CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : Mut = I4V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF104I4VnonsynAtaGta510751010.99882529567-29569
ORF104I4VnonsynAtAGtG510760.0011748629567-29569

Details of the mutation I4V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF104I4VAtaGta51015107All0.000976
ORF104I4VAtAGtG65107All0.000001
ORF104I4VAtaGta13491349B.1.3960.952011
ORF104I4VAtaGta604604B.1.617.20.002274
ORF104I4VAtaGta431431AY.1020.011428
ORF104I4VAtaGta356356B.1.1.70.000319
ORF104I4VAtaGta345345B.10.00316
ORF104I4VAtaGta210210AY.680.057487
ORF104I4VAtaGta140140AY.240.060345
ORF104I4VAtaGta138138AY.700.028774
ORF104I4VAtaGta134134B.1.20.00118
ORF104I4VAtaGta111117B.1.10.002014
ORF104I4VAtAGtG6117B.1.10.000109
ORF104I4VAtaGta9797AY.440.00059
ORF104I4VAtaGta9191AY.250.000547
ORF104I4VAtaGta7676AY.230.005301
ORF104I4VAtaGta5353AY.5.30.017881
ORF104I4VAtaGta4646AY.40.000072
ORF104I4VAtaGta4646B.1.5820.022571
ORF104I4VAtaGta4444AY.430.000195
ORF104I4VAtaGta4141B.1.5960.003573
ORF104I4VAtaGta3737B.1.5750.011226
ORF104I4VAtaGta3131B.1.2340.00409
ORF104I4VAtaGta3131B.1.258.170.003223
ORF104I4VAtaGta2828P.10.000441
ORF104I4VAtaGta2727AY.390.000667
ORF104I4VAtaGta2424AY.1170.002028
ORF104I4VAtaGta2020AY.1030.000124
ORF104I4VAtaGta1818AY.30.000179
ORF104I4VAtaGta1818AY.50.000372
ORF104I4VAtaGta1818AY.9.20.000661
ORF104I4VAtaGta1616B.1.4290.000376
ORF104I4VAtaGta1515AY.460.001561
ORF104I4VAtaGta1414AY.200.000544
ORF104I4VAtaGta1414B.1.1770.000184
ORF104I4VAtaGta1313B.1.1.2160.011576
ORF104I4VAtaGta1212AY.1000.000552
ORF104I4VAtaGta1212B.1.780.102564
ORF104I4VAtaGta1111AY.520.008958
ORF104I4VAtaGta1010AY.980.00079
ORF104I4VAtaGta1010B.1.2400.002156
ORF104I4VAtaGta99AY.330.000601
ORF104I4VAtaGta99AY.470.00028
ORF104I4VAtaGta99AY.5.40.00249
ORF104I4VAtaGta99B.1.1.2690.012179
ORF104I4VAtaGta99B.1.1.390.004587
ORF104I4VAtaGta99B.1.5950.002349
ORF104I4VAtaGta99B.1.6000.052632
ORF104I4VAtaGta77AY.1180.000439
ORF104I4VAtaGta77AY.1190.000247
ORF104I4VAtaGta77AY.270.000453
ORF104I4VAtaGta77AY.340.000679
ORF104I4VAtaGta77AY.34.10.00357
ORF104I4VAtaGta77B.1.2100.014925
ORF104I4VAtaGta77B.1.2430.000487
ORF104I4VAtaGta77B.1.5260.000165
ORF104I4VAtaGta77P.1.100.001886
ORF104I4VAtaGta66AY.910.004383
ORF104I4VAtaGta66AZ.20.004926
ORF104I4VAtaGta66B.1.1.370.001157
ORF104I4VAtaGta66B.1.1.5190.000238
ORF104I4VAtaGta66B.1.438.10.000644
ORF104I4VAtaGta55AY.130.000805
ORF104I4VAtaGta55AY.260.000142
ORF104I4VAtaGta55AY.770.005637
ORF104I4VAtaGta55B.1.1.1940.024752
ORF104I4VAtaGta55B.1.1.500.003394
ORF104I4VAtaGta55B.1.3510.000149
ORF104I4VAtaGta55P.1.150.001162
ORF104I4VAtaGta44AY.1200.000149
ORF104I4VAtaGta44AY.290.000063
ORF104I4VAtaGta44AY.450.000487
ORF104I4VAtaGta44AY.7.10.000451
ORF104I4VAtaGta44AY.90.00027
ORF104I4VAtaGta44B.1.1.3060.001754
ORF104I4VAtaGta44B.1.1.410.025316
ORF104I4VAtaGta44B.1.160.80.005155
ORF104I4VAtaGta44B.1.2580.000266
ORF104I4VAtaGta44B.1.5200.086957
ORF104I4VAtaGta44B.1.6110.16
ORF104I4VAtaGta44B.1.617.10.000516
ORF104I4VAtaGta33AY.10.001187
ORF104I4VAtaGta33AY.3.10.000256
ORF104I4VAtaGta33AY.4.20.000065
ORF104I4VAtaGta33AY.46.20.001906
ORF104I4VAtaGta33AY.750.000168
ORF104I4VAtaGta33B.1.1.3180.000905
ORF104I4VAtaGta33B.1.1.4170.008108
ORF104I4VAtaGta33B.1.1600.000094
ORF104I4VAtaGta33B.1.2350.007557
ORF104I4VAtaGta33B.1.3110.000824
ORF104I4VAtaGta33B.1.36.290.001552
ORF104I4VAtaGta33B.1.36.360.001806
ORF104I4VAtaGta33B.1.5090.002597
ORF104I4VAtaGta33B.1.5640.001278
ORF104I4VAtaGta33B.1.6120.007958
ORF104I4VAtaGta22AY.1140.000462
ORF104I4VAtaGta22AY.140.000176
ORF104I4VAtaGta22AY.400.001929
ORF104I4VAtaGta22AY.790.002421
ORF104I4VAtaGta22AY.9.10.000167
ORF104I4VAtaGta22AY.98.10.000097
ORF104I4VAtaGta22B.1.1.2840.000215
ORF104I4VAtaGta22B.1.1.3170.000823
ORF104I4VAtaGta22B.1.1.4130.013793
ORF104I4VAtaGta22B.1.1.4160.00181
ORF104I4VAtaGta22B.1.1110.00235
ORF104I4VAtaGta22B.1.1260.002551
ORF104I4VAtaGta22B.1.1470.001512
ORF104I4VAtaGta22B.1.2060.001631
ORF104I4VAtaGta22B.1.258.140.001961
ORF104I4VAtaGta22B.1.3690.00057
ORF104I4VAtaGta22B.1.3750.001639
ORF104I4VAtaGta22B.1.4430.009346
ORF104I4VAtaGta22B.1.5800.00813
ORF104I4VAtaGta22B.1.5890.015152
ORF104I4VAtaGta22D.20.00015
ORF104I4VAtaGta11A0.000387
ORF104I4VAtaGta11AY.1060.000335
ORF104I4VAtaGta11AY.1080.001103
ORF104I4VAtaGta11AY.1100.000113
ORF104I4VAtaGta11AY.1160.000287
ORF104I4VAtaGta11AY.150.002222
ORF104I4VAtaGta11AY.170.008197
ORF104I4VAtaGta11AY.190.00114
ORF104I4VAtaGta11AY.23.10.000417
ORF104I4VAtaGta11AY.360.000148
ORF104I4VAtaGta11AY.4.2.10.000149
ORF104I4VAtaGta11AY.420.00004
ORF104I4VAtaGta11AY.46.40.000165
ORF104I4VAtaGta11AY.540.000095
ORF104I4VAtaGta11AY.60.000041
ORF104I4VAtaGta11AY.690.000187
ORF104I4VAtaGta11AY.710.000475
ORF104I4VAtaGta11AY.840.000437
ORF104I4VAtaGta11AY.960.002075
ORF104I4VAtaGta11B0.000128
ORF104I4VAtaGta11B.1.1.1180.010204
ORF104I4VAtaGta11B.1.1.1370.0125
ORF104I4VAtaGta11B.1.1.1420.017544
ORF104I4VAtaGta11B.1.1.1450.037037
ORF104I4VAtaGta11B.1.1.1630.007634
ORF104I4VAtaGta11B.1.1.2010.02439
ORF104I4VAtaGta11B.1.1.2140.000055
ORF104I4VAtaGta11B.1.1.2220.000204
ORF104I4VAtaGta11B.1.1.250.000569
ORF104I4VAtaGta11B.1.1.270.00565
ORF104I4VAtaGta11B.1.1.280.000311
ORF104I4VAtaGta11B.1.1.2880.001916
ORF104I4VAtaGta11B.1.1.3040.002809
ORF104I4VAtaGta11B.1.1.3350.012987
ORF104I4VAtaGta11B.1.1.3480.000796
ORF104I4VAtaGta11B.1.1.3510.002793
ORF104I4VAtaGta11B.1.1.3630.005988
ORF104I4VAtaGta11B.1.1.3890.006061
ORF104I4VAtaGta11B.1.1.4090.002833
ORF104I4VAtaGta11B.1.1.4340.000349
ORF104I4VAtaGta11B.1.1.4620.008621
ORF104I4VAtaGta11B.1.1.4660.008696
ORF104I4VAtaGta11B.1.1.630.000386
ORF104I4VAtaGta11B.1.1030.019231
ORF104I4VAtaGta11B.1.1190.010526
ORF104I4VAtaGta11B.1.1310.008772
ORF104I4VAtaGta11B.1.1390.000733
ORF104I4VAtaGta11B.1.160.70.002079
ORF104I4VAtaGta11B.1.177.650.000665
ORF104I4VAtaGta11B.1.1790.003759
ORF104I4VAtaGta11B.1.2210.000071
ORF104I4VAtaGta11B.1.2410.000812
ORF104I4VAtaGta11B.1.243.10.022222
ORF104I4VAtaGta11B.1.2840.013158
ORF104I4VAtaGta11B.1.3060.005714
ORF104I4VAtaGta11B.1.3240.001605
ORF104I4VAtaGta11B.1.3290.000608
ORF104I4VAtaGta11B.1.3490.000715
ORF104I4VAtaGta11B.1.3550.011111
ORF104I4VAtaGta11B.1.3800.006623
ORF104I4VAtaGta11B.1.3900.010638
ORF104I4VAtaGta11B.1.4480.002625
ORF104I4VAtaGta11B.1.4530.003236
ORF104I4VAtaGta11B.1.466.20.000391
ORF104I4VAtaGta11B.1.4730.019231
ORF104I4VAtaGta11B.1.4800.002488
ORF104I4VAtaGta11B.1.4850.014925
ORF104I4VAtaGta11B.1.5030.002488
ORF104I4VAtaGta11B.1.5170.000427
ORF104I4VAtaGta11B.1.5460.003704
ORF104I4VAtaGta11B.1.5660.019231
ORF104I4VAtaGta11B.1.6090.000479
ORF104I4VAtaGta11B.1.6210.000089
ORF104I4VAtaGta11B.1.6230.000536
ORF104I4VAtaGta11B.230.002924
ORF104I4VAtaGta11C.10.002392
ORF104I4VAtaGta11C.350.000774
ORF104I4VAtaGta11P.1.140.000048
ORF104I4VAtaGta11P.1.170.000162
ORF104I4VAtaGta11P.20.000187
ORF104I4VAtaGta11P.50.013699
ORF104I4VAtaGta11P.70.004367
ORF104I4VAtaGta11Q.10.000126
ORF104I4VAtaGta11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.