CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : Mut = N25N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1025N25NsynaaCaaT36483648129630-29632

Details of the mutation N25N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1025N25NaaCaaT36483648All0.000698
ORF1025N25NaaCaaT893893C.36.30.506523
ORF1025N25NaaCaaT845845B.1.1.70.000756
ORF1025N25NaaCaaT480480AY.40.000747
ORF1025N25NaaCaaT322322C.36.3.10.875
ORF1025N25NaaCaaT104104B.1.20.000916
ORF1025N25NaaCaaT7272AY.430.000319
ORF1025N25NaaCaaT7272B.1.617.20.000271
ORF1025N25NaaCaaT6868AY.1190.002401
ORF1025N25NaaCaaT6464AY.270.004142
ORF1025N25NaaCaaT5151B.10.000467
ORF1025N25NaaCaaT4949A.270.081126
ORF1025N25NaaCaaT4747B.1.4290.001106
ORF1025N25NaaCaaT4444AY.250.000265
ORF1025N25NaaCaaT2929AY.1030.00018
ORF1025N25NaaCaaT2929C.360.026412
ORF1025N25NaaCaaT2525AY.30.000249
ORF1025N25NaaCaaT2525P.1.140.001195
ORF1025N25NaaCaaT2424B.1.1.2220.004896
ORF1025N25NaaCaaT1818B.1.1600.000561
ORF1025N25NaaCaaT1515B.1.10.000272
ORF1025N25NaaCaaT1313AY.440.000079
ORF1025N25NaaCaaT1212P.10.000189
ORF1025N25NaaCaaT1111AY.390.000272
ORF1025N25NaaCaaT1111B.1.1770.000145
ORF1025N25NaaCaaT1010AY.260.000283
ORF1025N25NaaCaaT1010AY.610.001048
ORF1025N25NaaCaaT99AY.290.000142
ORF1025N25NaaCaaT99B.1.3510.000268
ORF1025N25NaaCaaT99Q.80.001484
ORF1025N25NaaCaaT88B.1.2400.001725
ORF1025N25NaaCaaT88B.1.3110.002197
ORF1025N25NaaCaaT88B.1.5260.000188
ORF1025N25NaaCaaT88P.1.170.001294
ORF1025N25NaaCaaT88R.10.00072
ORF1025N25NaaCaaT77B.1.2580.000466
ORF1025N25NaaCaaT77B.1.5960.00061
ORF1025N25NaaCaaT77C.370.000812
ORF1025N25NaaCaaT66AY.1020.000159
ORF1025N25NaaCaaT66AY.1170.000507
ORF1025N25NaaCaaT66B.1.6200.005676
ORF1025N25NaaCaaT66P.1.130.005391
ORF1025N25NaaCaaT55AY.10.001979
ORF1025N25NaaCaaT55AY.120.20.006427
ORF1025N25NaaCaaT55AY.4.20.000108
ORF1025N25NaaCaaT55AY.50.000103
ORF1025N25NaaCaaT55AY.99.20.000461
ORF1025N25NaaCaaT55B.1.1.390.002548
ORF1025N25NaaCaaT44AY.1000.000184
ORF1025N25NaaCaaT44AY.1200.000149
ORF1025N25NaaCaaT44AY.200.000155
ORF1025N25NaaCaaT44B.1.1.10.001307
ORF1025N25NaaCaaT44B.1.1.2940.005063
ORF1025N25NaaCaaT44B.1.177.170.003284
ORF1025N25NaaCaaT44B.1.4990.004202
ORF1025N25NaaCaaT44C.140.017316
ORF1025N25NaaCaaT44D.20.0003
ORF1025N25NaaCaaT33AY.1070.001398
ORF1025N25NaaCaaT33AY.1180.000188
ORF1025N25NaaCaaT33AY.470.000093
ORF1025N25NaaCaaT33AY.510.002727
ORF1025N25NaaCaaT33AY.90.000203
ORF1025N25NaaCaaT33AY.98.10.000145
ORF1025N25NaaCaaT33B.1.1.1760.001318
ORF1025N25NaaCaaT33B.1.1.280.000934
ORF1025N25NaaCaaT33B.1.1.2840.000322
ORF1025N25NaaCaaT22AY.130.000322
ORF1025N25NaaCaaT22AY.230.000139
ORF1025N25NaaCaaT22AY.330.000134
ORF1025N25NaaCaaT22AY.4.50.000215
ORF1025N25NaaCaaT22AY.400.001929
ORF1025N25NaaCaaT22AY.46.40.000329
ORF1025N25NaaCaaT22AY.60.000082
ORF1025N25NaaCaaT22AY.770.002255
ORF1025N25NaaCaaT22B0.000256
ORF1025N25NaaCaaT22B.1.1.250.001137
ORF1025N25NaaCaaT22B.1.1.3980.006452
ORF1025N25NaaCaaT22B.1.1.500.001358
ORF1025N25NaaCaaT22B.1.1470.001512
ORF1025N25NaaCaaT22B.1.6280.000705
ORF1025N25NaaCaaT22B.1.6370.000146
ORF1025N25NaaCaaT22C.160.002121
ORF1025N25NaaCaaT22W.40.002703
ORF1025N25NaaCaaT11A.2.40.003367
ORF1025N25NaaCaaT11AD.20.000219
ORF1025N25NaaCaaT11AE.80.000489
ORF1025N25NaaCaaT11AY.1080.001103
ORF1025N25NaaCaaT11AY.1130.000142
ORF1025N25NaaCaaT11AY.1210.000135
ORF1025N25NaaCaaT11AY.320.000532
ORF1025N25NaaCaaT11AY.34.10.00051
ORF1025N25NaaCaaT11AY.380.000499
ORF1025N25NaaCaaT11AY.39.10.00004
ORF1025N25NaaCaaT11AY.420.00004
ORF1025N25NaaCaaT11AY.450.000122
ORF1025N25NaaCaaT11AY.540.000095
ORF1025N25NaaCaaT11AY.570.000656
ORF1025N25NaaCaaT11AY.600.000938
ORF1025N25NaaCaaT11AY.700.000209
ORF1025N25NaaCaaT11AY.710.000475
ORF1025N25NaaCaaT11AY.75.10.00018
ORF1025N25NaaCaaT11AY.960.002075
ORF1025N25NaaCaaT11AY.980.000079
ORF1025N25NaaCaaT11AY.990.001049
ORF1025N25NaaCaaT11B.1.1.1390.022727
ORF1025N25NaaCaaT11B.1.1.3060.000438
ORF1025N25NaaCaaT11B.1.1.3170.000412
ORF1025N25NaaCaaT11B.1.1.3720.000689
ORF1025N25NaaCaaT11B.1.1.4850.016667
ORF1025N25NaaCaaT11B.1.1.5190.00004
ORF1025N25NaaCaaT11B.1.1030.019231
ORF1025N25NaaCaaT11B.1.1280.000635
ORF1025N25NaaCaaT11B.1.160.280.002924
ORF1025N25NaaCaaT11B.1.177.60.000977
ORF1025N25NaaCaaT11B.1.177.650.000665
ORF1025N25NaaCaaT11B.1.177.70.000165
ORF1025N25NaaCaaT11B.1.177.810.000189
ORF1025N25NaaCaaT11B.1.2390.001221
ORF1025N25NaaCaaT11B.1.2430.00007
ORF1025N25NaaCaaT11B.1.258.20.004505
ORF1025N25NaaCaaT11B.1.258.70.001912
ORF1025N25NaaCaaT11B.1.3020.013333
ORF1025N25NaaCaaT11B.1.351.30.000876
ORF1025N25NaaCaaT11B.1.360.000146
ORF1025N25NaaCaaT11B.1.36.310.001751
ORF1025N25NaaCaaT11B.1.3690.000285
ORF1025N25NaaCaaT11B.1.3750.00082
ORF1025N25NaaCaaT11B.1.3890.001002
ORF1025N25NaaCaaT11B.1.4000.000429
ORF1025N25NaaCaaT11B.1.4090.000781
ORF1025N25NaaCaaT11B.1.4270.00005
ORF1025N25NaaCaaT11B.1.4660.023256
ORF1025N25NaaCaaT11B.1.466.20.000391
ORF1025N25NaaCaaT11B.1.4700.001404
ORF1025N25NaaCaaT11B.1.4970.000315
ORF1025N25NaaCaaT11B.1.5380.008065
ORF1025N25NaaCaaT11B.1.5760.000907
ORF1025N25NaaCaaT11B.1.5800.004065
ORF1025N25NaaCaaT11B.1.5820.000491
ORF1025N25NaaCaaT11B.1.6120.002653
ORF1025N25NaaCaaT11B.1.617.10.000129
ORF1025N25NaaCaaT11B.1.6250.002353
ORF1025N25NaaCaaT11B.1.6340.003425
ORF1025N25NaaCaaT11B.1.940.027027
ORF1025N25NaaCaaT11C.390.018868
ORF1025N25NaaCaaT11C.90.030303
ORF1025N25NaaCaaT11P.1.100.000269
ORF1025N25NaaCaaT11P.1.120.000484
ORF1025N25NaaCaaT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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