CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF10 | 8 | A8V | nonsyn | gCt | gTt | 7249 | 7248 | 0.999862 | 29579-29581 | |
ORF10 | 8 | A8V | nonsyn | gCT | gTC | 7249 | 1 | 0.00013795 | 29579-29581 | |
ORF10 | 8 | A8S | nonsyn | Gct | Tct | 2170 | 2168 | 0.999078 | 29579-29581 | |
ORF10 | 8 | A8S | nonsyn | GcT | TcA | 2170 | 1 | 0.000460829 | 29579-29581 | |
ORF10 | 8 | A8S | nonsyn | GcT | TcC | 2170 | 1 | 0.000460829 | 29579-29581 | |
ORF10 | 8 | A8del | del | GCT | --- | 576 | 576 | 1 | 29579-29581 | |
ORF10 | 8 | A8del2 | del | GCt | --t | 560 | 552 | 0.985714 | 29579-29581 | |
ORF10 | 8 | A8del2 | del | GCT | --N | 560 | 7 | 0.0125 | 29579-29581 | |
ORF10 | 8 | A8del2 | del | gCT | g-- | 560 | 1 | 0.00178571 | 29579-29581 | |
ORF10 | 8 | A8del1 | del | gcT | gc- | 494 | 484 | 0.979757 | 29579-29581 | |
ORF10 | 8 | A8del1 | del | Gct | -ct | 494 | 8 | 0.0161943 | 29579-29581 | |
ORF10 | 8 | A8del1 | del | GcT | -cC | 494 | 1 | 0.00202429 | 29579-29581 | |
ORF10 | 8 | A8del1 | del | GCt | -Gt | 494 | 1 | 0.00202429 | 29579-29581 | |
ORF10 | 8 | A8A | syn | gcT | gcC | 401 | 311 | 0.775561 | 29579-29581 | |
ORF10 | 8 | A8A | syn | gcT | gcA | 401 | 51 | 0.127182 | 29579-29581 | |
ORF10 | 8 | A8A | syn | gcT | gcG | 401 | 39 | 0.0972569 | 29579-29581 | |
ORF10 | 8 | A8T | nonsyn | Gct | Act | 369 | 369 | 1 | 29579-29581 | |
ORF10 | 8 | A8D | nonsyn | gCt | gAt | 174 | 174 | 1 | 29579-29581 | |
ORF10 | 8 | A8G | nonsyn | gCt | gGt | 21 | 21 | 1 | 29579-29581 | |
ORF10 | 8 | A8P | nonsyn | Gct | Cct | 17 | 16 | 0.941176 | 29579-29581 | |
ORF10 | 8 | A8P | nonsyn | GcT | CcG | 17 | 1 | 0.0588235 | 29579-29581 | |
ORF10 | 8 | A8F | nonsyn | GCt | TTt | 11 | 11 | 1 | 29579-29581 | |
ORF10 | 8 | A8R | nonsyn | GCt | CGt | 5 | 4 | 0.8 | 29579-29581 | |
ORF10 | 8 | A8R | nonsyn | GCT | CGC | 5 | 1 | 0.2 | 29579-29581 | |
ORF10 | 8 | A8L | nonsyn | GCT | CTC | 3 | 2 | 0.666667 | 29579-29581 | |
ORF10 | 8 | A8I | nonsyn | GCt | ATt | 3 | 2 | 0.666667 | 29579-29581 | |
ORF10 | 8 | A8I | nonsyn | GCT | ATA | 3 | 1 | 0.333333 | 29579-29581 | |
ORF10 | 8 | A8L | nonsyn | GCt | CTt | 3 | 1 | 0.333333 | 29579-29581 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF10 | 8 | A8V | gCt | gTt | 7248 | 7249 | All | 0.001386 |
ORF10 | 8 | A8V | gCT | gTC | 1 | 7249 | All | 0 |
ORF10 | 8 | A8V | gCt | gTt | 3543 | 3543 | AY.4 | 0.005514 |
ORF10 | 8 | A8S | Gct | Tct | 2168 | 2170 | All | 0.000415 |
ORF10 | 8 | A8S | GcT | TcC | 1 | 2170 | All | 0 |
ORF10 | 8 | A8S | GcT | TcA | 1 | 2170 | All | 0 |
ORF10 | 8 | A8V | gCt | gTt | 986 | 986 | B.1.1.7 | 0.000883 |
ORF10 | 8 | A8del | GCT | --- | 576 | 576 | All | 0.00011 |
ORF10 | 8 | A8del2 | GCt | --t | 552 | 560 | All | 0.000106 |
ORF10 | 8 | A8del2 | GCT | --N | 7 | 560 | All | 0.000001 |
ORF10 | 8 | A8del2 | gCT | g-- | 1 | 560 | All | 0 |
ORF10 | 8 | A8S | Gct | Tct | 532 | 532 | AY.44 | 0.003238 |
ORF10 | 8 | A8del1 | gcT | gc- | 484 | 494 | All | 0.000093 |
ORF10 | 8 | A8del1 | Gct | -ct | 8 | 494 | All | 0.000002 |
ORF10 | 8 | A8del1 | GcT | -cC | 1 | 494 | All | 0 |
ORF10 | 8 | A8del1 | GCt | -Gt | 1 | 494 | All | 0 |
ORF10 | 8 | A8del2 | GCt | --t | 420 | 420 | B.1.627 | 0.848485 |
ORF10 | 8 | A8V | gCt | gTt | 408 | 408 | B.1.2 | 0.003593 |
ORF10 | 8 | A8A | gcT | gcC | 311 | 401 | All | 0.000059 |
ORF10 | 8 | A8A | gcT | gcA | 51 | 401 | All | 0.00001 |
ORF10 | 8 | A8A | gcT | gcG | 39 | 401 | All | 0.000007 |
ORF10 | 8 | A8S | Gct | Tct | 387 | 387 | AY.3 | 0.003849 |
ORF10 | 8 | A8T | Gct | Act | 369 | 369 | All | 0.000071 |
ORF10 | 8 | A8V | gCt | gTt | 259 | 259 | P.1.1 | 0.082274 |
ORF10 | 8 | A8D | gCt | gAt | 174 | 174 | All | 0.000033 |
ORF10 | 8 | A8S | Gct | Tct | 163 | 163 | AY.29 | 0.002571 |
ORF10 | 8 | A8del | GCT | --- | 155 | 155 | AY.4 | 0.000241 |
ORF10 | 8 | A8V | gCt | gTt | 147 | 147 | B.1.617.2 | 0.000554 |
ORF10 | 8 | A8S | Gct | Tct | 143 | 143 | AY.25 | 0.00086 |
ORF10 | 8 | A8S | Gct | Tct | 131 | 131 | B.1.1.7 | 0.000117 |
ORF10 | 8 | A8S | Gct | Tct | 128 | 128 | B.1.427 | 0.006464 |
ORF10 | 8 | A8V | gCt | gTt | 124 | 124 | AY.103 | 0.00077 |
ORF10 | 8 | A8S | Gct | Tct | 123 | 123 | AY.43 | 0.000545 |
ORF10 | 8 | A8D | gCt | gAt | 119 | 119 | B.1.1.7 | 0.000107 |
ORF10 | 8 | A8A | gcT | gcC | 74 | 119 | B.1.1.7 | 0.000066 |
ORF10 | 8 | A8A | gcT | gcA | 33 | 119 | B.1.1.7 | 0.00003 |
ORF10 | 8 | A8A | gcT | gcG | 12 | 119 | B.1.1.7 | 0.000011 |
ORF10 | 8 | A8V | gCt | gTt | 117 | 117 | B.1.258.17 | 0.012165 |
ORF10 | 8 | A8V | gCt | gTt | 92 | 92 | AY.92 | 0.026429 |
ORF10 | 8 | A8S | Gct | Tct | 89 | 89 | B.1.617.2 | 0.000335 |
ORF10 | 8 | A8V | gCt | gTt | 87 | 87 | AY.43 | 0.000385 |
ORF10 | 8 | A8V | gCt | gTt | 85 | 85 | B.1.429 | 0.002 |
ORF10 | 8 | A8V | gCt | gTt | 81 | 81 | AY.3 | 0.000806 |
ORF10 | 8 | A8del | GCT | --- | 79 | 79 | B.1.1.7 | 0.000071 |
ORF10 | 8 | A8V | gCt | gTt | 76 | 76 | B.1 | 0.000696 |
ORF10 | 8 | A8S | Gct | Tct | 68 | 68 | AY.33 | 0.004541 |
ORF10 | 8 | A8V | gCt | gTt | 68 | 68 | AY.44 | 0.000414 |
ORF10 | 8 | A8V | gCt | gTt | 67 | 67 | AY.102 | 0.001776 |
ORF10 | 8 | A8del2 | GCt | --t | 54 | 61 | AY.26 | 0.001529 |
ORF10 | 8 | A8del2 | GCT | --N | 7 | 61 | AY.26 | 0.000198 |
ORF10 | 8 | A8T | Gct | Act | 61 | 61 | B.1.617.2 | 0.00023 |
ORF10 | 8 | A8S | Gct | Tct | 54 | 54 | AY.4 | 0.000084 |
ORF10 | 8 | A8V | gCt | gTt | 51 | 51 | AY.84 | 0.02231 |
ORF10 | 8 | A8V | gCt | gTt | 49 | 49 | P.1 | 0.000772 |
ORF10 | 8 | A8del1 | gcT | gc- | 48 | 48 | B.1.1.7 | 0.000043 |
ORF10 | 8 | A8V | gCt | gTt | 45 | 45 | B.1.524 | 0.063291 |
ORF10 | 8 | A8del | GCT | --- | 45 | 45 | B.1.617.2 | 0.000169 |
ORF10 | 8 | A8del1 | gcT | gc- | 44 | 44 | B.1.617.2 | 0.000166 |
ORF10 | 8 | A8V | gCt | gTt | 43 | 43 | B.1.1 | 0.00078 |
ORF10 | 8 | A8del | GCT | --- | 41 | 41 | AY.47 | 0.001275 |
ORF10 | 8 | A8V | gCt | gTt | 41 | 41 | B.1.526 | 0.000964 |
ORF10 | 8 | A8V | gCt | gTt | 41 | 41 | B.1.616 | 1 |
ORF10 | 8 | A8T | Gct | Act | 37 | 37 | AY.33 | 0.002471 |
ORF10 | 8 | A8V | gCt | gTt | 35 | 35 | AY.25 | 0.000211 |
ORF10 | 8 | A8V | gCt | gTt | 34 | 34 | AY.9.2 | 0.001249 |
ORF10 | 8 | A8V | gCt | gTt | 33 | 33 | B.1.351 | 0.000981 |
ORF10 | 8 | A8del | GCT | --- | 33 | 33 | B.1.526 | 0.000776 |
ORF10 | 8 | A8S | Gct | Tct | 32 | 32 | AY.26 | 0.000906 |
ORF10 | 8 | A8del1 | gcT | gc- | 32 | 32 | B.1.1.41 | 0.202532 |
ORF10 | 8 | A8T | Gct | Act | 32 | 32 | D.2 | 0.002401 |
ORF10 | 8 | A8T | Gct | Act | 29 | 29 | AY.118 | 0.001817 |
ORF10 | 8 | A8A | gcT | gcC | 27 | 28 | B.1.2 | 0.000238 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 28 | B.1.2 | 0.000009 |
ORF10 | 8 | A8V | gCt | gTt | 27 | 27 | B.1.1.189 | 0.040847 |
ORF10 | 8 | A8del | GCT | --- | 26 | 26 | AY.25 | 0.000156 |
ORF10 | 8 | A8del1 | gcT | gc- | 26 | 26 | AY.4 | 0.00004 |
ORF10 | 8 | A8del1 | gcT | gc- | 24 | 25 | AY.44 | 0.000146 |
ORF10 | 8 | A8del1 | Gct | -ct | 1 | 25 | AY.44 | 0.000006 |
ORF10 | 8 | A8T | Gct | Act | 25 | 25 | B.1.1.7 | 0.000022 |
ORF10 | 8 | A8V | gCt | gTt | 24 | 24 | B.1.177 | 0.000316 |
ORF10 | 8 | A8T | Gct | Act | 23 | 23 | AY.119 | 0.000812 |
ORF10 | 8 | A8del1 | gcT | gc- | 22 | 22 | AL.1 | 0.285714 |
ORF10 | 8 | A8del1 | gcT | gc- | 21 | 22 | AY.3 | 0.000209 |
ORF10 | 8 | A8del1 | Gct | -ct | 1 | 22 | AY.3 | 0.00001 |
ORF10 | 8 | A8G | gCt | gGt | 21 | 21 | All | 0.000004 |
ORF10 | 8 | A8V | gCt | gTt | 21 | 21 | AY.3.1 | 0.00179 |
ORF10 | 8 | A8del1 | gcT | gc- | 21 | 21 | AY.35 | 0.004894 |
ORF10 | 8 | A8V | gCt | gTt | 21 | 21 | B.1.311 | 0.005766 |
ORF10 | 8 | A8del2 | GCt | --t | 21 | 21 | B.1.617.2 | 0.000079 |
ORF10 | 8 | A8V | gCt | gTt | 20 | 20 | AY.42 | 0.000805 |
ORF10 | 8 | A8del | GCT | --- | 20 | 20 | B.1.1.519 | 0.000794 |
ORF10 | 8 | A8del | GCT | --- | 20 | 20 | B.1.160.14 | 0.042373 |
ORF10 | 8 | A8A | gcT | gcC | 16 | 20 | B.1.617.2 | 0.00006 |
ORF10 | 8 | A8A | gcT | gcG | 3 | 20 | B.1.617.2 | 0.000011 |
ORF10 | 8 | A8A | gcT | gcA | 1 | 20 | B.1.617.2 | 0.000004 |
ORF10 | 8 | A8del1 | gcT | gc- | 19 | 19 | AY.39 | 0.00047 |
ORF10 | 8 | A8V | gCt | gTt | 19 | 19 | AY.39 | 0.00047 |
ORF10 | 8 | A8A | gcT | gcC | 19 | 19 | B.1.1 | 0.000345 |
ORF10 | 8 | A8del1 | gcT | gc- | 17 | 18 | B.1.2 | 0.00015 |
ORF10 | 8 | A8del1 | GcT | -cC | 1 | 18 | B.1.2 | 0.000009 |
ORF10 | 8 | A8S | Gct | Tct | 18 | 18 | R.1 | 0.00162 |
ORF10 | 8 | A8P | Gct | Cct | 16 | 17 | All | 0.000003 |
ORF10 | 8 | A8P | GcT | CcG | 1 | 17 | All | 0 |
ORF10 | 8 | A8A | gcT | gcC | 17 | 17 | AY.103 | 0.000106 |
ORF10 | 8 | A8S | Gct | Tct | 17 | 17 | AY.103 | 0.000106 |
ORF10 | 8 | A8V | gCt | gTt | 17 | 17 | AY.113 | 0.002421 |
ORF10 | 8 | A8T | Gct | Act | 16 | 16 | AY.3 | 0.000159 |
ORF10 | 8 | A8S | Gct | Tct | 16 | 16 | AY.5.4 | 0.004427 |
ORF10 | 8 | A8V | gCt | gTt | 16 | 16 | B.1.36 | 0.002334 |
ORF10 | 8 | A8S | Gct | Tct | 15 | 15 | AY.114 | 0.003467 |
ORF10 | 8 | A8T | Gct | Act | 15 | 15 | AY.43 | 0.000066 |
ORF10 | 8 | A8S | Gct | Tct | 15 | 15 | B.1 | 0.000137 |
ORF10 | 8 | A8del1 | gcT | gc- | 14 | 15 | B.1 | 0.000128 |
ORF10 | 8 | A8del1 | Gct | -ct | 1 | 15 | B.1 | 0.000009 |
ORF10 | 8 | A8T | Gct | Act | 14 | 14 | AY.4 | 0.000022 |
ORF10 | 8 | A8T | Gct | Act | 14 | 14 | AY.5 | 0.000289 |
ORF10 | 8 | A8V | gCt | gTt | 13 | 13 | AY.20 | 0.000505 |
ORF10 | 8 | A8V | gCt | gTt | 13 | 13 | AY.26 | 0.000368 |
ORF10 | 8 | A8V | gCt | gTt | 13 | 13 | AY.4.2 | 0.000282 |
ORF10 | 8 | A8T | Gct | Act | 13 | 13 | AY.44 | 0.000079 |
ORF10 | 8 | A8V | gCt | gTt | 13 | 13 | B.1.1.434 | 0.004531 |
ORF10 | 8 | A8V | gCt | gTt | 13 | 13 | B.1.160.28 | 0.038012 |
ORF10 | 8 | A8A | gcT | gcA | 10 | 13 | B.1.429 | 0.000235 |
ORF10 | 8 | A8A | gcT | gcC | 2 | 13 | B.1.429 | 0.000047 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 13 | B.1.429 | 0.000024 |
ORF10 | 8 | A8V | gCt | gTt | 12 | 12 | AY.120.1 | 0.003852 |
ORF10 | 8 | A8del2 | GCt | --t | 12 | 12 | AY.4 | 0.000019 |
ORF10 | 8 | A8del1 | gcT | gc- | 12 | 12 | AY.4.2 | 0.00026 |
ORF10 | 8 | A8S | Gct | Tct | 12 | 12 | B.1.1 | 0.000218 |
ORF10 | 8 | A8S | Gct | Tct | 12 | 12 | B.1.2 | 0.000106 |
ORF10 | 8 | A8V | gCt | gTt | 12 | 12 | B.1.258.7 | 0.022945 |
ORF10 | 8 | A8D | gCt | gAt | 12 | 12 | B.1.427 | 0.000606 |
ORF10 | 8 | A8A | gcT | gcC | 12 | 12 | P.1.14 | 0.000574 |
ORF10 | 8 | A8F | GCt | TTt | 11 | 11 | All | 0.000002 |
ORF10 | 8 | A8S | Gct | Tct | 11 | 11 | AY.119 | 0.000388 |
ORF10 | 8 | A8del1 | gcT | gc- | 11 | 11 | AY.25 | 0.000066 |
ORF10 | 8 | A8T | Gct | Act | 11 | 11 | AY.26 | 0.000311 |
ORF10 | 8 | A8A | gcT | gcC | 9 | 11 | AY.4 | 0.000014 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 11 | AY.4 | 0.000002 |
ORF10 | 8 | A8A | gcT | gcA | 1 | 11 | AY.4 | 0.000002 |
ORF10 | 8 | A8V | gCt | gTt | 11 | 11 | B.1.1.317 | 0.004529 |
ORF10 | 8 | A8T | Gct | Act | 11 | 11 | B.1.177 | 0.000145 |
ORF10 | 8 | A8del | GCT | --- | 11 | 11 | B.1.2 | 0.000097 |
ORF10 | 8 | A8del1 | gcT | gc- | 11 | 11 | B.1.596 | 0.000959 |
ORF10 | 8 | A8V | gCt | gTt | 10 | 10 | AY.120 | 0.000372 |
ORF10 | 8 | A8S | Gct | Tct | 10 | 10 | AY.16 | 0.003797 |
ORF10 | 8 | A8del | GCT | --- | 10 | 10 | AY.3 | 0.000099 |
ORF10 | 8 | A8V | gCt | gTt | 10 | 10 | AY.39.1 | 0.000396 |
ORF10 | 8 | A8S | Gct | Tct | 10 | 10 | AY.5 | 0.000206 |
ORF10 | 8 | A8V | gCt | gTt | 10 | 10 | B.1.1.519 | 0.000397 |
ORF10 | 8 | A8V | gCt | gTt | 10 | 10 | B.1.160 | 0.000312 |
ORF10 | 8 | A8A | gcT | gcC | 10 | 10 | B.1.221 | 0.00071 |
ORF10 | 8 | A8V | gCt | gTt | 10 | 10 | B.1.243 | 0.000696 |
ORF10 | 8 | A8V | gCt | gTt | 10 | 10 | B.1.596 | 0.000871 |
ORF10 | 8 | A8V | gCt | gTt | 10 | 10 | P.1.14 | 0.000478 |
ORF10 | 8 | A8del1 | gcT | gc- | 9 | 9 | AD.2 | 0.001971 |
ORF10 | 8 | A8D | gCt | gAt | 9 | 9 | AY.25 | 0.000054 |
ORF10 | 8 | A8A | gcT | gcC | 9 | 9 | AY.44 | 0.000055 |
ORF10 | 8 | A8V | gCt | gTt | 9 | 9 | AY.75 | 0.000504 |
ORF10 | 8 | A8del | GCT | --- | 9 | 9 | B.1 | 0.000082 |
ORF10 | 8 | A8A | gcT | gcG | 9 | 9 | B.1.525 | 0.001018 |
ORF10 | 8 | A8D | gCt | gAt | 9 | 9 | Q.8 | 0.001484 |
ORF10 | 8 | A8del | GCT | --- | 8 | 8 | AY.102 | 0.000212 |
ORF10 | 8 | A8del1 | gcT | gc- | 8 | 8 | AY.103 | 0.00005 |
ORF10 | 8 | A8G | gCt | gGt | 8 | 8 | AY.103 | 0.00005 |
ORF10 | 8 | A8T | Gct | Act | 8 | 8 | AY.111 | 0.001465 |
ORF10 | 8 | A8V | gCt | gTt | 8 | 8 | AY.119 | 0.000282 |
ORF10 | 8 | A8S | Gct | Tct | 8 | 8 | AY.20 | 0.000311 |
ORF10 | 8 | A8S | Gct | Tct | 8 | 8 | AY.4.2 | 0.000174 |
ORF10 | 8 | A8A | gcT | gcC | 4 | 8 | AY.43 | 0.000018 |
ORF10 | 8 | A8A | gcT | gcG | 3 | 8 | AY.43 | 0.000013 |
ORF10 | 8 | A8A | gcT | gcA | 1 | 8 | AY.43 | 0.000004 |
ORF10 | 8 | A8del | GCT | --- | 8 | 8 | AY.44 | 0.000049 |
ORF10 | 8 | A8V | gCt | gTt | 8 | 8 | AY.46.6 | 0.000578 |
ORF10 | 8 | A8S | Gct | Tct | 8 | 8 | AY.47 | 0.000249 |
ORF10 | 8 | A8V | gCt | gTt | 8 | 8 | B.1.1.398 | 0.025806 |
ORF10 | 8 | A8T | Gct | Act | 8 | 8 | B.1.2 | 0.00007 |
ORF10 | 8 | A8G | gCt | gGt | 8 | 8 | B.1.609 | 0.003835 |
ORF10 | 8 | A8V | gCt | gTt | 8 | 8 | B.1.621 | 0.000708 |
ORF10 | 8 | A8V | gCt | gTt | 8 | 8 | C.16 | 0.008484 |
ORF10 | 8 | A8del1 | gcT | gc- | 7 | 7 | AY.102 | 0.000186 |
ORF10 | 8 | A8del | GCT | --- | 7 | 7 | AY.103 | 0.000043 |
ORF10 | 8 | A8A | gcT | gcC | 7 | 7 | AY.118 | 0.000439 |
ORF10 | 8 | A8del1 | gcT | gc- | 7 | 7 | AY.24 | 0.003017 |
ORF10 | 8 | A8T | Gct | Act | 7 | 7 | AY.25 | 0.000042 |
ORF10 | 8 | A8del | GCT | --- | 7 | 7 | AY.37 | 0.002212 |
ORF10 | 8 | A8V | gCt | gTt | 7 | 7 | AY.68 | 0.001916 |
ORF10 | 8 | A8A | gcT | gcC | 7 | 7 | B.1 | 0.000064 |
ORF10 | 8 | A8del2 | GCt | --t | 7 | 7 | B.1 | 0.000064 |
ORF10 | 8 | A8V | gCt | gTt | 7 | 7 | B.1.1.63 | 0.002701 |
ORF10 | 8 | A8V | gCt | gTt | 7 | 7 | B.1.258 | 0.000466 |
ORF10 | 8 | A8V | gCt | gTt | 7 | 7 | B.1.36.1 | 0.007982 |
ORF10 | 8 | A8V | gCt | gTt | 7 | 7 | B.1.427 | 0.000353 |
ORF10 | 8 | A8S | Gct | Tct | 7 | 7 | B.1.568 | 0.007778 |
ORF10 | 8 | A8S | Gct | Tct | 6 | 6 | AY.117 | 0.000507 |
ORF10 | 8 | A8del | GCT | --- | 6 | 6 | AY.118 | 0.000376 |
ORF10 | 8 | A8V | gCt | gTt | 6 | 6 | AY.34 | 0.000582 |
ORF10 | 8 | A8V | gCt | gTt | 6 | 6 | AY.47 | 0.000187 |
ORF10 | 8 | A8V | gCt | gTt | 6 | 6 | AY.6 | 0.000247 |
ORF10 | 8 | A8A | gcT | gcC | 6 | 6 | AY.61 | 0.000629 |
ORF10 | 8 | A8V | gCt | gTt | 6 | 6 | AY.71 | 0.00285 |
ORF10 | 8 | A8T | Gct | Act | 6 | 6 | B.1 | 0.000055 |
ORF10 | 8 | A8V | gCt | gTt | 6 | 6 | B.1.1.318 | 0.001811 |
ORF10 | 8 | A8del1 | gcT | gc- | 6 | 6 | B.1.160.31 | 0.048387 |
ORF10 | 8 | A8V | gCt | gTt | 6 | 6 | B.1.206 | 0.004894 |
ORF10 | 8 | A8S | Gct | Tct | 6 | 6 | B.1.232 | 0.003224 |
ORF10 | 8 | A8S | Gct | Tct | 6 | 6 | B.1.561 | 0.002382 |
ORF10 | 8 | A8del1 | gcT | gc- | 6 | 6 | P.1 | 0.000095 |
ORF10 | 8 | A8R | GCt | CGt | 4 | 5 | All | 0.000001 |
ORF10 | 8 | A8R | GCT | CGC | 1 | 5 | All | 0 |
ORF10 | 8 | A8A | gcT | gcC | 5 | 5 | AY.102 | 0.000133 |
ORF10 | 8 | A8A | gcT | gcC | 5 | 5 | AY.120 | 0.000186 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | AY.121 | 0.000677 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | AY.23 | 0.000349 |
ORF10 | 8 | A8A | gcT | gcC | 5 | 5 | AY.25 | 0.00003 |
ORF10 | 8 | A8A | gcT | gcC | 5 | 5 | AY.3 | 0.00005 |
ORF10 | 8 | A8F | GCt | TTt | 5 | 5 | AY.3 | 0.00005 |
ORF10 | 8 | A8S | Gct | Tct | 5 | 5 | AY.42 | 0.000201 |
ORF10 | 8 | A8del1 | gcT | gc- | 5 | 5 | AY.43 | 0.000022 |
ORF10 | 8 | A8del1 | gcT | gc- | 5 | 5 | AY.59 | 0.002648 |
ORF10 | 8 | A8S | Gct | Tct | 5 | 5 | AY.75 | 0.00028 |
ORF10 | 8 | A8D | gCt | gAt | 5 | 5 | B.1.1.214 | 0.000277 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | B.1.1.214 | 0.000277 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | B.1.1.39 | 0.002548 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | B.1.1.70 | 0.001705 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | B.1.151 | 0.055556 |
ORF10 | 8 | A8del | GCT | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF10 | 8 | A8A | gcT | gcC | 3 | 5 | B.1.177 | 0.00004 |
ORF10 | 8 | A8A | gcT | gcG | 2 | 5 | B.1.177 | 0.000026 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | B.1.637 | 0.000365 |
ORF10 | 8 | A8V | gCt | gTt | 5 | 5 | B.40 | 0.001821 |
ORF10 | 8 | A8del1 | gcT | gc- | 5 | 5 | C.36.3 | 0.002836 |
ORF10 | 8 | A8T | Gct | Act | 4 | 4 | AY.102 | 0.000106 |
ORF10 | 8 | A8A | gcT | gcC | 4 | 4 | AY.119 | 0.000141 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | AY.13 | 0.000644 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | AY.17 | 0.032787 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | AY.30 | 0.001583 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | AY.38 | 0.001997 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | AY.5 | 0.000083 |
ORF10 | 8 | A8del | GCT | --- | 4 | 4 | AY.54 | 0.000381 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | AY.61 | 0.000419 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | AY.8 | 0.002424 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | AY.86 | 0.00332 |
ORF10 | 8 | A8del | GCT | --- | 4 | 4 | AY.9 | 0.00027 |
ORF10 | 8 | A8del | GCT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF10 | 8 | A8del1 | gcT | gc- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF10 | 8 | A8del2 | GCt | --t | 4 | 4 | B.1.1.7 | 0.000004 |
ORF10 | 8 | A8P | Gct | Cct | 4 | 4 | B.1.1.7 | 0.000004 |
ORF10 | 8 | A8del | GCT | --- | 4 | 4 | B.1.160 | 0.000125 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | B.1.350 | 0.01173 |
ORF10 | 8 | A8S | Gct | Tct | 4 | 4 | B.1.409 | 0.003125 |
ORF10 | 8 | A8del1 | Gct | -ct | 4 | 4 | B.1.627 | 0.008081 |
ORF10 | 8 | A8S | Gct | Tct | 4 | 4 | P.1 | 0.000063 |
ORF10 | 8 | A8V | gCt | gTt | 4 | 4 | P.1.15 | 0.000929 |
ORF10 | 8 | A8A | gcT | gcC | 3 | 3 | A | 0.001161 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | A.1 | 0.000846 |
ORF10 | 8 | A8L | GCT | CTC | 2 | 3 | All | 0 |
ORF10 | 8 | A8I | GCt | ATt | 2 | 3 | All | 0 |
ORF10 | 8 | A8L | GCt | CTt | 1 | 3 | All | 0 |
ORF10 | 8 | A8I | GCT | ATA | 1 | 3 | All | 0 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | AY.101 | 0.001471 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | AY.102 | 0.00008 |
ORF10 | 8 | A8P | Gct | Cct | 3 | 3 | AY.103 | 0.000019 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | AY.119 | 0.000106 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | AY.23 | 0.000209 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | AY.24 | 0.001293 |
ORF10 | 8 | A8del2 | GCt | --t | 3 | 3 | AY.25 | 0.000018 |
ORF10 | 8 | A8del | GCT | --- | 3 | 3 | AY.26 | 0.000085 |
ORF10 | 8 | A8A | gcT | gcC | 3 | 3 | AY.29.1 | 0.000662 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | AY.39 | 0.000074 |
ORF10 | 8 | A8del | GCT | --- | 3 | 3 | AY.39 | 0.000074 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | AY.42 | 0.000121 |
ORF10 | 8 | A8del | GCT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF10 | 8 | A8D | gCt | gAt | 3 | 3 | AY.43 | 0.000013 |
ORF10 | 8 | A8del2 | GCt | --t | 3 | 3 | AY.44 | 0.000018 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 3 | AY.46 | 0.000208 |
ORF10 | 8 | A8V | gCT | gTC | 1 | 3 | AY.46 | 0.000104 |
ORF10 | 8 | A8del | GCT | --- | 3 | 3 | AY.5 | 0.000062 |
ORF10 | 8 | A8del2 | GCt | --t | 3 | 3 | AY.5 | 0.000062 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | AY.54 | 0.000286 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | AY.71 | 0.001425 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | AY.88 | 0.002653 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | AY.98 | 0.000237 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | AY.98.1 | 0.000145 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | B.1.1 | 0.000054 |
ORF10 | 8 | A8del | GCT | --- | 3 | 3 | B.1.1.222 | 0.000612 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.1.280 | 0.009259 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.1.316 | 0.002775 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | B.1.1.448 | 0.006098 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | B.1.1.70 | 0.001023 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.139 | 0.002199 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | B.1.177 | 0.00004 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | B.1.177.4 | 0.000633 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.177.54 | 0.001819 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | B.1.177.86 | 0.00055 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.221 | 0.000213 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.240 | 0.000647 |
ORF10 | 8 | A8del2 | GCt | --t | 3 | 3 | B.1.258.11 | 0.001189 |
ORF10 | 8 | A8S | Gct | Tct | 3 | 3 | B.1.3 | 0.007853 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.416 | 0.003807 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | B.1.427 | 0.000151 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.521 | 0.014925 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.523 | 0.007353 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.525 | 0.000339 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | B.1.526 | 0.000071 |
ORF10 | 8 | A8V | gCt | gTt | 3 | 3 | B.1.564 | 0.001278 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | B.1.595.2 | 0.12 |
ORF10 | 8 | A8del | GCT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF10 | 8 | A8del2 | GCt | --t | 3 | 3 | B.1.596 | 0.000261 |
ORF10 | 8 | A8R | GCt | CGt | 2 | 3 | B.1.617.2 | 0.000008 |
ORF10 | 8 | A8R | GCT | CGC | 1 | 3 | B.1.617.2 | 0.000004 |
ORF10 | 8 | A8del1 | gcT | gc- | 3 | 3 | B.1.621 | 0.000266 |
ORF10 | 8 | A8A | gcT | gcC | 3 | 3 | B.1.637 | 0.000219 |
ORF10 | 8 | A8T | Gct | Act | 3 | 3 | C.4 | 0.03 |
ORF10 | 8 | A8A | gcT | gcC | 3 | 3 | D.2 | 0.000225 |
ORF10 | 8 | A8A | gcT | gcC | 3 | 3 | P.1 | 0.000047 |
ORF10 | 8 | A8del | GCT | --- | 3 | 3 | P.1 | 0.000047 |
ORF10 | 8 | A8A | gcT | gcC | 3 | 3 | Q.1 | 0.000379 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | 0.111111 | |
ORF10 | 8 | A8T | Gct | Act | 2 | 2 | AY.100 | 0.000092 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.100 | 0.000092 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.100 | 0.000092 |
ORF10 | 8 | A8del | GCT | --- | 2 | 2 | AY.100 | 0.000092 |
ORF10 | 8 | A8T | Gct | Act | 2 | 2 | AY.103 | 0.000012 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.108 | 0.002205 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.109 | 0.001479 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | AY.114 | 0.000462 |
ORF10 | 8 | A8A | gcT | gcC | 2 | 2 | AY.121 | 0.000271 |
ORF10 | 8 | A8del | GCT | --- | 2 | 2 | AY.16 | 0.000759 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF10 | 8 | A8T | Gct | Act | 2 | 2 | AY.39.1 | 0.000079 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.41 | 0.000588 |
ORF10 | 8 | A8D | gCt | gAt | 2 | 2 | AY.44 | 0.000012 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.45 | 0.000243 |
ORF10 | 8 | A8T | Gct | Act | 2 | 2 | AY.45 | 0.000243 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.46 | 0.000208 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.46.6 | 0.000144 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | AY.47 | 0.000062 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | AY.5 | 0.000041 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.52 | 0.001629 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.54 | 0.000191 |
ORF10 | 8 | A8A | gcT | gcC | 2 | 2 | AY.6 | 0.000082 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.62 | 0.000871 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.7 | 0.000392 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.74 | 0.000231 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 2 | AY.75 | 0.000056 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 2 | AY.75 | 0.000056 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.84 | 0.000875 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.9 | 0.000135 |
ORF10 | 8 | A8A | gcT | gcC | 2 | 2 | AY.9.1 | 0.000167 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | AY.92 | 0.000575 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | AY.98.1 | 0.000097 |
ORF10 | 8 | A8del2 | GCt | --t | 2 | 2 | B | 0.000256 |
ORF10 | 8 | A8del1 | Gct | -ct | 1 | 2 | B | 0.000128 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 2 | B | 0.000128 |
ORF10 | 8 | A8D | gCt | gAt | 2 | 2 | B.1 | 0.000018 |
ORF10 | 8 | A8G | gCt | gGt | 2 | 2 | B.1.1 | 0.000036 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.1.163 | 0.015267 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.1.170 | 0.002494 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.1.216 | 0.001781 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.1.219 | 0.01 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | B.1.1.28 | 0.000622 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | B.1.1.298 | 0.001724 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.1.333 | 0.002153 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | B.1.1.368 | 0.006173 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF10 | 8 | A8del | GCT | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF10 | 8 | A8del | GCT | --- | 2 | 2 | B.1.128 | 0.001271 |
ORF10 | 8 | A8A | gcT | gcC | 2 | 2 | B.1.160 | 0.000062 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | B.1.160 | 0.000062 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF10 | 8 | A8A | gcT | gcC | 2 | 2 | B.1.177.62 | 0.002384 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF10 | 8 | A8D | gCt | gAt | 2 | 2 | B.1.2 | 0.000018 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.221 | 0.000142 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | B.1.221 | 0.000142 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | B.1.258 | 0.000133 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.279 | 0.001027 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 2 | B.1.311 | 0.000275 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 2 | B.1.311 | 0.000275 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.351 | 0.000059 |
ORF10 | 8 | A8A | gcT | gcC | 2 | 2 | B.1.351 | 0.000059 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.351.5 | 0.001199 |
ORF10 | 8 | A8del | GCT | --- | 2 | 2 | B.1.375 | 0.001639 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | B.1.429 | 0.000047 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.438.1 | 0.000215 |
ORF10 | 8 | A8del | GCT | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF10 | 8 | A8A | gcT | gcA | 2 | 2 | B.1.466.2 | 0.000782 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.509 | 0.001732 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.526 | 0.000047 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.548 | 0.071429 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.551 | 0.002581 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | B.1.609 | 0.000959 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.609 | 0.000959 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | B.1.637 | 0.000146 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | C.37 | 0.000232 |
ORF10 | 8 | A8A | gcT | gcC | 2 | 2 | C.37 | 0.000232 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | D.2 | 0.00015 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
ORF10 | 8 | A8T | Gct | Act | 2 | 2 | P.1 | 0.000032 |
ORF10 | 8 | A8S | Gct | Tct | 2 | 2 | P.1.14 | 0.000096 |
ORF10 | 8 | A8P | GcT | CcG | 1 | 2 | P.6 | 0.003145 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 2 | P.6 | 0.003145 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | P.7 | 0.008734 |
ORF10 | 8 | A8del1 | gcT | gc- | 2 | 2 | Q.3 | 0.00029 |
ORF10 | 8 | A8V | gCt | gTt | 2 | 2 | Q.4 | 0.00091 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | A.2 | 0.000662 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | A.2.2 | 0.001689 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | A.2.5 | 0.000499 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | A.2.5 | 0.000499 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AD.1 | 0.004115 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AE.8 | 0.000489 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AE.8 | 0.000489 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.100 | 0.000046 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.101 | 0.00049 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.101 | 0.00049 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | AY.103 | 0.000006 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.106 | 0.000335 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.106 | 0.000335 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.107 | 0.000466 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF10 | 8 | A8L | GCT | CTC | 1 | 1 | AY.108 | 0.001103 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.110 | 0.000113 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.111 | 0.000183 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.114 | 0.000231 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.117 | 0.000085 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.118 | 0.000063 |
ORF10 | 8 | A8I | GCT | ATA | 1 | 1 | AY.120 | 0.000037 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.14 | 0.000088 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.14 | 0.000088 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.16 | 0.00038 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.16.1 | 0.00047 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 1 | AY.2 | 0.000356 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 1 | AY.20 | 0.000039 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.20 | 0.000039 |
ORF10 | 8 | A8A | gcT | gcA | 1 | 1 | AY.23 | 0.00007 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | AY.23 | 0.00007 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.23 | 0.00007 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 1 | AY.25 | 0.000006 |
ORF10 | 8 | A8F | GCt | TTt | 1 | 1 | AY.25 | 0.000006 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.26 | 0.000028 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.27 | 0.000065 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.27 | 0.000065 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.27 | 0.000065 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.28 | 0.00189 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.29 | 0.000016 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.29.1 | 0.000221 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | AY.29.1 | 0.000221 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | AY.3 | 0.00001 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.30 | 0.000396 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.35 | 0.000233 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 1 | AY.36 | 0.000148 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | AY.36 | 0.000148 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | AY.39 | 0.000025 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.39 | 0.000025 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | AY.4 | 0.000002 |
ORF10 | 8 | A8G | gCt | gGt | 1 | 1 | AY.4 | 0.000002 |
ORF10 | 8 | A8A | gcT | gcA | 1 | 1 | AY.4.2 | 0.000022 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.4.2 | 0.000022 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.4.4 | 0.000409 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.4.5 | 0.000107 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.4.5 | 0.000107 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.42 | 0.00004 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 8 | A8L | GCt | CTt | 1 | 1 | AY.44 | 0.000006 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.45 | 0.000122 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
ORF10 | 8 | A8R | GCt | CGt | 1 | 1 | AY.46 | 0.000104 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.46 | 0.000104 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.46.2 | 0.000635 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.46.6 | 0.000072 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.48 | 0.000465 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | AY.5 | 0.000021 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.5.2 | 0.002463 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.5.4 | 0.000277 |
ORF10 | 8 | A8S | GcT | TcC | 1 | 1 | AY.53 | 0.000288 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.55 | 0.000917 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.58 | 0.000907 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.59 | 0.00053 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.59 | 0.00053 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.59 | 0.00053 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.61 | 0.000105 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.61 | 0.000105 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.64 | 0.000595 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.65 | 0.000533 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.66 | 0.00107 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.67 | 0.000464 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.67 | 0.000464 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.68 | 0.000274 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.69 | 0.000187 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.69 | 0.000187 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.7 | 0.000196 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.7.1 | 0.000113 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.7.1 | 0.000113 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.70 | 0.000209 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.71 | 0.000475 |
ORF10 | 8 | A8F | GCt | TTt | 1 | 1 | AY.71 | 0.000475 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.72 | 0.001361 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.73 | 0.000665 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.74 | 0.000116 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | AY.75 | 0.000056 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | AY.75 | 0.000056 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.75.1 | 0.00018 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.78 | 0.001541 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.84 | 0.000437 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.85 | 0.000427 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.9 | 0.000068 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | AY.9.2 | 0.000037 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | AY.94 | 0.000443 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 1 | AY.98.1 | 0.000048 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | AY.98.1 | 0.000048 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.99 | 0.001049 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B | 0.000128 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF10 | 8 | A8F | GCt | TTt | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.1.214 | 0.000055 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.219 | 0.005 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | B.1.1.222 | 0.000204 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.1.225 | 0.007194 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.244 | 0.015385 |
ORF10 | 8 | A8I | GCt | ATt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.279 | 0.001121 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.1.28 | 0.000311 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.305 | 0.003861 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.1.306 | 0.000438 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.1.311 | 0.000358 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.1.315 | 0.008475 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.337 | 0.003597 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.1.348 | 0.000796 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.1.354 | 0.004386 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.356 | 0.008547 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.362 | 0.005618 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.1.375 | 0.011905 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.377 | 0.001381 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.1.442 | 0.018519 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.1.47 | 0.005348 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.1.523 | 0.001563 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.104 | 0.00369 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.111 | 0.001175 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.12 | 0.008 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.128 | 0.000635 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.149 | 0.003425 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.157 | 0.002985 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.159 | 0.012195 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.160.23 | 0.004831 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.177 | 0.000013 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | B.1.177 | 0.000013 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.177 | 0.000013 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.177.10 | 0.000878 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.177.23 | 0.003236 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.177.35 | 0.000691 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.177.43 | 0.001477 |
ORF10 | 8 | A8S | GcT | TcA | 1 | 1 | B.1.177.63 | 0.002703 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.177.65 | 0.000665 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.214 | 0.003663 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.214.2 | 0.0006 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.234 | 0.000132 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.234 | 0.000132 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.234 | 0.000132 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.235 | 0.002519 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.236 | 0.002053 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.236 | 0.002053 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.237 | 0.004975 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.242 | 0.018868 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.243 | 0.00007 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.258 | 0.000067 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.260 | 0.003344 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.305 | 0.002151 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.311 | 0.000275 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.319 | 0.003049 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.329 | 0.000608 |
ORF10 | 8 | A8G | gCt | gGt | 1 | 1 | B.1.351 | 0.00003 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | B.1.351 | 0.00003 |
ORF10 | 8 | A8F | GCt | TTt | 1 | 1 | B.1.351 | 0.00003 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.351.2 | 0.000303 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.354 | 0.043478 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.356 | 0.001727 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF10 | 8 | A8F | GCt | TTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF10 | 8 | A8del1 | GCt | -Gt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.36.36 | 0.000602 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.367 | 0.000792 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.385 | 0.010638 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.397 | 0.004854 |
ORF10 | 8 | A8F | GCt | TTt | 1 | 1 | B.1.399 | 0.001934 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.399 | 0.001934 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.399 | 0.001934 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.400 | 0.000429 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.409 | 0.000781 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.422 | 0.000812 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF10 | 8 | A8A | gcT | gcA | 1 | 1 | B.1.427 | 0.00005 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.429 | 0.000024 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.453 | 0.003236 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.456 | 0.003268 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.460 | 0.017857 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.468 | 0.005714 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.478 | 0.011765 |
ORF10 | 8 | A8I | GCt | ATt | 1 | 1 | B.1.497 | 0.000315 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.502 | 0.052632 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.502 | 0.052632 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.503 | 0.002488 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.518 | 0.011765 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | B.1.526 | 0.000024 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.526 | 0.000024 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | B.1.561 | 0.000397 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.564 | 0.000426 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.568 | 0.001111 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.576 | 0.000907 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.595 | 0.000261 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.596 | 0.000087 |
ORF10 | 8 | A8L | GCT | CTC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.619 | 0.000871 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.620 | 0.000946 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | B.1.623 | 0.000536 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.623 | 0.000536 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.623 | 0.000536 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 1 | B.1.627 | 0.00202 |
ORF10 | 8 | A8G | gCt | gGt | 1 | 1 | B.1.627 | 0.00202 |
ORF10 | 8 | A8R | GCt | CGt | 1 | 1 | B.1.627 | 0.00202 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.1.628 | 0.000352 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
ORF10 | 8 | A8D | gCt | gAt | 1 | 1 | B.1.628 | 0.000352 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | B.1.632 | 0.006711 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | B.1.634 | 0.003425 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 1 | B.1.636 | 0.006711 |
ORF10 | 8 | A8del2 | GCt | --t | 1 | 1 | B.1.637 | 0.000073 |
ORF10 | 8 | A8A | gcT | gcC | 1 | 1 | B.1.70 | 0.02439 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | B.29 | 0.003509 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | B.6 | 0.00091 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | C.36.3 | 0.000567 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | C.37 | 0.000116 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | C.37 | 0.000116 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | C.39 | 0.018868 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | N.10 | 0.029412 |
ORF10 | 8 | A8P | Gct | Cct | 1 | 1 | N.5 | 0.001767 |
ORF10 | 8 | A8del2 | gCT | g-- | 1 | 1 | P.1 | 0.000016 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | P.1.1 | 0.000318 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | P.1.10 | 0.000269 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | P.1.12 | 0.000484 |
ORF10 | 8 | A8T | Gct | Act | 1 | 1 | P.1.14 | 0.000048 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | P.1.15 | 0.000232 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | P.1.6 | 0.001946 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | P.1.7 | 0.000319 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | P.1.9 | 0.004808 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | P.2 | 0.000187 |
ORF10 | 8 | A8S | Gct | Tct | 1 | 1 | P.2 | 0.000187 |
ORF10 | 8 | A8A | gcT | gcG | 1 | 1 | P.6 | 0.003145 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | Q.1 | 0.000126 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | Q.7 | 0.001111 |
ORF10 | 8 | A8del1 | gcT | gc- | 1 | 1 | Q.8 | 0.000165 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | Q.8 | 0.000165 |
ORF10 | 8 | A8V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
ORF10 | 8 | A8del | GCT | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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