CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF10 | 7 | F7del | del | TTC | --- | 1131 | 1131 | 1 | 29576-29578 | |
ORF10 | 7 | F7F | syn | ttC | ttT | 686 | 686 | 1 | 29576-29578 | |
ORF10 | 7 | F7L | nonsyn | ttC | ttA | 389 | 326 | 0.838046 | 29576-29578 | |
ORF10 | 7 | F7L | nonsyn | Ttc | Ctc | 389 | 40 | 0.102828 | 29576-29578 | |
ORF10 | 7 | F7L | nonsyn | ttC | ttG | 389 | 23 | 0.059126 | 29576-29578 | |
ORF10 | 7 | F7S | nonsyn | tTc | tCc | 54 | 53 | 0.981481 | 29576-29578 | |
ORF10 | 7 | F7S | nonsyn | tTC | tCA | 54 | 1 | 0.0185185 | 29576-29578 | |
ORF10 | 7 | F7del2 | del | tTC | t-- | 39 | 20 | 0.512821 | 29576-29578 | |
ORF10 | 7 | F7del2 | del | TTc | --c | 39 | 18 | 0.461538 | 29576-29578 | |
ORF10 | 7 | F7del2 | del | TTC | --N | 39 | 1 | 0.025641 | 29576-29578 | |
ORF10 | 7 | F7C | nonsyn | tTc | tGc | 24 | 24 | 1 | 29576-29578 | |
ORF10 | 7 | F7V | nonsyn | Ttc | Gtc | 23 | 16 | 0.695652 | 29576-29578 | |
ORF10 | 7 | F7V | nonsyn | TtC | GtT | 23 | 6 | 0.26087 | 29576-29578 | |
ORF10 | 7 | F7V | nonsyn | TtC | GtG | 23 | 1 | 0.0434783 | 29576-29578 | |
ORF10 | 7 | F7del1 | del | Ttc | -tc | 21 | 13 | 0.619048 | 29576-29578 | |
ORF10 | 7 | F7del1 | del | ttC | tt- | 21 | 3 | 0.142857 | 29576-29578 | |
ORF10 | 7 | F7del1 | del | TTc | -Ac | 21 | 2 | 0.0952381 | 29576-29578 | |
ORF10 | 7 | F7del1 | del | TTc | -Gc | 21 | 1 | 0.047619 | 29576-29578 | |
ORF10 | 7 | F7del1 | del | tTC | tC- | 21 | 1 | 0.047619 | 29576-29578 | |
ORF10 | 7 | F7del1 | del | TtC | -tT | 21 | 1 | 0.047619 | 29576-29578 | |
ORF10 | 7 | F7Y | nonsyn | tTc | tAc | 17 | 16 | 0.941176 | 29576-29578 | |
ORF10 | 7 | F7Y | nonsyn | tTC | tAT | 17 | 1 | 0.0588235 | 29576-29578 | |
ORF10 | 7 | F7I | nonsyn | Ttc | Atc | 16 | 15 | 0.9375 | 29576-29578 | |
ORF10 | 7 | F7I | nonsyn | TtC | AtA | 16 | 1 | 0.0625 | 29576-29578 | |
ORF10 | 7 | F7R | nonsyn | TTC | AGG | 2 | 2 | 1 | 29576-29578 | |
ORF10 | 7 | F7N | nonsyn | TTc | AAc | 1 | 1 | 1 | 29576-29578 | |
ORF10 | 7 | F7P | nonsyn | TTc | CCc | 1 | 1 | 1 | 29576-29578 | |
ORF10 | 7 | F7D | nonsyn | TTc | GAc | 1 | 1 | 1 | 29576-29578 | |
ORF10 | 7 | F7G | nonsyn | TTc | GGc | 1 | 1 | 1 | 29576-29578 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF10 | 7 | F7del | TTC | --- | 1131 | 1131 | All | 0.000216 |
ORF10 | 7 | F7F | ttC | ttT | 686 | 686 | All | 0.000131 |
ORF10 | 7 | F7del | TTC | --- | 425 | 425 | B.1.627 | 0.858586 |
ORF10 | 7 | F7L | ttC | ttA | 326 | 389 | All | 0.000062 |
ORF10 | 7 | F7L | Ttc | Ctc | 40 | 389 | All | 0.000008 |
ORF10 | 7 | F7L | ttC | ttG | 23 | 389 | All | 0.000004 |
ORF10 | 7 | F7del | TTC | --- | 168 | 168 | AY.4 | 0.000261 |
ORF10 | 7 | F7F | ttC | ttT | 164 | 164 | B.1.1.7 | 0.000147 |
ORF10 | 7 | F7L | ttC | ttA | 145 | 145 | B.1.1.153 | 0.158817 |
ORF10 | 7 | F7del | TTC | --- | 83 | 83 | B.1.1.7 | 0.000074 |
ORF10 | 7 | F7F | ttC | ttT | 75 | 75 | AY.4 | 0.000117 |
ORF10 | 7 | F7del | TTC | --- | 69 | 69 | B.1.617.2 | 0.00026 |
ORF10 | 7 | F7del | TTC | --- | 67 | 67 | AY.26 | 0.001897 |
ORF10 | 7 | F7L | ttC | ttA | 58 | 58 | AY.33 | 0.003873 |
ORF10 | 7 | F7S | tTc | tCc | 53 | 54 | All | 0.00001 |
ORF10 | 7 | F7S | tTC | tCA | 1 | 54 | All | 0 |
ORF10 | 7 | F7F | ttC | ttT | 53 | 53 | AY.25 | 0.000319 |
ORF10 | 7 | F7F | ttC | ttT | 43 | 43 | C.37 | 0.004991 |
ORF10 | 7 | F7del | TTC | --- | 41 | 41 | AY.47 | 0.001275 |
ORF10 | 7 | F7del2 | tTC | t-- | 20 | 39 | All | 0.000004 |
ORF10 | 7 | F7del2 | TTc | --c | 18 | 39 | All | 0.000003 |
ORF10 | 7 | F7del2 | TTC | --N | 1 | 39 | All | 0 |
ORF10 | 7 | F7F | ttC | ttT | 38 | 38 | B.1 | 0.000348 |
ORF10 | 7 | F7L | ttC | ttA | 26 | 38 | B.1.1.7 | 0.000023 |
ORF10 | 7 | F7L | ttC | ttG | 10 | 38 | B.1.1.7 | 0.000009 |
ORF10 | 7 | F7L | Ttc | Ctc | 2 | 38 | B.1.1.7 | 0.000002 |
ORF10 | 7 | F7del | TTC | --- | 33 | 33 | B.1.526 | 0.000776 |
ORF10 | 7 | F7F | ttC | ttT | 31 | 31 | B.1.177 | 0.000408 |
ORF10 | 7 | F7del | TTC | --- | 29 | 29 | AY.25 | 0.000174 |
ORF10 | 7 | F7F | ttC | ttT | 26 | 26 | B.1.1.163 | 0.198473 |
ORF10 | 7 | F7S | tTc | tCc | 26 | 26 | B.1.1.7 | 0.000023 |
ORF10 | 7 | F7C | tTc | tGc | 24 | 24 | All | 0.000005 |
ORF10 | 7 | F7V | Ttc | Gtc | 16 | 23 | All | 0.000003 |
ORF10 | 7 | F7V | TtC | GtT | 6 | 23 | All | 0.000001 |
ORF10 | 7 | F7V | TtC | GtG | 1 | 23 | All | 0 |
ORF10 | 7 | F7del1 | Ttc | -tc | 13 | 21 | All | 0.000002 |
ORF10 | 7 | F7del1 | ttC | tt- | 3 | 21 | All | 0.000001 |
ORF10 | 7 | F7del1 | TTc | -Ac | 2 | 21 | All | 0 |
ORF10 | 7 | F7del1 | TTc | -Gc | 1 | 21 | All | 0 |
ORF10 | 7 | F7del1 | TtC | -tT | 1 | 21 | All | 0 |
ORF10 | 7 | F7del1 | tTC | tC- | 1 | 21 | All | 0 |
ORF10 | 7 | F7L | ttC | ttA | 21 | 21 | B.1.160 | 0.000655 |
ORF10 | 7 | F7F | ttC | ttT | 20 | 20 | AY.26 | 0.000566 |
ORF10 | 7 | F7del | TTC | --- | 20 | 20 | B.1.1.519 | 0.000794 |
ORF10 | 7 | F7F | ttC | ttT | 20 | 20 | B.1.617.2 | 0.000075 |
ORF10 | 7 | F7del | TTC | --- | 19 | 19 | B.1 | 0.000174 |
ORF10 | 7 | F7del2 | tTC | t-- | 19 | 19 | B.1.160.14 | 0.040254 |
ORF10 | 7 | F7Y | tTc | tAc | 16 | 17 | All | 0.000003 |
ORF10 | 7 | F7Y | tTC | tAT | 1 | 17 | All | 0 |
ORF10 | 7 | F7F | ttC | ttT | 17 | 17 | AY.44 | 0.000103 |
ORF10 | 7 | F7I | Ttc | Atc | 15 | 16 | All | 0.000003 |
ORF10 | 7 | F7I | TtC | AtA | 1 | 16 | All | 0 |
ORF10 | 7 | F7F | ttC | ttT | 16 | 16 | B.1.1.317 | 0.006587 |
ORF10 | 7 | F7F | ttC | ttT | 15 | 15 | B.1.111 | 0.017626 |
ORF10 | 7 | F7F | ttC | ttT | 13 | 13 | AY.98 | 0.001027 |
ORF10 | 7 | F7del | TTC | --- | 12 | 12 | B.1.2 | 0.000106 |
ORF10 | 7 | F7L | ttC | ttA | 11 | 12 | B.1.429 | 0.000259 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 12 | B.1.429 | 0.000024 |
ORF10 | 7 | F7del | TTC | --- | 11 | 11 | AY.3 | 0.000109 |
ORF10 | 7 | F7del | TTC | --- | 11 | 11 | AY.44 | 0.000067 |
ORF10 | 7 | F7Y | tTc | tAc | 11 | 11 | B.1.1.7 | 0.00001 |
ORF10 | 7 | F7L | Ttc | Ctc | 5 | 10 | B.1.617.2 | 0.000019 |
ORF10 | 7 | F7L | ttC | ttA | 5 | 10 | B.1.617.2 | 0.000019 |
ORF10 | 7 | F7del | TTC | --- | 9 | 9 | AY.102 | 0.000239 |
ORF10 | 7 | F7F | ttC | ttT | 9 | 9 | AY.43 | 0.00004 |
ORF10 | 7 | F7F | ttC | ttT | 9 | 9 | B.1.2 | 0.000079 |
ORF10 | 7 | F7L | ttC | ttG | 9 | 9 | B.1.525 | 0.001018 |
ORF10 | 7 | F7F | ttC | ttT | 8 | 8 | AY.103 | 0.00005 |
ORF10 | 7 | F7L | ttC | ttA | 8 | 8 | AY.25 | 0.000048 |
ORF10 | 7 | F7I | Ttc | Atc | 8 | 8 | P.1 | 0.000126 |
ORF10 | 7 | F7del | TTC | --- | 7 | 7 | AY.103 | 0.000043 |
ORF10 | 7 | F7del | TTC | --- | 7 | 7 | AY.37 | 0.002212 |
ORF10 | 7 | F7del | TTC | --- | 6 | 6 | AY.118 | 0.000376 |
ORF10 | 7 | F7del | TTC | --- | 6 | 6 | AY.5 | 0.000124 |
ORF10 | 7 | F7L | ttC | ttA | 5 | 6 | B.1 | 0.000046 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 6 | B.1 | 0.000009 |
ORF10 | 7 | F7del | TTC | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF10 | 7 | F7L | ttC | ttA | 5 | 6 | B.1.526 | 0.000118 |
ORF10 | 7 | F7L | ttC | ttG | 1 | 6 | B.1.526 | 0.000024 |
ORF10 | 7 | F7del | TTC | --- | 6 | 6 | B.1.596 | 0.000523 |
ORF10 | 7 | F7V | Ttc | Gtc | 5 | 6 | B.1.617.2 | 0.000019 |
ORF10 | 7 | F7V | TtC | GtT | 1 | 6 | B.1.617.2 | 0.000004 |
ORF10 | 7 | F7F | ttC | ttT | 5 | 5 | AY.3 | 0.00005 |
ORF10 | 7 | F7L | Ttc | Ctc | 4 | 5 | AY.4 | 0.000006 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 5 | AY.4 | 0.000002 |
ORF10 | 7 | F7F | ttC | ttT | 5 | 5 | AY.47 | 0.000156 |
ORF10 | 7 | F7F | ttC | ttT | 5 | 5 | B.1.1 | 0.000091 |
ORF10 | 7 | F7L | ttC | ttA | 5 | 5 | B.1.1 | 0.000091 |
ORF10 | 7 | F7del | TTC | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF10 | 7 | F7F | ttC | ttT | 5 | 5 | B.1.1.41 | 0.031646 |
ORF10 | 7 | F7V | Ttc | Gtc | 3 | 5 | B.1.1.7 | 0.000003 |
ORF10 | 7 | F7V | TtC | GtT | 2 | 5 | B.1.1.7 | 0.000002 |
ORF10 | 7 | F7F | ttC | ttT | 5 | 5 | B.1.621 | 0.000443 |
ORF10 | 7 | F7F | ttC | ttT | 4 | 4 | AY.100 | 0.000184 |
ORF10 | 7 | F7del | TTC | --- | 4 | 4 | AY.39 | 0.000099 |
ORF10 | 7 | F7del1 | Ttc | -tc | 2 | 4 | AY.4 | 0.000003 |
ORF10 | 7 | F7del1 | TTc | -Gc | 1 | 4 | AY.4 | 0.000002 |
ORF10 | 7 | F7del1 | TTc | -Ac | 1 | 4 | AY.4 | 0.000002 |
ORF10 | 7 | F7del | TTC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF10 | 7 | F7del | TTC | --- | 4 | 4 | AY.54 | 0.000381 |
ORF10 | 7 | F7del | TTC | --- | 4 | 4 | AY.9 | 0.00027 |
ORF10 | 7 | F7F | ttC | ttT | 4 | 4 | AY.9.2 | 0.000147 |
ORF10 | 7 | F7F | ttC | ttT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF10 | 7 | F7L | ttC | ttA | 4 | 4 | B.1.1.25 | 0.002274 |
ORF10 | 7 | F7S | tTc | tCc | 4 | 4 | B.1.177.58 | 0.005326 |
ORF10 | 7 | F7F | ttC | ttT | 4 | 4 | B.1.243 | 0.000278 |
ORF10 | 7 | F7F | ttC | ttT | 4 | 4 | B.1.36.8 | 0.004 |
ORF10 | 7 | F7L | Ttc | Ctc | 2 | 3 | AY.100 | 0.000092 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 3 | AY.100 | 0.000046 |
ORF10 | 7 | F7F | ttC | ttT | 3 | 3 | AY.119 | 0.000106 |
ORF10 | 7 | F7L | ttC | ttA | 3 | 3 | AY.23 | 0.000209 |
ORF10 | 7 | F7del2 | TTc | --c | 3 | 3 | AY.25 | 0.000018 |
ORF10 | 7 | F7del1 | Ttc | -tc | 3 | 3 | AY.25 | 0.000018 |
ORF10 | 7 | F7F | ttC | ttT | 3 | 3 | AY.39 | 0.000074 |
ORF10 | 7 | F7I | Ttc | Atc | 3 | 3 | AY.4 | 0.000005 |
ORF10 | 7 | F7F | ttC | ttT | 3 | 3 | AY.42 | 0.000121 |
ORF10 | 7 | F7S | tTc | tCc | 3 | 3 | AY.43 | 0.000013 |
ORF10 | 7 | F7V | Ttc | Gtc | 3 | 3 | AY.45 | 0.000365 |
ORF10 | 7 | F7S | tTc | tCc | 3 | 3 | B.1 | 0.000027 |
ORF10 | 7 | F7del | TTC | --- | 3 | 3 | B.1.1.222 | 0.000612 |
ORF10 | 7 | F7F | ttC | ttT | 3 | 3 | B.1.160 | 0.000094 |
ORF10 | 7 | F7del | TTC | --- | 3 | 3 | B.1.160 | 0.000094 |
ORF10 | 7 | F7L | Ttc | Ctc | 3 | 3 | B.1.160.26 | 0.007264 |
ORF10 | 7 | F7del1 | Ttc | -tc | 2 | 3 | B.1.258 | 0.000133 |
ORF10 | 7 | F7del1 | TTc | -Ac | 1 | 3 | B.1.258 | 0.000067 |
ORF10 | 7 | F7del | TTC | --- | 3 | 3 | B.1.258.11 | 0.001189 |
ORF10 | 7 | F7L | ttC | ttA | 2 | 3 | B.1.311 | 0.000549 |
ORF10 | 7 | F7L | ttC | ttG | 1 | 3 | B.1.311 | 0.000275 |
ORF10 | 7 | F7F | ttC | ttT | 3 | 3 | B.1.565 | 0.002431 |
ORF10 | 7 | F7F | ttC | ttT | 3 | 3 | B.1.596 | 0.000261 |
ORF10 | 7 | F7F | ttC | ttT | 3 | 3 | C.1.2 | 0.012766 |
ORF10 | 7 | F7del | TTC | --- | 3 | 3 | P.1 | 0.000047 |
ORF10 | 7 | F7L | ttC | ttA | 2 | 2 | A.2.5 | 0.000998 |
ORF10 | 7 | F7R | TTC | AGG | 2 | 2 | All | 0 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 2 | AY.102 | 0.000027 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 2 | AY.102 | 0.000027 |
ORF10 | 7 | F7S | tTc | tCc | 2 | 2 | AY.103 | 0.000012 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | AY.116.1 | 0.000623 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | AY.20 | 0.000078 |
ORF10 | 7 | F7L | Ttc | Ctc | 2 | 2 | AY.27 | 0.000129 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 2 | AY.39 | 0.000025 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 2 | AY.39 | 0.000025 |
ORF10 | 7 | F7del2 | TTc | --c | 2 | 2 | AY.4 | 0.000003 |
ORF10 | 7 | F7L | ttC | ttA | 2 | 2 | AY.4.5 | 0.000215 |
ORF10 | 7 | F7V | TtC | GtT | 1 | 2 | AY.43 | 0.000004 |
ORF10 | 7 | F7V | TtC | GtG | 1 | 2 | AY.43 | 0.000004 |
ORF10 | 7 | F7V | Ttc | Gtc | 2 | 2 | AY.5.3 | 0.000675 |
ORF10 | 7 | F7L | Ttc | Ctc | 2 | 2 | AY.53 | 0.000575 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | AY.60 | 0.001876 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | AY.75 | 0.000112 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | AY.75 | 0.000112 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | AY.87 | 0.001665 |
ORF10 | 7 | F7L | ttC | ttA | 2 | 2 | AY.9.2 | 0.000073 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | B | 0.000256 |
ORF10 | 7 | F7C | tTc | tGc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF10 | 7 | F7L | Ttc | Ctc | 2 | 2 | B.1.1.517 | 0.013605 |
ORF10 | 7 | F7S | tTc | tCc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF10 | 7 | F7del2 | TTc | --c | 2 | 2 | B.1.1.7 | 0.000002 |
ORF10 | 7 | F7C | tTc | tGc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | B.1.128 | 0.001271 |
ORF10 | 7 | F7C | tTc | tGc | 2 | 2 | B.1.184 | 0.117647 |
ORF10 | 7 | F7C | tTc | tGc | 2 | 2 | B.1.2 | 0.000018 |
ORF10 | 7 | F7C | tTc | tGc | 2 | 2 | B.1.243 | 0.000139 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | B.1.375 | 0.001639 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | B.1.429 | 0.000047 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | B.1.575 | 0.000607 |
ORF10 | 7 | F7C | tTc | tGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | B.1.628 | 0.000705 |
ORF10 | 7 | F7del | TTC | --- | 2 | 2 | N.10 | 0.058824 |
ORF10 | 7 | F7F | ttC | ttT | 2 | 2 | P.1 | 0.000032 |
ORF10 | 7 | F7S | tTc | tCc | 2 | 2 | P.1 | 0.000032 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | A.2 | 0.000662 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AD.1 | 0.004115 |
ORF10 | 7 | F7D | TTc | GAc | 1 | 1 | All | 0 |
ORF10 | 7 | F7P | TTc | CCc | 1 | 1 | All | 0 |
ORF10 | 7 | F7N | TTc | AAc | 1 | 1 | All | 0 |
ORF10 | 7 | F7G | TTc | GGc | 1 | 1 | All | 0 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.103 | 0.000006 |
ORF10 | 7 | F7I | Ttc | Atc | 1 | 1 | AY.103 | 0.000006 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.107 | 0.000466 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.111 | 0.000183 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | AY.117 | 0.000085 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.117 | 0.000085 |
ORF10 | 7 | F7del1 | TtC | -tT | 1 | 1 | AY.120 | 0.000037 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.120.1 | 0.000321 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.13 | 0.000161 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | AY.14 | 0.000088 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.16.1 | 0.00047 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | AY.20 | 0.000039 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.20 | 0.000039 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.23 | 0.00007 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | AY.23.1 | 0.000417 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.23.1 | 0.000417 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.24 | 0.000431 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | AY.25 | 0.000006 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | AY.25 | 0.000006 |
ORF10 | 7 | F7V | TtC | GtT | 1 | 1 | AY.25 | 0.000006 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.26 | 0.000028 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | AY.26 | 0.000028 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.27 | 0.000065 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.29 | 0.000016 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.29 | 0.000016 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | AY.3 | 0.00001 |
ORF10 | 7 | F7del1 | ttC | tt- | 1 | 1 | AY.3 | 0.00001 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.3 | 0.00001 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.3.1 | 0.000085 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.30 | 0.000396 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.34 | 0.000097 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.34 | 0.000097 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.35 | 0.000233 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF10 | 7 | F7V | Ttc | Gtc | 1 | 1 | AY.39 | 0.000025 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | AY.4 | 0.000002 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | AY.4.2 | 0.000022 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.4.2 | 0.000022 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.4.4 | 0.000409 |
ORF10 | 7 | F7G | TTc | GGc | 1 | 1 | AY.40 | 0.000964 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.42 | 0.00004 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 7 | F7N | TTc | AAc | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 7 | F7del1 | Ttc | -tc | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | AY.44 | 0.000006 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | AY.44 | 0.000006 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | AY.44 | 0.000006 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.45 | 0.000122 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.45 | 0.000122 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF10 | 7 | F7del2 | TTC | --N | 1 | 1 | AY.47 | 0.000031 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.5 | 0.000021 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.51 | 0.000909 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.57 | 0.000656 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.62 | 0.000436 |
ORF10 | 7 | F7Y | tTc | tAc | 1 | 1 | AY.62 | 0.000436 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | AY.72 | 0.001361 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | AY.75 | 0.000056 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | AY.75.1 | 0.00018 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | AY.86 | 0.00083 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | AY.9.2 | 0.000037 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | AY.92 | 0.000287 |
ORF10 | 7 | F7Y | tTc | tAc | 1 | 1 | AY.98 | 0.000079 |
ORF10 | 7 | F7del1 | Ttc | -tc | 1 | 1 | AY.98 | 0.000079 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | AY.98.1 | 0.000048 |
ORF10 | 7 | F7P | TTc | CCc | 1 | 1 | AY.98.1 | 0.000048 |
ORF10 | 7 | F7del1 | Ttc | -tc | 1 | 1 | AY.99 | 0.001049 |
ORF10 | 7 | F7R | TTC | AGG | 1 | 1 | AY.99 | 0.001049 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B | 0.000128 |
ORF10 | 7 | F7V | Ttc | Gtc | 1 | 1 | B.1 | 0.000009 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | B.1 | 0.000009 |
ORF10 | 7 | F7del1 | Ttc | -tc | 1 | 1 | B.1 | 0.000009 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF10 | 7 | F7I | Ttc | Atc | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF10 | 7 | F7Y | tTc | tAc | 1 | 1 | B.1.1.27 | 0.00565 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.1.47 | 0.005348 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF10 | 7 | F7del1 | Ttc | -tc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF10 | 7 | F7D | TTc | GAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF10 | 7 | F7I | Ttc | Atc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.128 | 0.000635 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.157 | 0.002985 |
ORF10 | 7 | F7del2 | tTC | t-- | 1 | 1 | B.1.160 | 0.000031 |
ORF10 | 7 | F7del1 | Ttc | -tc | 1 | 1 | B.1.160 | 0.000031 |
ORF10 | 7 | F7del1 | ttC | tt- | 1 | 1 | B.1.160.14 | 0.002119 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B.1.177 | 0.000013 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | B.1.177.35 | 0.000691 |
ORF10 | 7 | F7S | tTC | tCA | 1 | 1 | B.1.177.63 | 0.002703 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 7 | F7Y | tTc | tAc | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 7 | F7del1 | ttC | tt- | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.236 | 0.002053 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | B.1.243 | 0.00007 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | B.1.258 | 0.000067 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | B.1.258 | 0.000067 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.258 | 0.000067 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF10 | 7 | F7V | Ttc | Gtc | 1 | 1 | B.1.311 | 0.000275 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.351 | 0.00003 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.354 | 0.043478 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B.1.356 | 0.001727 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF10 | 7 | F7del1 | tTC | tC- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF10 | 7 | F7Y | tTc | tAc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B.1.36.38 | 0.001642 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.362 | 0.001541 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B.1.367 | 0.000792 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.367 | 0.000792 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | B.1.396 | 0.000706 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.397 | 0.004854 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.399 | 0.001934 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B.1.427 | 0.00005 |
ORF10 | 7 | F7I | Ttc | Atc | 1 | 1 | B.1.429 | 0.000024 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | B.1.429 | 0.000024 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF10 | 7 | F7I | TtC | AtA | 1 | 1 | B.1.497 | 0.000315 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | B.1.508 | 0.025641 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.509 | 0.000866 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | B.1.525 | 0.000113 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | B.1.525 | 0.000113 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | B.1.526 | 0.000024 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | B.1.526 | 0.000024 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.526 | 0.000024 |
ORF10 | 7 | F7V | TtC | GtT | 1 | 1 | B.1.561 | 0.000397 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.1.609 | 0.000479 |
ORF10 | 7 | F7R | TTC | AGG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 7 | F7C | tTc | tGc | 1 | 1 | B.1.621 | 0.000089 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.623 | 0.000536 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.632 | 0.006711 |
ORF10 | 7 | F7L | ttC | ttG | 1 | 1 | B.1.636 | 0.006711 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | B.6 | 0.00091 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | C.37 | 0.000116 |
ORF10 | 7 | F7S | tTc | tCc | 1 | 1 | C.37 | 0.000116 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | C.37 | 0.000116 |
ORF10 | 7 | F7L | ttC | ttG | 1 | 1 | P.1 | 0.000016 |
ORF10 | 7 | F7Y | tTC | tAT | 1 | 1 | P.1 | 0.000016 |
ORF10 | 7 | F7L | Ttc | Ctc | 1 | 1 | P.1.15 | 0.000232 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | P.1.15 | 0.000232 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | P.1.17 | 0.000162 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | P.1.2 | 0.001156 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | P.2 | 0.000187 |
ORF10 | 7 | F7del2 | TTc | --c | 1 | 1 | Q.2 | 0.000613 |
ORF10 | 7 | F7L | ttC | ttA | 1 | 1 | Q.4 | 0.000455 |
ORF10 | 7 | F7F | ttC | ttT | 1 | 1 | Q.8 | 0.000165 |
ORF10 | 7 | F7del | TTC | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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