcgTcg3434AY.980.002686
ORF1010P10SCcgTcg2929B.340.39726
ORF1010P10SCcgTcg2828AY.390.000692
ORF1010P10SCcgTcg2727AY.60.00111
ORF1010P10SCcgTcg2626D.20.001951
ORF1010P10SCcgTcg2424B.1.2650.030496
ORF1010P10SCcgTcg2323AY.500.018385
ORF1010P10SCcgTcg2323AY.920.006607
ORF1010P10SCcgTcg2121B.1.1.5190.000834
ORF1010P10SCcgTcg2121B.1.2210.001492
ORF1010P10SCcgTcg2121B.1.36.290.010864
ORF1010P10SCcgTcg1919B.1.1.1330.161017
ORF1010P10SCcgTcg1818B.1.5960.001568
ORF1010P10SCcgTcg1717AY.420.000684
ORF1010P10SCcgTcg1515A.2.50.007485
ORF1010P10SCcgTcg1515AY.98.10.000726
ORF1010P10SCcgTcg1515B.1.3510.000446
ORF1010P10SCcgTcg1414AY.9.20.000514
ORF1010P10SCcgTcg1313AY.1190.000459
ORF1010P10SCcgTcg1212B.1.6210.001062
ORF1010P10SCcgTcg1111B.1.1.4200.011066
ORF1010P10SCcgTcg1111B.1.5260.000259
ORF1010P10SCcgTcg1010AY.230.000697
ORF1010P10SCcgTcg1010AY.750.00056
ORF1010P10SCcgTcg1010B.1.1600.000312
ORF1010P10SCcgTcg1010B.1.177.160.006645
ORF1010P10SCcgTcg1010B.1.2580.000665
ORF1010P10SCcgTcg99AY.1000.000414
ORF1010P10SCcgTcg99AY.1180.000564
ORF1010P10SCcgTcg99AY.140.000792
ORF1010P10SCcgTcg99B.1.1.2140.000499
ORF1010P10SCcgTcg99B.1.1.2220.001836
ORF1010P10SCcgTcg99B.1.5090.007792
ORF1010P10SCcgTcg99B.1.6370.000658
ORF1010P10SCcgTcg78AY.450.000852
ORF1010P10SCcGTcT18AY.450.000122
ORF1010P10SCcgTcg88B.1.177.240.010363
ORF1010P10SCcgTcg88B.1.466.20.00313
ORF1010P10SCcgTcg88Q.10.001011
ORF1010P10SCcgTcg77AY.290.00011
ORF1010P10SCcgTcg77AY.460.000729
ORF1010P10SCcgTcg77B.1.1.3050.027027
ORF1010P10SCcgTcg77B.1.1.3060.003069
ORF1010P10SCcgTcg66AY.1170.000507
ORF1010P10SCcgTcg66AY.590.003178
ORF1010P10SCcgTcg66B.1.177.70.000989
ORF1010P10SCcgTcg66B.1.2430.000418
ORF1010P10SCcgTcg66P.20.00112
ORF1010P10SCcgTcg66Q.40.002729
ORF1010P10SCcgTcg55AY.4.2.10.000745
ORF1010P10SCcgTcg55AY.470.000156
ORF1010P10SCcgTcg55B.1.1.2200.009294
ORF1010P10SCcgTcg55B.1.1.330.002104
ORF1010P10SCcgTcg55B.1.110.30.003592
ORF1010P10SCcgTcg55B.1.258.170.00052
ORF1010P10SCcgTcg55C.370.00058
ORF1010P10SCcgTcg55Q.80.000825
ORF1010P10SCcgTcg44AY.190.004561
ORF1010P10SCcgTcg44AY.270.000259
ORF1010P10SCcgTcg44AY.370.001264
ORF1010P10SCcgTcg44AY.610.000419
ORF1010P10SCcgTcg44AY.730.002661
ORF1010P10SCcgTcg44AY.850.001709
ORF1010P10SCcgTcg44B0.000511
ORF1010P10SCcgTcg44B.1.1.2840.00043
ORF1010P10SCcgTcg44B.1.1.3040.011236
ORF1010P10SCcgTcg44B.1.1.3170.001647
ORF1010P10SCcgTcg44B.1.1.3510.011173
ORF1010P10SCcgTcg44B.1.1.4480.00813
ORF1010P10SCcgTcg44B.1.177.440.002076
ORF1010P10SCcgTcg44B.1.2340.000528
ORF1010P10SCcgTcg44B.1.3460.005242
ORF1010P10SCcgTcg44B.1.4970.001259
ORF1010P10SCcgTcg33AY.1010.001471
ORF1010P10SCcgTcg33AY.46.60.000217
ORF1010P10SCcgTcg33AY.7.10.000338
ORF1010P10SCcgTcg33AY.9.10.000251
ORF1010P10SCcgTcg33AY.99.20.000276
ORF1010P10SCcgTcg33B.1.177.540.001819
ORF1010P10SCcgTcg33B.1.177.810.000568
ORF1010P10SCcgTcg33B.1.2600.010033
ORF1010P10SCcgTcg33B.1.438.10.000322
ORF1010P10SCcgTcg33B.1.4590.012245
ORF1010P10SCcgTcg23B.1.617.10.000258
ORF1010P10SCcGTcA13B.1.617.10.000129
ORF1010P10SCcgTcg33B.1.6190.002613
ORF1010P10SCcgTcg33C.1.20.012766
ORF1010P10SCcgTcg33P.1.140.000143
ORF1010P10SCcgTcg22AE.80.000978
ORF1010P10SCcgTcg22AY.1050.001286
ORF1010P10SCcgTcg22AY.1070.000932
ORF1010P10SCcgTcg22AY.1100.000225
ORF1010P10SCcgTcg22AY.1130.000285
ORF1010P10SCcgTcg22AY.130.000322
ORF1010P10SCcgTcg22AY.160.000759
ORF1010P10SCcgTcg22AY.340.000194
ORF1010P10SCcgTcg22AY.360.000296
ORF1010P10SCcgTcg22AY.550.001835
ORF1010P10SCcgTcg22AY.710.00095
ORF1010P10SCcgTcg22AY.780.003082
ORF1010P10SCcgTcg22AY.90.000135
ORF1010P10SCcgTcg22B.1.1.1530.002191
ORF1010P10SCcgTcg22B.1.1.280.000622
ORF1010P10SCcgTcg22B.1.160.70.004158
ORF1010P10SCcgTcg22B.1.177.210.000153
ORF1010P10SCcgTcg22B.1.258.220.005333
ORF1010P10SCcgTcg22B.1.351.20.000605
ORF1010P10SCcgTcg22B.1.3690.00057
ORF1010P10SCcgTcg22B.1.4530.006472
ORF1010P10SCcgTcg22B.1.5270.007407
ORF1010P10SCcgTcg22B.1.564.10.003155
ORF1010P10SCcgTcg22B.1.5750.000607
ORF1010P10SCcgTcg22B.1.5820.000981
ORF1010P10SCcgTcg22B.1.619.10.001283
ORF1010P10SCcgTcg22B.1.6280.000705
ORF1010P10SCcgTcg22B.400.000729
ORF1010P10SCcgTcg22P.30.00319
ORF1010P10SCcgTcg11A0.000387
ORF1010P10SCcgTcg11A.110.058824
ORF1010P10SCcgTcg11A.280.002646
ORF1010P10SCcgTcg11AD.20.000219
ORF1010P10SCcgTcg11AY.10.000396
ORF1010P10SCcgTcg11AY.1060.000335
ORF1010P10SCcgTcg11AY.1140.000231
ORF1010P10SCcgTcg11AY.116.10.000311
ORF1010P10SCcgTcg11AY.1210.000135
ORF1010P10SCcgTcg11AY.16.10.00047
ORF1010P10SCcgTcg11AY.220.002092
ORF1010P10SCcgTcg11AY.29.10.000221
ORF1010P10SCcgTcg11AY.300.000396
ORF1010P10SCcgTcg11AY.320.000532
ORF1010P10SCcgTcg11AY.34.10.00051
ORF1010P10SCcgTcg11AY.350.000233
ORF1010P10SCcgTcg11AY.39.20.001541
ORF1010P10SCcgTcg11AY.46.40.000165
ORF1010P10SCcgTcg11AY.46.50.000198
ORF1010P10SCcgTcg11AY.530.000288
ORF1010P10SCcgTcg11AY.570.000656
ORF1010P10SCcgTcg11AY.580.000907
ORF1010P10SCcgTcg11AY.620.000436
ORF1010P10SCcgTcg11AY.690.000187
ORF1010P10SCcgTcg11AY.700.000209
ORF1010P10SCcgTcg11AY.75.10.00018
ORF1010P10SCcgTcg11AY.760.004831
ORF1010P10SCcgTcg11AY.840.000437
ORF1010P10SCcgTcg11AY.910.00073
ORF1010P10SCcgTcg11AY.930.000273
ORF1010P10SCcgTcg11AY.950.000761
ORF1010P10SCcgTcg11AY.960.002075
ORF1010P10SCcgTcg11AY.990.001049
ORF1010P10SCcgTcg11B.1.1.10.000327
ORF1010P10SCcgTcg11B.1.1.1170.009709
ORF1010P10SCcgTcg11B.1.1.1280.007092
ORF1010P10SCcgTcg11B.1.1.1410.002012
ORF1010P10SCcgTcg11B.1.1.1590.004673
ORF1010P10SCcgTcg11B.1.1.1890.001513
ORF1010P10SCcgTcg11B.1.1.1980.001468
ORF1010P10SCcgTcg11B.1.1.2160.00089
ORF1010P10SCcgTcg11B.1.1.2250.007194
ORF1010P10SCcgTcg11B.1.1.2280.003049
ORF1010P10SCcgTcg11B.1.1.2430.004082
ORF1010P10SCcgTcg11B.1.1.250.000569
ORF1010P10SCcgTcg11B.1.1.3180.000302
ORF1010P10SCcgTcg11B.1.1.3480.000796
ORF1010P10SCcgTcg11B.1.1.3540.004386
ORF1010P10SCcgTcg11B.1.1.3770.001381
ORF1010P10SCcgTcg11B.1.1.3970.002252
ORF1010P10SCcgTcg11B.1.1.4090.002833
ORF1010P10SCcgTcg11B.1.1.4310.016129
ORF1010P10SCcgTcg11B.1.1.460.004367
ORF1010P10SCcgTcg11B.1.1.700.000341
ORF1010P10SCcgTcg11B.1.1040.00369
ORF1010P10SCcgTcg11B.1.1270.002198
ORF1010P10SCcgTcg11B.1.1280.000635
ORF1010P10SCcgTcg11B.1.1390.000733
ORF1010P10SCcgTcg11B.1.160.260.002421
ORF1010P10SCcgTcg11B.1.177.150.000631
ORF1010P10SCcgTcg11B.1.177.330.001645
ORF1010P10SCcgTcg11B.1.177.40.000211
ORF1010P10SCcgTcg11B.1.177.520.001757
ORF1010P10SCcgTcg11B.1.177.570.000281
ORF1010P10SCcgTcg11B.1.177.770.000726
ORF1010P10SCcgTcg11B.1.177.870.000728
ORF1010P10SCcgTcg11B.1.2060.000816
ORF1010P10SCcgTcg11B.1.2220.001692
ORF1010P10SCcgTcg11B.1.2410.000812
ORF1010P10SCcgTcg11B.1.2790.000514
ORF1010P10SCcgTcg11B.1.2810.021739
ORF1010P10SCcgTcg11B.1.2840.013158
ORF1010P10SCcgTcg11B.1.3330.010526
ORF1010P10SCcgTcg11B.1.360.000146
ORF1010P10SCcgTcg11B.1.36.160.001425
ORF1010P10SCcgTcg11B.1.36.170.000494
ORF1010P10SCcgTcg11B.1.36.180.00042
ORF1010P10SCcgTcg11B.1.36.390.002217
ORF1010P10SCcgTcg11B.1.3770.004566
ORF1010P10SCcgTcg11B.1.4000.000429
ORF1010P10SCcgTcg11B.1.4620.007246
ORF1010P10SCcgTcg11B.1.4700.001404
ORF1010P10SCcgTcg11B.1.5030.002488
ORF1010P10SCcgTcg11B.1.5240.001406
ORF1010P10SCcgTcg11B.1.5250.000113
ORF1010P10SCcgTcg11B.1.5610.000397
ORF1010P10SCcgTcg11B.1.5970.00463
ORF1010P10SCcgTcg11B.1.6090.000479
ORF1010P10SCcgTcg11B.1.6260.005714
ORF1010P10SCcgTcg11B.1.6270.00202
ORF1010P10SCcgTcg11B.580.010204
ORF1010P10SCcgTcg11C.350.000774
ORF1010P10SCcgTcg11L.30.003546
ORF1010P10SCcgTcg11P.1.120.000484
ORF1010P10SCcgTcg11P.1.70.000319
ORF1010P10SCcgTcg11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.