CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 8

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF10	8	A8V		nonsyn	gCt	gTt	7249	7248	0.999862	29579-29581
ORF10	8	A8V		nonsyn	gCT	gTC	7249	1	0.00013795	29579-29581
ORF10	8	A8S		nonsyn	Gct	Tct	2170	2168	0.999078	29579-29581
ORF10	8	A8S		nonsyn	GcT	TcA	2170	1	0.000460829	29579-29581
ORF10	8	A8S		nonsyn	GcT	TcC	2170	1	0.000460829	29579-29581
ORF10	8	A8del		del	GCT	---	576	576	1	29579-29581
ORF10	8	A8del2		del	GCt	--t	560	552	0.985714	29579-29581
ORF10	8	A8del2		del	GCT	--N	560	7	0.0125	29579-29581
ORF10	8	A8del2		del	gCT	g--	560	1	0.00178571	29579-29581
ORF10	8	A8del1		del	gcT	gc-	494	484	0.979757	29579-29581
ORF10	8	A8del1		del	Gct	-ct	494	8	0.0161943	29579-29581
ORF10	8	A8del1		del	GcT	-cC	494	1	0.00202429	29579-29581
ORF10	8	A8del1		del	GCt	-Gt	494	1	0.00202429	29579-29581
ORF10	8	A8A		syn	gcT	gcC	401	311	0.775561	29579-29581
ORF10	8	A8A		syn	gcT	gcA	401	51	0.127182	29579-29581
ORF10	8	A8A		syn	gcT	gcG	401	39	0.0972569	29579-29581
ORF10	8	A8T		nonsyn	Gct	Act	369	369	1	29579-29581
ORF10	8	A8D		nonsyn	gCt	gAt	174	174	1	29579-29581
ORF10	8	A8G		nonsyn	gCt	gGt	21	21	1	29579-29581
ORF10	8	A8P		nonsyn	Gct	Cct	17	16	0.941176	29579-29581
ORF10	8	A8P		nonsyn	GcT	CcG	17	1	0.0588235	29579-29581
ORF10	8	A8F		nonsyn	GCt	TTt	11	11	1	29579-29581
ORF10	8	A8R		nonsyn	GCt	CGt	5	4	0.8	29579-29581
ORF10	8	A8R		nonsyn	GCT	CGC	5	1	0.2	29579-29581
ORF10	8	A8L		nonsyn	GCT	CTC	3	2	0.666667	29579-29581
ORF10	8	A8I		nonsyn	GCt	ATt	3	2	0.666667	29579-29581
ORF10	8	A8I		nonsyn	GCT	ATA	3	1	0.333333	29579-29581
ORF10	8	A8L		nonsyn	GCt	CTt	3	1	0.333333	29579-29581

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF10	8	A8V	gCt	gTt	7248	7249	All	0.001386
ORF10	8	A8V	gCT	gTC	1	7249	All	0
ORF10	8	A8V	gCt	gTt	3543	3543	AY.4	0.005514
ORF10	8	A8S	Gct	Tct	2168	2170	All	0.000415
ORF10	8	A8S	GcT	TcC	1	2170	All	0
ORF10	8	A8S	GcT	TcA	1	2170	All	0
ORF10	8	A8V	gCt	gTt	986	986	B.1.1.7	0.000883
ORF10	8	A8del	GCT	---	576	576	All	0.00011
ORF10	8	A8del2	GCt	--t	552	560	All	0.000106
ORF10	8	A8del2	GCT	--N	7	560	All	0.000001
ORF10	8	A8del2	gCT	g--	1	560	All	0
ORF10	8	A8S	Gct	Tct	532	532	AY.44	0.003238
ORF10	8	A8del1	gcT	gc-	484	494	All	0.000093
ORF10	8	A8del1	Gct	-ct	8	494	All	0.000002
ORF10	8	A8del1	GcT	-cC	1	494	All	0
ORF10	8	A8del1	GCt	-Gt	1	494	All	0
ORF10	8	A8del2	GCt	--t	420	420	B.1.627	0.848485
ORF10	8	A8V	gCt	gTt	408	408	B.1.2	0.003593
ORF10	8	A8A	gcT	gcC	311	401	All	0.000059
ORF10	8	A8A	gcT	gcA	51	401	All	0.00001
ORF10	8	A8A	gcT	gcG	39	401	All	0.000007
ORF10	8	A8S	Gct	Tct	387	387	AY.3	0.003849
ORF10	8	A8T	Gct	Act	369	369	All	0.000071
ORF10	8	A8V	gCt	gTt	259	259	P.1.1	0.082274
ORF10	8	A8D	gCt	gAt	174	174	All	0.000033
ORF10	8	A8S	Gct	Tct	163	163	AY.29	0.002571
ORF10	8	A8del	GCT	---	155	155	AY.4	0.000241
ORF10	8	A8V	gCt	gTt	147	147	B.1.617.2	0.000554
ORF10	8	A8S	Gct	Tct	143	143	AY.25	0.00086
ORF10	8	A8S	Gct	Tct	131	131	B.1.1.7	0.000117
ORF10	8	A8S	Gct	Tct	128	128	B.1.427	0.006464
ORF10	8	A8V	gCt	gTt	124	124	AY.103	0.00077
ORF10	8	A8S	Gct	Tct	123	123	AY.43	0.000545
ORF10	8	A8D	gCt	gAt	119	119	B.1.1.7	0.000107
ORF10	8	A8A	gcT	gcC	74	119	B.1.1.7	0.000066
ORF10	8	A8A	gcT	gcA	33	119	B.1.1.7	0.00003
ORF10	8	A8A	gcT	gcG	12	119	B.1.1.7	0.000011
ORF10	8	A8V	gCt	gTt	117	117	B.1.258.17	0.012165
ORF10	8	A8V	gCt	gTt	92	92	AY.92	0.026429
ORF10	8	A8S	Gct	Tct	89	89	B.1.617.2	0.000335
ORF10	8	A8V	gCt	gTt	87	87	AY.43	0.000385
ORF10	8	A8V	gCt	gTt	85	85	B.1.429	0.002
ORF10	8	A8V	gCt	gTt	81	81	AY.3	0.000806
ORF10	8	A8del	GCT	---	79	79	B.1.1.7	0.000071
ORF10	8	A8V	gCt	gTt	76	76	B.1	0.000696
ORF10	8	A8S	Gct	Tct	68	68	AY.33	0.004541
ORF10	8	A8V	gCt	gTt	68	68	AY.44	0.000414
ORF10	8	A8V	gCt	gTt	67	67	AY.102	0.001776
ORF10	8	A8del2	GCt	--t	54	61	AY.26	0.001529
ORF10	8	A8del2	GCT	--N	7	61	AY.26	0.000198
ORF10	8	A8T	Gct	Act	61	61	B.1.617.2	0.00023
ORF10	8	A8S	Gct	Tct	54	54	AY.4	0.000084
ORF10	8	A8V	gCt	gTt	51	51	AY.84	0.02231
ORF10	8	A8V	gCt	gTt	49	49	P.1	0.000772
ORF10	8	A8del1	gcT	gc-	48	48	B.1.1.7	0.000043
ORF10	8	A8V	gCt	gTt	45	45	B.1.524	0.063291
ORF10	8	A8del	GCT	---	45	45	B.1.617.2	0.000169
ORF10	8	A8del1	gcT	gc-	44	44	B.1.617.2	0.000166
ORF10	8	A8V	gCt	gTt	43	43	B.1.1	0.00078
ORF10	8	A8del	GCT	---	41	41	AY.47	0.001275
ORF10	8	A8V	gCt	gTt	41	41	B.1.526	0.000964
ORF10	8	A8V	gCt	gTt	41	41	B.1.616	1
ORF10	8	A8T	Gct	Act	37	37	AY.33	0.002471
ORF10	8	A8V	gCt	gTt	35	35	AY.25	0.000211
ORF10	8	A8V	gCt	gTt	34	34	AY.9.2	0.001249
ORF10	8	A8V	gCt	gTt	33	33	B.1.351	0.000981
ORF10	8	A8del	GCT	---	33	33	B.1.526	0.000776
ORF10	8	A8S	Gct	Tct	32	32	AY.26	0.000906
ORF10	8	A8del1	gcT	gc-	32	32	B.1.1.41	0.202532
ORF10	8	A8T	Gct	Act	32	32	D.2	0.002401
ORF10	8	A8T	Gct	Act	29	29	AY.118	0.001817
ORF10	8	A8A	gcT	gcC	27	28	B.1.2	0.000238
ORF10	8	A8A	gcT	gcG	1	28	B.1.2	0.000009
ORF10	8	A8V	gCt	gTt	27	27	B.1.1.189	0.040847
ORF10	8	A8del	GCT	---	26	26	AY.25	0.000156
ORF10	8	A8del1	gcT	gc-	26	26	AY.4	0.00004
ORF10	8	A8del1	gcT	gc-	24	25	AY.44	0.000146
ORF10	8	A8del1	Gct	-ct	1	25	AY.44	0.000006
ORF10	8	A8T	Gct	Act	25	25	B.1.1.7	0.000022
ORF10	8	A8V	gCt	gTt	24	24	B.1.177	0.000316
ORF10	8	A8T	Gct	Act	23	23	AY.119	0.000812
ORF10	8	A8del1	gcT	gc-	22	22	AL.1	0.285714
ORF10	8	A8del1	gcT	gc-	21	22	AY.3	0.000209
ORF10	8	A8del1	Gct	-ct	1	22	AY.3	0.00001
ORF10	8	A8G	gCt	gGt	21	21	All	0.000004
ORF10	8	A8V	gCt	gTt	21	21	AY.3.1	0.00179
ORF10	8	A8del1	gcT	gc-	21	21	AY.35	0.004894
ORF10	8	A8V	gCt	gTt	21	21	B.1.311	0.005766
ORF10	8	A8del2	GCt	--t	21	21	B.1.617.2	0.000079
ORF10	8	A8V	gCt	gTt	20	20	AY.42	0.000805
ORF10	8	A8del	GCT	---	20	20	B.1.1.519	0.000794
ORF10	8	A8del	GCT	---	20	20	B.1.160.14	0.042373
ORF10	8	A8A	gcT	gcC	16	20	B.1.617.2	0.00006
ORF10	8	A8A	gcT	gcG	3	20	B.1.617.2	0.000011
ORF10	8	A8A	gcT	gcA	1	20	B.1.617.2	0.000004
ORF10	8	A8del1	gcT	gc-	19	19	AY.39	0.00047
ORF10	8	A8V	gCt	gTt	19	19	AY.39	0.00047
ORF10	8	A8A	gcT	gcC	19	19	B.1.1	0.000345
ORF10	8	A8del1	gcT	gc-	17	18	B.1.2	0.00015
ORF10	8	A8del1	GcT	-cC	1	18	B.1.2	0.000009
ORF10	8	A8S	Gct	Tct	18	18	R.1	0.00162
ORF10	8	A8P	Gct	Cct	16	17	All	0.000003
ORF10	8	A8P	GcT	CcG	1	17	All	0
ORF10	8	A8A	gcT	gcC	17	17	AY.103	0.000106
ORF10	8	A8S	Gct	Tct	17	17	AY.103	0.000106
ORF10	8	A8V	gCt	gTt	17	17	AY.113	0.002421
ORF10	8	A8T	Gct	Act	16	16	AY.3	0.000159
ORF10	8	A8S	Gct	Tct	16	16	AY.5.4	0.004427
ORF10	8	A8V	gCt	gTt	16	16	B.1.36	0.002334
ORF10	8	A8S	Gct	Tct	15	15	AY.114	0.003467
ORF10	8	A8T	Gct	Act	15	15	AY.43	0.000066
ORF10	8	A8S	Gct	Tct	15	15	B.1	0.000137
ORF10	8	A8del1	gcT	gc-	14	15	B.1	0.000128
ORF10	8	A8del1	Gct	-ct	1	15	B.1	0.000009
ORF10	8	A8T	Gct	Act	14	14	AY.4	0.000022
ORF10	8	A8T	Gct	Act	14	14	AY.5	0.000289
ORF10	8	A8V	gCt	gTt	13	13	AY.20	0.000505
ORF10	8	A8V	gCt	gTt	13	13	AY.26	0.000368
ORF10	8	A8V	gCt	gTt	13	13	AY.4.2	0.000282
ORF10	8	A8T	Gct	Act	13	13	AY.44	0.000079
ORF10	8	A8V	gCt	gTt	13	13	B.1.1.434	0.004531
ORF10	8	A8V	gCt	gTt	13	13	B.1.160.28	0.038012
ORF10	8	A8A	gcT	gcA	10	13	B.1.429	0.000235
ORF10	8	A8A	gcT	gcC	2	13	B.1.429	0.000047
ORF10	8	A8A	gcT	gcG	1	13	B.1.429	0.000024
ORF10	8	A8V	gCt	gTt	12	12	AY.120.1	0.003852
ORF10	8	A8del2	GCt	--t	12	12	AY.4	0.000019
ORF10	8	A8del1	gcT	gc-	12	12	AY.4.2	0.00026
ORF10	8	A8S	Gct	Tct	12	12	B.1.1	0.000218
ORF10	8	A8S	Gct	Tct	12	12	B.1.2	0.000106
ORF10	8	A8V	gCt	gTt	12	12	B.1.258.7	0.022945
ORF10	8	A8D	gCt	gAt	12	12	B.1.427	0.000606
ORF10	8	A8A	gcT	gcC	12	12	P.1.14	0.000574
ORF10	8	A8F	GCt	TTt	11	11	All	0.000002
ORF10	8	A8S	Gct	Tct	11	11	AY.119	0.000388
ORF10	8	A8del1	gcT	gc-	11	11	AY.25	0.000066
ORF10	8	A8T	Gct	Act	11	11	AY.26	0.000311
ORF10	8	A8A	gcT	gcC	9	11	AY.4	0.000014
ORF10	8	A8A	gcT	gcG	1	11	AY.4	0.000002
ORF10	8	A8A	gcT	gcA	1	11	AY.4	0.000002
ORF10	8	A8V	gCt	gTt	11	11	B.1.1.317	0.004529
ORF10	8	A8T	Gct	Act	11	11	B.1.177	0.000145
ORF10	8	A8del	GCT	---	11	11	B.1.2	0.000097
ORF10	8	A8del1	gcT	gc-	11	11	B.1.596	0.000959
ORF10	8	A8V	gCt	gTt	10	10	AY.120	0.000372
ORF10	8	A8S	Gct	Tct	10	10	AY.16	0.003797
ORF10	8	A8del	GCT	---	10	10	AY.3	0.000099
ORF10	8	A8V	gCt	gTt	10	10	AY.39.1	0.000396
ORF10	8	A8S	Gct	Tct	10	10	AY.5	0.000206
ORF10	8	A8V	gCt	gTt	10	10	B.1.1.519	0.000397
ORF10	8	A8V	gCt	gTt	10	10	B.1.160	0.000312
ORF10	8	A8A	gcT	gcC	10	10	B.1.221	0.00071
ORF10	8	A8V	gCt	gTt	10	10	B.1.243	0.000696
ORF10	8	A8V	gCt	gTt	10	10	B.1.596	0.000871
ORF10	8	A8V	gCt	gTt	10	10	P.1.14	0.000478
ORF10	8	A8del1	gcT	gc-	9	9	AD.2	0.001971
ORF10	8	A8D	gCt	gAt	9	9	AY.25	0.000054
ORF10	8	A8A	gcT	gcC	9	9	AY.44	0.000055
ORF10	8	A8V	gCt	gTt	9	9	AY.75	0.000504
ORF10	8	A8del	GCT	---	9	9	B.1	0.000082
ORF10	8	A8A	gcT	gcG	9	9	B.1.525	0.001018
ORF10	8	A8D	gCt	gAt	9	9	Q.8	0.001484
ORF10	8	A8del	GCT	---	8	8	AY.102	0.000212
ORF10	8	A8del1	gcT	gc-	8	8	AY.103	0.00005
ORF10	8	A8G	gCt	gGt	8	8	AY.103	0.00005
ORF10	8	A8T	Gct	Act	8	8	AY.111	0.001465
ORF10	8	A8V	gCt	gTt	8	8	AY.119	0.000282
ORF10	8	A8S	Gct	Tct	8	8	AY.20	0.000311
ORF10	8	A8S	Gct	Tct	8	8	AY.4.2	0.000174
ORF10	8	A8A	gcT	gcC	4	8	AY.43	0.000018
ORF10	8	A8A	gcT	gcG	3	8	AY.43	0.000013
ORF10	8	A8A	gcT	gcA	1	8	AY.43	0.000004
ORF10	8	A8del	GCT	---	8	8	AY.44	0.000049
ORF10	8	A8V	gCt	gTt	8	8	AY.46.6	0.000578
ORF10	8	A8S	Gct	Tct	8	8	AY.47	0.000249
ORF10	8	A8V	gCt	gTt	8	8	B.1.1.398	0.025806
ORF10	8	A8T	Gct	Act	8	8	B.1.2	0.00007
ORF10	8	A8G	gCt	gGt	8	8	B.1.609	0.003835
ORF10	8	A8V	gCt	gTt	8	8	B.1.621	0.000708
ORF10	8	A8V	gCt	gTt	8	8	C.16	0.008484
ORF10	8	A8del1	gcT	gc-	7	7	AY.102	0.000186
ORF10	8	A8del	GCT	---	7	7	AY.103	0.000043
ORF10	8	A8A	gcT	gcC	7	7	AY.118	0.000439
ORF10	8	A8del1	gcT	gc-	7	7	AY.24	0.003017
ORF10	8	A8T	Gct	Act	7	7	AY.25	0.000042
ORF10	8	A8del	GCT	---	7	7	AY.37	0.002212
ORF10	8	A8V	gCt	gTt	7	7	AY.68	0.001916
ORF10	8	A8A	gcT	gcC	7	7	B.1	0.000064
ORF10	8	A8del2	GCt	--t	7	7	B.1	0.000064
ORF10	8	A8V	gCt	gTt	7	7	B.1.1.63	0.002701
ORF10	8	A8V	gCt	gTt	7	7	B.1.258	0.000466
ORF10	8	A8V	gCt	gTt	7	7	B.1.36.1	0.007982
ORF10	8	A8V	gCt	gTt	7	7	B.1.427	0.000353
ORF10	8	A8S	Gct	Tct	7	7	B.1.568	0.007778
ORF10	8	A8S	Gct	Tct	6	6	AY.117	0.000507
ORF10	8	A8del	GCT	---	6	6	AY.118	0.000376
ORF10	8	A8V	gCt	gTt	6	6	AY.34	0.000582
ORF10	8	A8V	gCt	gTt	6	6	AY.47	0.000187
ORF10	8	A8V	gCt	gTt	6	6	AY.6	0.000247
ORF10	8	A8A	gcT	gcC	6	6	AY.61	0.000629
ORF10	8	A8V	gCt	gTt	6	6	AY.71	0.00285
ORF10	8	A8T	Gct	Act	6	6	B.1	0.000055
ORF10	8	A8V	gCt	gTt	6	6	B.1.1.318	0.001811
ORF10	8	A8del1	gcT	gc-	6	6	B.1.160.31	0.048387
ORF10	8	A8V	gCt	gTt	6	6	B.1.206	0.004894
ORF10	8	A8S	Gct	Tct	6	6	B.1.232	0.003224
ORF10	8	A8S	Gct	Tct	6	6	B.1.561	0.002382
ORF10	8	A8del1	gcT	gc-	6	6	P.1	0.000095
ORF10	8	A8R	GCt	CGt	4	5	All	0.000001
ORF10	8	A8R	GCT	CGC	1	5	All	0
ORF10	8	A8A	gcT	gcC	5	5	AY.102	0.000133
ORF10	8	A8A	gcT	gcC	5	5	AY.120	0.000186
ORF10	8	A8V	gCt	gTt	5	5	AY.121	0.000677
ORF10	8	A8V	gCt	gTt	5	5	AY.23	0.000349
ORF10	8	A8A	gcT	gcC	5	5	AY.25	0.00003
ORF10	8	A8A	gcT	gcC	5	5	AY.3	0.00005
ORF10	8	A8F	GCt	TTt	5	5	AY.3	0.00005
ORF10	8	A8S	Gct	Tct	5	5	AY.42	0.000201
ORF10	8	A8del1	gcT	gc-	5	5	AY.43	0.000022
ORF10	8	A8del1	gcT	gc-	5	5	AY.59	0.002648
ORF10	8	A8S	Gct	Tct	5	5	AY.75	0.00028
ORF10	8	A8D	gCt	gAt	5	5	B.1.1.214	0.000277
ORF10	8	A8V	gCt	gTt	5	5	B.1.1.214	0.000277
ORF10	8	A8V	gCt	gTt	5	5	B.1.1.39	0.002548
ORF10	8	A8V	gCt	gTt	5	5	B.1.1.70	0.001705
ORF10	8	A8V	gCt	gTt	5	5	B.1.151	0.055556
ORF10	8	A8del	GCT	---	5	5	B.1.177	0.000066
ORF10	8	A8A	gcT	gcC	3	5	B.1.177	0.00004
ORF10	8	A8A	gcT	gcG	2	5	B.1.177	0.000026
ORF10	8	A8V	gCt	gTt	5	5	B.1.617.1	0.000645
ORF10	8	A8V	gCt	gTt	5	5	B.1.637	0.000365
ORF10	8	A8V	gCt	gTt	5	5	B.40	0.001821
ORF10	8	A8del1	gcT	gc-	5	5	C.36.3	0.002836
ORF10	8	A8T	Gct	Act	4	4	AY.102	0.000106
ORF10	8	A8A	gcT	gcC	4	4	AY.119	0.000141
ORF10	8	A8V	gCt	gTt	4	4	AY.13	0.000644
ORF10	8	A8V	gCt	gTt	4	4	AY.17	0.032787
ORF10	8	A8V	gCt	gTt	4	4	AY.30	0.001583
ORF10	8	A8V	gCt	gTt	4	4	AY.38	0.001997
ORF10	8	A8V	gCt	gTt	4	4	AY.5	0.000083
ORF10	8	A8del	GCT	---	4	4	AY.54	0.000381
ORF10	8	A8V	gCt	gTt	4	4	AY.61	0.000419
ORF10	8	A8V	gCt	gTt	4	4	AY.8	0.002424
ORF10	8	A8V	gCt	gTt	4	4	AY.86	0.00332
ORF10	8	A8del	GCT	---	4	4	AY.9	0.00027
ORF10	8	A8del	GCT	---	4	4	B.1.1	0.000073
ORF10	8	A8del1	gcT	gc-	4	4	B.1.1.519	0.000159
ORF10	8	A8del2	GCt	--t	4	4	B.1.1.7	0.000004
ORF10	8	A8P	Gct	Cct	4	4	B.1.1.7	0.000004
ORF10	8	A8del	GCT	---	4	4	B.1.160	0.000125
ORF10	8	A8V	gCt	gTt	4	4	B.1.350	0.01173
ORF10	8	A8S	Gct	Tct	4	4	B.1.409	0.003125
ORF10	8	A8del1	Gct	-ct	4	4	B.1.627	0.008081
ORF10	8	A8S	Gct	Tct	4	4	P.1	0.000063
ORF10	8	A8V	gCt	gTt	4	4	P.1.15	0.000929
ORF10	8	A8A	gcT	gcC	3	3	A	0.001161
ORF10	8	A8V	gCt	gTt	3	3	A.1	0.000846
ORF10	8	A8L	GCT	CTC	2	3	All	0
ORF10	8	A8I	GCt	ATt	2	3	All	0
ORF10	8	A8L	GCt	CTt	1	3	All	0
ORF10	8	A8I	GCT	ATA	1	3	All	0
ORF10	8	A8V	gCt	gTt	3	3	AY.101	0.001471
ORF10	8	A8S	Gct	Tct	3	3	AY.102	0.00008
ORF10	8	A8P	Gct	Cct	3	3	AY.103	0.000019
ORF10	8	A8del1	gcT	gc-	3	3	AY.119	0.000106
ORF10	8	A8S	Gct	Tct	3	3	AY.23	0.000209
ORF10	8	A8V	gCt	gTt	3	3	AY.24	0.001293
ORF10	8	A8del2	GCt	--t	3	3	AY.25	0.000018
ORF10	8	A8del	GCT	---	3	3	AY.26	0.000085
ORF10	8	A8A	gcT	gcC	3	3	AY.29.1	0.000662
ORF10	8	A8S	Gct	Tct	3	3	AY.39	0.000074
ORF10	8	A8del	GCT	---	3	3	AY.39	0.000074
ORF10	8	A8del1	gcT	gc-	3	3	AY.42	0.000121
ORF10	8	A8del	GCT	---	3	3	AY.43	0.000013
ORF10	8	A8D	gCt	gAt	3	3	AY.43	0.000013
ORF10	8	A8del2	GCt	--t	3	3	AY.44	0.000018
ORF10	8	A8V	gCt	gTt	2	3	AY.46	0.000208
ORF10	8	A8V	gCT	gTC	1	3	AY.46	0.000104
ORF10	8	A8del	GCT	---	3	3	AY.5	0.000062
ORF10	8	A8del2	GCt	--t	3	3	AY.5	0.000062
ORF10	8	A8V	gCt	gTt	3	3	AY.54	0.000286
ORF10	8	A8S	Gct	Tct	3	3	AY.71	0.001425
ORF10	8	A8del1	gcT	gc-	3	3	AY.88	0.002653
ORF10	8	A8S	Gct	Tct	3	3	AY.98	0.000237
ORF10	8	A8S	Gct	Tct	3	3	AY.98.1	0.000145
ORF10	8	A8del1	gcT	gc-	3	3	B.1.1	0.000054
ORF10	8	A8del	GCT	---	3	3	B.1.1.222	0.000612
ORF10	8	A8V	gCt	gTt	3	3	B.1.1.28	0.000934
ORF10	8	A8V	gCt	gTt	3	3	B.1.1.280	0.009259
ORF10	8	A8V	gCt	gTt	3	3	B.1.1.316	0.002775
ORF10	8	A8del1	gcT	gc-	3	3	B.1.1.448	0.006098
ORF10	8	A8del1	gcT	gc-	3	3	B.1.1.70	0.001023
ORF10	8	A8V	gCt	gTt	3	3	B.1.139	0.002199
ORF10	8	A8S	Gct	Tct	3	3	B.1.177	0.00004
ORF10	8	A8S	Gct	Tct	3	3	B.1.177.4	0.000633
ORF10	8	A8V	gCt	gTt	3	3	B.1.177.54	0.001819
ORF10	8	A8S	Gct	Tct	3	3	B.1.177.86	0.00055
ORF10	8	A8V	gCt	gTt	3	3	B.1.221	0.000213
ORF10	8	A8V	gCt	gTt	3	3	B.1.240	0.000647
ORF10	8	A8del2	GCt	--t	3	3	B.1.258.11	0.001189
ORF10	8	A8S	Gct	Tct	3	3	B.1.3	0.007853
ORF10	8	A8V	gCt	gTt	3	3	B.1.416	0.003807
ORF10	8	A8del1	gcT	gc-	3	3	B.1.427	0.000151
ORF10	8	A8V	gCt	gTt	3	3	B.1.521	0.014925
ORF10	8	A8V	gCt	gTt	3	3	B.1.523	0.007353
ORF10	8	A8V	gCt	gTt	3	3	B.1.525	0.000339
ORF10	8	A8del1	gcT	gc-	3	3	B.1.526	0.000071
ORF10	8	A8V	gCt	gTt	3	3	B.1.564	0.001278
ORF10	8	A8del1	gcT	gc-	3	3	B.1.595.2	0.12
ORF10	8	A8del	GCT	---	3	3	B.1.596	0.000261
ORF10	8	A8del2	GCt	--t	3	3	B.1.596	0.000261
ORF10	8	A8R	GCt	CGt	2	3	B.1.617.2	0.000008
ORF10	8	A8R	GCT	CGC	1	3	B.1.617.2	0.000004
ORF10	8	A8del1	gcT	gc-	3	3	B.1.621	0.000266
ORF10	8	A8A	gcT	gcC	3	3	B.1.637	0.000219
ORF10	8	A8T	Gct	Act	3	3	C.4	0.03
ORF10	8	A8A	gcT	gcC	3	3	D.2	0.000225
ORF10	8	A8A	gcT	gcC	3	3	P.1	0.000047
ORF10	8	A8del	GCT	---	3	3	P.1	0.000047
ORF10	8	A8A	gcT	gcC	3	3	Q.1	0.000379
ORF10	8	A8del1	gcT	gc-	2	2		0.111111
ORF10	8	A8T	Gct	Act	2	2	AY.100	0.000092
ORF10	8	A8V	gCt	gTt	2	2	AY.100	0.000092
ORF10	8	A8S	Gct	Tct	2	2	AY.100	0.000092
ORF10	8	A8del	GCT	---	2	2	AY.100	0.000092
ORF10	8	A8T	Gct	Act	2	2	AY.103	0.000012
ORF10	8	A8V	gCt	gTt	2	2	AY.108	0.002205
ORF10	8	A8V	gCt	gTt	2	2	AY.109	0.001479
ORF10	8	A8del1	gcT	gc-	2	2	AY.114	0.000462
ORF10	8	A8A	gcT	gcC	2	2	AY.121	0.000271
ORF10	8	A8del	GCT	---	2	2	AY.16	0.000759
ORF10	8	A8V	gCt	gTt	2	2	AY.16.1	0.00094
ORF10	8	A8T	Gct	Act	2	2	AY.39.1	0.000079
ORF10	8	A8V	gCt	gTt	2	2	AY.41	0.000588
ORF10	8	A8D	gCt	gAt	2	2	AY.44	0.000012
ORF10	8	A8V	gCt	gTt	2	2	AY.45	0.000243
ORF10	8	A8T	Gct	Act	2	2	AY.45	0.000243
ORF10	8	A8S	Gct	Tct	2	2	AY.46	0.000208
ORF10	8	A8S	Gct	Tct	2	2	AY.46.6	0.000144
ORF10	8	A8del1	gcT	gc-	2	2	AY.47	0.000062
ORF10	8	A8del1	gcT	gc-	2	2	AY.5	0.000041
ORF10	8	A8S	Gct	Tct	2	2	AY.52	0.001629
ORF10	8	A8S	Gct	Tct	2	2	AY.54	0.000191
ORF10	8	A8A	gcT	gcC	2	2	AY.6	0.000082
ORF10	8	A8V	gCt	gTt	2	2	AY.62	0.000871
ORF10	8	A8S	Gct	Tct	2	2	AY.7	0.000392
ORF10	8	A8S	Gct	Tct	2	2	AY.74	0.000231
ORF10	8	A8A	gcT	gcG	1	2	AY.75	0.000056
ORF10	8	A8A	gcT	gcC	1	2	AY.75	0.000056
ORF10	8	A8S	Gct	Tct	2	2	AY.84	0.000875
ORF10	8	A8S	Gct	Tct	2	2	AY.9	0.000135
ORF10	8	A8A	gcT	gcC	2	2	AY.9.1	0.000167
ORF10	8	A8V	gCt	gTt	2	2	AY.9.2.1	0.003953
ORF10	8	A8S	Gct	Tct	2	2	AY.92	0.000575
ORF10	8	A8V	gCt	gTt	2	2	AY.98.1	0.000097
ORF10	8	A8del2	GCt	--t	2	2	B	0.000256
ORF10	8	A8del1	Gct	-ct	1	2	B	0.000128
ORF10	8	A8del1	gcT	gc-	1	2	B	0.000128
ORF10	8	A8D	gCt	gAt	2	2	B.1	0.000018
ORF10	8	A8G	gCt	gGt	2	2	B.1.1	0.000036
ORF10	8	A8S	Gct	Tct	2	2	B.1.1.163	0.015267
ORF10	8	A8V	gCt	gTt	2	2	B.1.1.170	0.002494
ORF10	8	A8S	Gct	Tct	2	2	B.1.1.216	0.001781
ORF10	8	A8V	gCt	gTt	2	2	B.1.1.219	0.01
ORF10	8	A8V	gCt	gTt	2	2	B.1.1.222	0.000408
ORF10	8	A8del1	gcT	gc-	2	2	B.1.1.28	0.000622
ORF10	8	A8V	gCt	gTt	2	2	B.1.1.294	0.002532
ORF10	8	A8del1	gcT	gc-	2	2	B.1.1.298	0.001724
ORF10	8	A8S	Gct	Tct	2	2	B.1.1.333	0.002153
ORF10	8	A8del1	gcT	gc-	2	2	B.1.1.368	0.006173
ORF10	8	A8V	gCt	gTt	2	2	B.1.1.416	0.00181
ORF10	8	A8del	GCT	---	2	2	B.1.1.70	0.000682
ORF10	8	A8del	GCT	---	2	2	B.1.128	0.001271
ORF10	8	A8A	gcT	gcC	2	2	B.1.160	0.000062
ORF10	8	A8del1	gcT	gc-	2	2	B.1.160	0.000062
ORF10	8	A8V	gCt	gTt	2	2	B.1.177.12	0.000303
ORF10	8	A8A	gcT	gcC	2	2	B.1.177.62	0.002384
ORF10	8	A8V	gCt	gTt	2	2	B.1.177.7	0.00033
ORF10	8	A8D	gCt	gAt	2	2	B.1.2	0.000018
ORF10	8	A8S	Gct	Tct	2	2	B.1.221	0.000142
ORF10	8	A8del1	gcT	gc-	2	2	B.1.221	0.000142
ORF10	8	A8del1	gcT	gc-	2	2	B.1.258	0.000133
ORF10	8	A8V	gCt	gTt	2	2	B.1.279	0.001027
ORF10	8	A8A	gcT	gcC	1	2	B.1.311	0.000275
ORF10	8	A8A	gcT	gcG	1	2	B.1.311	0.000275
ORF10	8	A8S	Gct	Tct	2	2	B.1.351	0.000059
ORF10	8	A8A	gcT	gcC	2	2	B.1.351	0.000059
ORF10	8	A8V	gCt	gTt	2	2	B.1.351.5	0.001199
ORF10	8	A8del	GCT	---	2	2	B.1.375	0.001639
ORF10	8	A8del1	gcT	gc-	2	2	B.1.429	0.000047
ORF10	8	A8S	Gct	Tct	2	2	B.1.438.1	0.000215
ORF10	8	A8del	GCT	---	2	2	B.1.438.1	0.000215
ORF10	8	A8A	gcT	gcA	2	2	B.1.466.2	0.000782
ORF10	8	A8V	gCt	gTt	2	2	B.1.509	0.001732
ORF10	8	A8S	Gct	Tct	2	2	B.1.526	0.000047
ORF10	8	A8V	gCt	gTt	2	2	B.1.548	0.071429
ORF10	8	A8V	gCt	gTt	2	2	B.1.551	0.002581
ORF10	8	A8V	gCt	gTt	2	2	B.1.609	0.000959
ORF10	8	A8S	Gct	Tct	2	2	B.1.609	0.000959
ORF10	8	A8S	Gct	Tct	2	2	B.1.637	0.000146
ORF10	8	A8V	gCt	gTt	2	2	C.37	0.000232
ORF10	8	A8A	gcT	gcC	2	2	C.37	0.000232
ORF10	8	A8del1	gcT	gc-	2	2	D.2	0.00015
ORF10	8	A8V	gCt	gTt	2	2	D.2	0.00015
ORF10	8	A8T	Gct	Act	2	2	P.1	0.000032
ORF10	8	A8S	Gct	Tct	2	2	P.1.14	0.000096
ORF10	8	A8P	GcT	CcG	1	2	P.6	0.003145
ORF10	8	A8P	Gct	Cct	1	2	P.6	0.003145
ORF10	8	A8V	gCt	gTt	2	2	P.7	0.008734
ORF10	8	A8del1	gcT	gc-	2	2	Q.3	0.00029
ORF10	8	A8V	gCt	gTt	2	2	Q.4	0.00091
ORF10	8	A8del	GCT	---	1	1	A.2	0.000662
ORF10	8	A8A	gcT	gcC	1	1	A.2.2	0.001689
ORF10	8	A8V	gCt	gTt	1	1	A.2.5	0.000499
ORF10	8	A8del1	gcT	gc-	1	1	A.2.5	0.000499
ORF10	8	A8del	GCT	---	1	1	AD.1	0.004115
ORF10	8	A8V	gCt	gTt	1	1	AE.8	0.000489
ORF10	8	A8S	Gct	Tct	1	1	AE.8	0.000489
ORF10	8	A8del1	gcT	gc-	1	1	AY.100	0.000046
ORF10	8	A8del	GCT	---	1	1	AY.101	0.00049
ORF10	8	A8A	gcT	gcC	1	1	AY.101	0.00049
ORF10	8	A8del1	gcT	gc-	1	1	AY.101	0.00049
ORF10	8	A8D	gCt	gAt	1	1	AY.103	0.000006
ORF10	8	A8A	gcT	gcC	1	1	AY.106	0.000335
ORF10	8	A8V	gCt	gTt	1	1	AY.106	0.000335
ORF10	8	A8S	Gct	Tct	1	1	AY.106	0.000335
ORF10	8	A8del1	gcT	gc-	1	1	AY.107	0.000466
ORF10	8	A8del	GCT	---	1	1	AY.107	0.000466
ORF10	8	A8L	GCT	CTC	1	1	AY.108	0.001103
ORF10	8	A8S	Gct	Tct	1	1	AY.110	0.000113
ORF10	8	A8del1	gcT	gc-	1	1	AY.111	0.000183
ORF10	8	A8V	gCt	gTt	1	1	AY.114	0.000231
ORF10	8	A8T	Gct	Act	1	1	AY.117	0.000085
ORF10	8	A8V	gCt	gTt	1	1	AY.118	0.000063
ORF10	8	A8I	GCT	ATA	1	1	AY.120	0.000037
ORF10	8	A8del	GCT	---	1	1	AY.120	0.000037
ORF10	8	A8del	GCT	---	1	1	AY.120.1	0.000321
ORF10	8	A8S	Gct	Tct	1	1	AY.14	0.000088
ORF10	8	A8del1	gcT	gc-	1	1	AY.14	0.000088
ORF10	8	A8V	gCt	gTt	1	1	AY.16	0.00038
ORF10	8	A8del1	gcT	gc-	1	1	AY.16.1	0.00047
ORF10	8	A8A	gcT	gcG	1	1	AY.2	0.000356
ORF10	8	A8V	gCt	gTt	1	1	AY.2	0.000356
ORF10	8	A8A	gcT	gcG	1	1	AY.20	0.000039
ORF10	8	A8del1	gcT	gc-	1	1	AY.20	0.000039
ORF10	8	A8A	gcT	gcA	1	1	AY.23	0.00007
ORF10	8	A8D	gCt	gAt	1	1	AY.23	0.00007
ORF10	8	A8T	Gct	Act	1	1	AY.23	0.00007
ORF10	8	A8del	GCT	---	1	1	AY.23	0.00007
ORF10	8	A8P	Gct	Cct	1	1	AY.25	0.000006
ORF10	8	A8F	GCt	TTt	1	1	AY.25	0.000006
ORF10	8	A8A	gcT	gcC	1	1	AY.26	0.000028
ORF10	8	A8del	GCT	---	1	1	AY.27	0.000065
ORF10	8	A8A	gcT	gcC	1	1	AY.27	0.000065
ORF10	8	A8V	gCt	gTt	1	1	AY.27	0.000065
ORF10	8	A8del1	gcT	gc-	1	1	AY.27	0.000065
ORF10	8	A8V	gCt	gTt	1	1	AY.28	0.00189
ORF10	8	A8del	GCT	---	1	1	AY.29	0.000016
ORF10	8	A8V	gCt	gTt	1	1	AY.29	0.000016
ORF10	8	A8T	Gct	Act	1	1	AY.29	0.000016
ORF10	8	A8S	Gct	Tct	1	1	AY.29.1	0.000221
ORF10	8	A8del2	GCt	--t	1	1	AY.29.1	0.000221
ORF10	8	A8del2	GCt	--t	1	1	AY.3	0.00001
ORF10	8	A8del	GCT	---	1	1	AY.3.1	0.000085
ORF10	8	A8S	Gct	Tct	1	1	AY.30	0.000396
ORF10	8	A8V	gCt	gTt	1	1	AY.35	0.000233
ORF10	8	A8P	Gct	Cct	1	1	AY.36	0.000148
ORF10	8	A8del2	GCt	--t	1	1	AY.36	0.000148
ORF10	8	A8D	gCt	gAt	1	1	AY.39	0.000025
ORF10	8	A8T	Gct	Act	1	1	AY.39	0.000025
ORF10	8	A8S	Gct	Tct	1	1	AY.39.1	0.00004
ORF10	8	A8del	GCT	---	1	1	AY.39.1	0.00004
ORF10	8	A8D	gCt	gAt	1	1	AY.4	0.000002
ORF10	8	A8G	gCt	gGt	1	1	AY.4	0.000002
ORF10	8	A8A	gcT	gcA	1	1	AY.4.2	0.000022
ORF10	8	A8T	Gct	Act	1	1	AY.4.2	0.000022
ORF10	8	A8S	Gct	Tct	1	1	AY.4.4	0.000409
ORF10	8	A8del	GCT	---	1	1	AY.4.4	0.000409
ORF10	8	A8del1	gcT	gc-	1	1	AY.4.5	0.000107
ORF10	8	A8A	gcT	gcC	1	1	AY.4.5	0.000107
ORF10	8	A8A	gcT	gcC	1	1	AY.42	0.00004
ORF10	8	A8del2	GCt	--t	1	1	AY.43	0.000004
ORF10	8	A8P	Gct	Cct	1	1	AY.43	0.000004
ORF10	8	A8L	GCt	CTt	1	1	AY.44	0.000006
ORF10	8	A8S	Gct	Tct	1	1	AY.45	0.000122
ORF10	8	A8A	gcT	gcC	1	1	AY.45	0.000122
ORF10	8	A8A	gcT	gcC	1	1	AY.46	0.000104
ORF10	8	A8R	GCt	CGt	1	1	AY.46	0.000104
ORF10	8	A8T	Gct	Act	1	1	AY.46	0.000104
ORF10	8	A8V	gCt	gTt	1	1	AY.46.2	0.000635
ORF10	8	A8T	Gct	Act	1	1	AY.46.2	0.000635
ORF10	8	A8V	gCt	gTt	1	1	AY.46.5	0.000198
ORF10	8	A8T	Gct	Act	1	1	AY.46.6	0.000072
ORF10	8	A8del1	gcT	gc-	1	1	AY.48	0.000465
ORF10	8	A8D	gCt	gAt	1	1	AY.5	0.000021
ORF10	8	A8del1	gcT	gc-	1	1	AY.5.2	0.002463
ORF10	8	A8S	Gct	Tct	1	1	AY.5.3	0.000337
ORF10	8	A8A	gcT	gcC	1	1	AY.5.4	0.000277
ORF10	8	A8S	GcT	TcC	1	1	AY.53	0.000288
ORF10	8	A8S	Gct	Tct	1	1	AY.55	0.000917
ORF10	8	A8V	gCt	gTt	1	1	AY.58	0.000907
ORF10	8	A8S	Gct	Tct	1	1	AY.59	0.00053
ORF10	8	A8T	Gct	Act	1	1	AY.59	0.00053
ORF10	8	A8V	gCt	gTt	1	1	AY.59	0.00053
ORF10	8	A8T	Gct	Act	1	1	AY.61	0.000105
ORF10	8	A8del	GCT	---	1	1	AY.61	0.000105
ORF10	8	A8del1	gcT	gc-	1	1	AY.61	0.000105
ORF10	8	A8del	GCT	---	1	1	AY.62	0.000436
ORF10	8	A8V	gCt	gTt	1	1	AY.64	0.000595
ORF10	8	A8S	Gct	Tct	1	1	AY.65	0.000533
ORF10	8	A8del	GCT	---	1	1	AY.65	0.000533
ORF10	8	A8V	gCt	gTt	1	1	AY.65	0.000533
ORF10	8	A8del1	gcT	gc-	1	1	AY.66	0.00107
ORF10	8	A8A	gcT	gcC	1	1	AY.67	0.000464
ORF10	8	A8S	Gct	Tct	1	1	AY.67	0.000464
ORF10	8	A8S	Gct	Tct	1	1	AY.68	0.000274
ORF10	8	A8T	Gct	Act	1	1	AY.69	0.000187
ORF10	8	A8V	gCt	gTt	1	1	AY.69	0.000187
ORF10	8	A8V	gCt	gTt	1	1	AY.7	0.000196
ORF10	8	A8del1	gcT	gc-	1	1	AY.7.1	0.000113
ORF10	8	A8A	gcT	gcC	1	1	AY.7.1	0.000113
ORF10	8	A8del	GCT	---	1	1	AY.7.1	0.000113
ORF10	8	A8V	gCt	gTt	1	1	AY.7.2	0.000559
ORF10	8	A8V	gCt	gTt	1	1	AY.70	0.000209
ORF10	8	A8A	gcT	gcC	1	1	AY.71	0.000475
ORF10	8	A8F	GCt	TTt	1	1	AY.71	0.000475
ORF10	8	A8T	Gct	Act	1	1	AY.72	0.001361
ORF10	8	A8del1	gcT	gc-	1	1	AY.73	0.000665
ORF10	8	A8V	gCt	gTt	1	1	AY.74	0.000116
ORF10	8	A8del	GCT	---	1	1	AY.75	0.000056
ORF10	8	A8D	gCt	gAt	1	1	AY.75	0.000056
ORF10	8	A8del2	GCt	--t	1	1	AY.75	0.000056
ORF10	8	A8del	GCT	---	1	1	AY.75.1	0.00018
ORF10	8	A8S	Gct	Tct	1	1	AY.75.1	0.00018
ORF10	8	A8V	gCt	gTt	1	1	AY.75.1	0.00018
ORF10	8	A8T	Gct	Act	1	1	AY.75.1	0.00018
ORF10	8	A8S	Gct	Tct	1	1	AY.78	0.001541
ORF10	8	A8T	Gct	Act	1	1	AY.84	0.000437
ORF10	8	A8V	gCt	gTt	1	1	AY.85	0.000427
ORF10	8	A8V	gCt	gTt	1	1	AY.9	0.000068
ORF10	8	A8A	gcT	gcC	1	1	AY.9	0.000068
ORF10	8	A8S	Gct	Tct	1	1	AY.9.2	0.000037
ORF10	8	A8del1	gcT	gc-	1	1	AY.9.2	0.000037
ORF10	8	A8A	gcT	gcC	1	1	AY.94	0.000443
ORF10	8	A8V	gCt	gTt	1	1	AY.98	0.000079
ORF10	8	A8A	gcT	gcG	1	1	AY.98.1	0.000048
ORF10	8	A8T	Gct	Act	1	1	AY.98.1	0.000048
ORF10	8	A8S	Gct	Tct	1	1	AY.99	0.001049
ORF10	8	A8S	Gct	Tct	1	1	AY.99.2	0.000092
ORF10	8	A8V	gCt	gTt	1	1	AY.99.2	0.000092
ORF10	8	A8del	GCT	---	1	1	AZ.3	0.00152
ORF10	8	A8A	gcT	gcC	1	1	B	0.000128
ORF10	8	A8P	Gct	Cct	1	1	B.1	0.000009
ORF10	8	A8F	GCt	TTt	1	1	B.1.1	0.000018
ORF10	8	A8D	gCt	gAt	1	1	B.1.1	0.000018
ORF10	8	A8del2	GCt	--t	1	1	B.1.1	0.000018
ORF10	8	A8P	Gct	Cct	1	1	B.1.1	0.000018
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.1	0.000327
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.153	0.001095
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.157	0.000913
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.192	0.002309
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.198	0.001468
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.207	0.001182
ORF10	8	A8del2	GCt	--t	1	1	B.1.1.214	0.000055
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.216	0.00089
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.219	0.005
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.220	0.001859
ORF10	8	A8T	Gct	Act	1	1	B.1.1.222	0.000204
ORF10	8	A8A	gcT	gcC	1	1	B.1.1.225	0.007194
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.244	0.015385
ORF10	8	A8I	GCt	ATt	1	1	B.1.1.27	0.00565
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.279	0.001121
ORF10	8	A8S	Gct	Tct	1	1	B.1.1.28	0.000311
ORF10	8	A8A	gcT	gcC	1	1	B.1.1.284	0.000107
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.305	0.003861
ORF10	8	A8S	Gct	Tct	1	1	B.1.1.306	0.000438
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.306	0.000438
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.311	0.000358
ORF10	8	A8del2	GCt	--t	1	1	B.1.1.311	0.000358
ORF10	8	A8S	Gct	Tct	1	1	B.1.1.315	0.008475
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.318	0.000302
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.337	0.003597
ORF10	8	A8S	Gct	Tct	1	1	B.1.1.348	0.000796
ORF10	8	A8A	gcT	gcC	1	1	B.1.1.354	0.004386
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.356	0.008547
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.362	0.005618
ORF10	8	A8S	Gct	Tct	1	1	B.1.1.37	0.000193
ORF10	8	A8S	Gct	Tct	1	1	B.1.1.375	0.011905
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.377	0.001381
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.397	0.002252
ORF10	8	A8V	gCt	gTt	1	1	B.1.1.420	0.001006
ORF10	8	A8del	GCT	---	1	1	B.1.1.420	0.001006
ORF10	8	A8S	Gct	Tct	1	1	B.1.1.442	0.018519
ORF10	8	A8D	gCt	gAt	1	1	B.1.1.47	0.005348
ORF10	8	A8del2	GCt	--t	1	1	B.1.1.47	0.005348
ORF10	8	A8A	gcT	gcC	1	1	B.1.1.519	0.00004
ORF10	8	A8del1	gcT	gc-	1	1	B.1.1.523	0.001563
ORF10	8	A8V	gCt	gTt	1	1	B.1.104	0.00369
ORF10	8	A8V	gCt	gTt	1	1	B.1.111	0.001175
ORF10	8	A8del1	gcT	gc-	1	1	B.1.12	0.008
ORF10	8	A8del1	gcT	gc-	1	1	B.1.128	0.000635
ORF10	8	A8del1	gcT	gc-	1	1	B.1.149	0.003425
ORF10	8	A8V	gCt	gTt	1	1	B.1.157	0.002985
ORF10	8	A8V	gCt	gTt	1	1	B.1.159	0.012195
ORF10	8	A8S	Gct	Tct	1	1	B.1.160	0.000031
ORF10	8	A8V	gCt	gTt	1	1	B.1.160.16	0.000929
ORF10	8	A8V	gCt	gTt	1	1	B.1.160.23	0.004831
ORF10	8	A8del1	gcT	gc-	1	1	B.1.160.7	0.002079
ORF10	8	A8del2	GCt	--t	1	1	B.1.177	0.000013
ORF10	8	A8D	gCt	gAt	1	1	B.1.177	0.000013
ORF10	8	A8del1	gcT	gc-	1	1	B.1.177	0.000013
ORF10	8	A8S	Gct	Tct	1	1	B.1.177.10	0.000878
ORF10	8	A8V	gCt	gTt	1	1	B.1.177.11	0.001698
ORF10	8	A8V	gCt	gTt	1	1	B.1.177.16	0.000664
ORF10	8	A8V	gCt	gTt	1	1	B.1.177.17	0.000821
ORF10	8	A8del1	gcT	gc-	1	1	B.1.177.21	0.000076
ORF10	8	A8A	gcT	gcC	1	1	B.1.177.23	0.003236
ORF10	8	A8del1	gcT	gc-	1	1	B.1.177.35	0.000691
ORF10	8	A8S	Gct	Tct	1	1	B.1.177.43	0.001477
ORF10	8	A8S	GcT	TcA	1	1	B.1.177.63	0.002703
ORF10	8	A8A	gcT	gcC	1	1	B.1.177.65	0.000665
ORF10	8	A8V	gCt	gTt	1	1	B.1.177.73	0.000566
ORF10	8	A8V	gCt	gTt	1	1	B.1.177.83	0.001481
ORF10	8	A8V	gCt	gTt	1	1	B.1.177.87	0.000728
ORF10	8	A8del2	GCt	--t	1	1	B.1.2	0.000009
ORF10	8	A8V	gCt	gTt	1	1	B.1.214	0.003663
ORF10	8	A8del2	GCt	--t	1	1	B.1.214.2	0.0006
ORF10	8	A8del2	GCt	--t	1	1	B.1.234	0.000132
ORF10	8	A8S	Gct	Tct	1	1	B.1.234	0.000132
ORF10	8	A8A	gcT	gcC	1	1	B.1.234	0.000132
ORF10	8	A8V	gCt	gTt	1	1	B.1.234	0.000132
ORF10	8	A8del1	gcT	gc-	1	1	B.1.235	0.002519
ORF10	8	A8del	GCT	---	1	1	B.1.236	0.002053
ORF10	8	A8A	gcT	gcC	1	1	B.1.236	0.002053
ORF10	8	A8V	gCt	gTt	1	1	B.1.237	0.004975
ORF10	8	A8S	Gct	Tct	1	1	B.1.242	0.018868
ORF10	8	A8del1	gcT	gc-	1	1	B.1.243	0.00007
ORF10	8	A8S	Gct	Tct	1	1	B.1.258	0.000067
ORF10	8	A8V	gCt	gTt	1	1	B.1.258.14	0.00098
ORF10	8	A8del	GCT	---	1	1	B.1.258.16	0.001637
ORF10	8	A8V	gCt	gTt	1	1	B.1.260	0.003344
ORF10	8	A8del1	gcT	gc-	1	1	B.1.305	0.002151
ORF10	8	A8S	Gct	Tct	1	1	B.1.311	0.000275
ORF10	8	A8A	gcT	gcC	1	1	B.1.319	0.003049
ORF10	8	A8del1	gcT	gc-	1	1	B.1.329	0.000608
ORF10	8	A8G	gCt	gGt	1	1	B.1.351	0.00003
ORF10	8	A8T	Gct	Act	1	1	B.1.351	0.00003
ORF10	8	A8F	GCt	TTt	1	1	B.1.351	0.00003
ORF10	8	A8S	Gct	Tct	1	1	B.1.351.2	0.000303
ORF10	8	A8del	GCT	---	1	1	B.1.354	0.043478
ORF10	8	A8V	gCt	gTt	1	1	B.1.356	0.001727
ORF10	8	A8A	gcT	gcC	1	1	B.1.36.1	0.00114
ORF10	8	A8F	GCt	TTt	1	1	B.1.36.1	0.00114
ORF10	8	A8V	gCt	gTt	1	1	B.1.36.10	0.004785
ORF10	8	A8V	gCt	gTt	1	1	B.1.36.16	0.001425
ORF10	8	A8V	gCt	gTt	1	1	B.1.36.17	0.000494
ORF10	8	A8V	gCt	gTt	1	1	B.1.36.18	0.00042
ORF10	8	A8del1	GCt	-Gt	1	1	B.1.36.29	0.000517
ORF10	8	A8del	GCT	---	1	1	B.1.36.29	0.000517
ORF10	8	A8V	gCt	gTt	1	1	B.1.36.29	0.000517
ORF10	8	A8A	gcT	gcC	1	1	B.1.36.29	0.000517
ORF10	8	A8A	gcT	gcC	1	1	B.1.36.36	0.000602
ORF10	8	A8S	Gct	Tct	1	1	B.1.367	0.000792
ORF10	8	A8V	gCt	gTt	1	1	B.1.369	0.000285
ORF10	8	A8V	gCt	gTt	1	1	B.1.385	0.010638
ORF10	8	A8del	GCT	---	1	1	B.1.397	0.004854
ORF10	8	A8F	GCt	TTt	1	1	B.1.399	0.001934
ORF10	8	A8V	gCt	gTt	1	1	B.1.399	0.001934
ORF10	8	A8S	Gct	Tct	1	1	B.1.399	0.001934
ORF10	8	A8del1	gcT	gc-	1	1	B.1.400	0.000429
ORF10	8	A8V	gCt	gTt	1	1	B.1.409	0.000781
ORF10	8	A8V	gCt	gTt	1	1	B.1.422	0.000812
ORF10	8	A8del	GCT	---	1	1	B.1.427	0.00005
ORF10	8	A8A	gcT	gcA	1	1	B.1.427	0.00005
ORF10	8	A8S	Gct	Tct	1	1	B.1.429	0.000024
ORF10	8	A8del2	GCt	--t	1	1	B.1.429	0.000024
ORF10	8	A8T	Gct	Act	1	1	B.1.429	0.000024
ORF10	8	A8V	gCt	gTt	1	1	B.1.438.1	0.000107
ORF10	8	A8V	gCt	gTt	1	1	B.1.453	0.003236
ORF10	8	A8V	gCt	gTt	1	1	B.1.456	0.003268
ORF10	8	A8V	gCt	gTt	1	1	B.1.460	0.017857
ORF10	8	A8del	GCT	---	1	1	B.1.466.2	0.000391
ORF10	8	A8V	gCt	gTt	1	1	B.1.466.2	0.000391
ORF10	8	A8S	Gct	Tct	1	1	B.1.468	0.005714
ORF10	8	A8V	gCt	gTt	1	1	B.1.478	0.011765
ORF10	8	A8I	GCt	ATt	1	1	B.1.497	0.000315
ORF10	8	A8del	GCT	---	1	1	B.1.499	0.00105
ORF10	8	A8S	Gct	Tct	1	1	B.1.502	0.052632
ORF10	8	A8A	gcT	gcC	1	1	B.1.502	0.052632
ORF10	8	A8V	gCt	gTt	1	1	B.1.503	0.002488
ORF10	8	A8V	gCt	gTt	1	1	B.1.518	0.011765
ORF10	8	A8del	GCT	---	1	1	B.1.525	0.000113
ORF10	8	A8D	gCt	gAt	1	1	B.1.526	0.000024
ORF10	8	A8del2	GCt	--t	1	1	B.1.526	0.000024
ORF10	8	A8T	Gct	Act	1	1	B.1.561	0.000397
ORF10	8	A8del2	GCt	--t	1	1	B.1.564	0.000426
ORF10	8	A8V	gCt	gTt	1	1	B.1.568	0.001111
ORF10	8	A8V	gCt	gTt	1	1	B.1.576	0.000907
ORF10	8	A8V	gCt	gTt	1	1	B.1.595	0.000261
ORF10	8	A8A	gcT	gcC	1	1	B.1.596	0.000087
ORF10	8	A8L	GCT	CTC	1	1	B.1.617.1	0.000129
ORF10	8	A8P	Gct	Cct	1	1	B.1.617.2	0.000004
ORF10	8	A8V	gCt	gTt	1	1	B.1.619	0.000871
ORF10	8	A8V	gCt	gTt	1	1	B.1.619.1	0.000641
ORF10	8	A8S	Gct	Tct	1	1	B.1.620	0.000946
ORF10	8	A8del	GCT	---	1	1	B.1.621	0.000089
ORF10	8	A8S	Gct	Tct	1	1	B.1.623	0.000536
ORF10	8	A8V	gCt	gTt	1	1	B.1.623	0.000536
ORF10	8	A8del	GCT	---	1	1	B.1.623	0.000536
ORF10	8	A8del	GCT	---	1	1	B.1.627	0.00202
ORF10	8	A8P	Gct	Cct	1	1	B.1.627	0.00202
ORF10	8	A8G	gCt	gGt	1	1	B.1.627	0.00202
ORF10	8	A8R	GCt	CGt	1	1	B.1.627	0.00202
ORF10	8	A8del1	gcT	gc-	1	1	B.1.628	0.000352
ORF10	8	A8V	gCt	gTt	1	1	B.1.628	0.000352
ORF10	8	A8D	gCt	gAt	1	1	B.1.628	0.000352
ORF10	8	A8del	GCT	---	1	1	B.1.632	0.006711
ORF10	8	A8V	gCt	gTt	1	1	B.1.634	0.003425
ORF10	8	A8A	gcT	gcG	1	1	B.1.636	0.006711
ORF10	8	A8del2	GCt	--t	1	1	B.1.637	0.000073
ORF10	8	A8A	gcT	gcC	1	1	B.1.70	0.02439
ORF10	8	A8del1	gcT	gc-	1	1	B.29	0.003509
ORF10	8	A8T	Gct	Act	1	1	B.6	0.00091
ORF10	8	A8S	Gct	Tct	1	1	C.36.3	0.000567
ORF10	8	A8del	GCT	---	1	1	C.37	0.000116
ORF10	8	A8T	Gct	Act	1	1	C.37	0.000116
ORF10	8	A8V	gCt	gTt	1	1	C.39	0.018868
ORF10	8	A8del	GCT	---	1	1	N.10	0.029412
ORF10	8	A8P	Gct	Cct	1	1	N.5	0.001767
ORF10	8	A8del2	gCT	g--	1	1	P.1	0.000016
ORF10	8	A8S	Gct	Tct	1	1	P.1.1	0.000318
ORF10	8	A8V	gCt	gTt	1	1	P.1.10	0.000269
ORF10	8	A8V	gCt	gTt	1	1	P.1.12	0.000484
ORF10	8	A8T	Gct	Act	1	1	P.1.14	0.000048
ORF10	8	A8del1	gcT	gc-	1	1	P.1.15	0.000232
ORF10	8	A8del	GCT	---	1	1	P.1.17	0.000162
ORF10	8	A8del1	gcT	gc-	1	1	P.1.6	0.001946
ORF10	8	A8V	gCt	gTt	1	1	P.1.7	0.000319
ORF10	8	A8V	gCt	gTt	1	1	P.1.9	0.004808
ORF10	8	A8V	gCt	gTt	1	1	P.2	0.000187
ORF10	8	A8S	Gct	Tct	1	1	P.2	0.000187
ORF10	8	A8A	gcT	gcG	1	1	P.6	0.003145
ORF10	8	A8V	gCt	gTt	1	1	Q.1	0.000126
ORF10	8	A8V	gCt	gTt	1	1	Q.7	0.001111
ORF10	8	A8del1	gcT	gc-	1	1	Q.8	0.000165
ORF10	8	A8V	gCt	gTt	1	1	Q.8	0.000165
ORF10	8	A8V	gCt	gTt	1	1	R.1	0.00009
ORF10	8	A8del	GCT	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.