CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 4

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF104I4VnonsynAtaGta510751010.99882529567-29569
ORF104I4VnonsynAtAGtG510760.0011748629567-29569
ORF104I4TnonsynaTaaCa7667650.99869529567-29569
ORF104I4TnonsynaTAaCG76610.0013054829567-29569
ORF104I4LnonsynAtaCta3673560.97002729567-29569
ORF104I4LnonsynAtaTta36790.024523229567-29569
ORF104I4LnonsynAtATtG36720.0054495929567-29569
ORF104I4deldelATA---9191129567-29569
ORF104I4MnonsynatAatG3636129567-29569
ORF104I4IsynatAatT11100.90909129567-29569
ORF104I4IsynatAatC1110.090909129567-29569
ORF104I4KnonsynaTaaAa66129567-29569
ORF104I4del1delatAat-540.829567-29569
ORF104I4del1delAta-ta510.229567-29569
ORF104I4EnonsynATaGAa22129567-29569
ORF104I4del2delaTAa--210.529567-29569
ORF104I4del2delATa--a210.529567-29569
ORF104I4QnonsynATaCAa11129567-29569
ORF104I4SnonsynATATCC11129567-29569
ORF104I4NnonsynaTAaAT11129567-29569
ORF104I4XnonsynATaTAa11129567-29569
ORF104I4GnonsynATaGGa11129567-29569

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF104I4VAtaGta51015107All0.000976
ORF104I4VAtAGtG65107All0.000001
ORF104I4VAtaGta13491349B.1.3960.952011
ORF104I4TaTaaCa765766All0.000146
ORF104I4TaTAaCG1766All0
ORF104I4VAtaGta604604B.1.617.20.002274
ORF104I4VAtaGta431431AY.1020.011428
ORF104I4LAtaCta356367All0.000068
ORF104I4LAtaTta9367All0.000002
ORF104I4LAtATtG2367All0
ORF104I4VAtaGta356356B.1.1.70.000319
ORF104I4VAtaGta345345B.10.00316
ORF104I4VAtaGta210210AY.680.057487
ORF104I4TaTaaCa203203B.1.617.20.000764
ORF104I4TaTaaCa201202AY.430.000891
ORF104I4TaTAaCG1202AY.430.000004
ORF104I4LAtaCta142142A0.054954
ORF104I4VAtaGta140140AY.240.060345
ORF104I4VAtaGta138138AY.700.028774
ORF104I4VAtaGta134134B.1.20.00118
ORF104I4VAtaGta111117B.1.10.002014
ORF104I4VAtAGtG6117B.1.10.000109
ORF104I4VAtaGta9797AY.440.00059
ORF104I4delATA---9191All0.000017
ORF104I4VAtaGta9191AY.250.000547
ORF104I4TaTaaCa7878AY.40.000121
ORF104I4VAtaGta7676AY.230.005301
ORF104I4LAtaCta7474AY.390.001829
ORF104I4LAtaCta6263B.1.1.70.000056
ORF104I4LAtATtG163B.1.1.70.000001
ORF104I4VAtaGta5353AY.5.30.017881
ORF104I4VAtaGta4646AY.40.000072
ORF104I4VAtaGta4646B.1.5820.022571
ORF104I4VAtaGta4444AY.430.000195
ORF104I4VAtaGta4141B.1.5960.003573
ORF104I4TaTaaCa3737B.1.1.70.000033
ORF104I4VAtaGta3737B.1.5750.011226
ORF104I4MatAatG3636All0.000007
ORF104I4VAtaGta3131B.1.2340.00409
ORF104I4VAtaGta3131B.1.258.170.003223
ORF104I4VAtaGta2828P.10.000441
ORF104I4VAtaGta2727AY.390.000667
ORF104I4VAtaGta2424AY.1170.002028
ORF104I4TaTaaCa2323AY.440.00014
ORF104I4VAtaGta2020AY.1030.000124
ORF104I4TaTaaCa2020B.1.1.2140.001109
ORF104I4TaTaaCa2020B.1.4290.000471
ORF104I4TaTaaCa1919B.1.1.100.021182
ORF104I4VAtaGta1818AY.30.000179
ORF104I4VAtaGta1818AY.50.000372
ORF104I4VAtaGta1818AY.9.20.000661
ORF104I4TaTaaCa1717AY.650.009062
ORF104I4VAtaGta1616B.1.4290.000376
ORF104I4VAtaGta1515AY.460.001561
ORF104I4VAtaGta1414AY.200.000544
ORF104I4TaTaaCa1414B.1.10.000254
ORF104I4VAtaGta1414B.1.1770.000184
ORF104I4VAtaGta1313B.1.1.2160.011576
ORF104I4MatAatG1313B.1.2580.000865
ORF104I4VAtaGta1212AY.1000.000552
ORF104I4VAtaGta1212B.1.780.102564
ORF104I4IatAatT1011All0.000002
ORF104I4IatAatC111All0
ORF104I4VAtaGta1111AY.520.008958
ORF104I4LAtaCta811B.1.617.20.00003
ORF104I4LAtaTta311B.1.617.20.000011
ORF104I4TaTaaCa1010AY.1030.000062
ORF104I4delATA---1010AY.40.000016
ORF104I4VAtaGta1010AY.980.00079
ORF104I4TaTaaCa1010B.10.000092
ORF104I4VAtaGta1010B.1.2400.002156
ORF104I4delATA---99AY.250.000054
ORF104I4VAtaGta99AY.330.000601
ORF104I4LAtaCta99AY.330.000601
ORF104I4VAtaGta99AY.470.00028
ORF104I4VAtaGta99AY.5.40.00249
ORF104I4VAtaGta99B.1.1.2690.012179
ORF104I4VAtaGta99B.1.1.390.004587
ORF104I4VAtaGta99B.1.5950.002349
ORF104I4VAtaGta99B.1.6000.052632
ORF104I4TaTaaCa99P.10.000142
ORF104I4LAtaCta88B.1.20.00007
ORF104I4VAtaGta77AY.1180.000439
ORF104I4VAtaGta77AY.1190.000247
ORF104I4VAtaGta77AY.270.000453
ORF104I4VAtaGta77AY.340.000679
ORF104I4VAtaGta77AY.34.10.00357
ORF104I4LAtaCta77AY.40.000011
ORF104I4delATA---77B.10.000064
ORF104I4delATA---77B.1.1.70.000006
ORF104I4VAtaGta77B.1.2100.014925
ORF104I4VAtaGta77B.1.2430.000487
ORF104I4VAtaGta77B.1.5260.000165
ORF104I4VAtaGta77P.1.100.001886
ORF104I4KaTaaAa66All0.000001
ORF104I4TaTaaCa66AY.290.000095
ORF104I4MatAatG66AY.39.10.000238
ORF104I4VAtaGta66AY.910.004383
ORF104I4VAtaGta66AZ.20.004926
ORF104I4VAtaGta66B.1.1.370.001157
ORF104I4VAtaGta66B.1.1.5190.000238
ORF104I4delATA---66B.1.2580.000399
ORF104I4VAtaGta66B.1.438.10.000644
ORF104I4TaTaaCa66B.1.438.10.000644
ORF104I4delATA---66B.1.617.20.000023
ORF104I4del1atAat-45All0.000001
ORF104I4del1Ata-ta15All0
ORF104I4TaTaaCa55AY.1000.00023
ORF104I4TaTaaCa55AY.1020.000133
ORF104I4VAtaGta55AY.130.000805
ORF104I4TaTaaCa55AY.160.001898
ORF104I4VAtaGta55AY.260.000142
ORF104I4MatAatG55AY.40.000008
ORF104I4TaTaaCa55AY.620.002179
ORF104I4VAtaGta55AY.770.005637
ORF104I4VAtaGta55B.1.1.1940.024752
ORF104I4VAtaGta55B.1.1.500.003394
ORF104I4VAtaGta55B.1.3510.000149
ORF104I4VAtaGta55P.1.150.001162
ORF104I4VAtaGta44AY.1200.000149
ORF104I4VAtaGta44AY.290.000063
ORF104I4LAtaCta44AY.30.00004
ORF104I4TaTaaCa44AY.340.000388
ORF104I4LAtaCta44AY.39.10.000158
ORF104I4delATA---44AY.430.000018
ORF104I4TaTaaCa44AY.450.000487
ORF104I4VAtaGta44AY.450.000487
ORF104I4VAtaGta44AY.7.10.000451
ORF104I4VAtaGta44AY.90.00027
ORF104I4LAtaTta34B.1.1.2220.000612
ORF104I4LAtaCta14B.1.1.2220.000204
ORF104I4VAtaGta44B.1.1.3060.001754
ORF104I4VAtaGta44B.1.1.410.025316
ORF104I4VAtaGta44B.1.160.80.005155
ORF104I4VAtaGta44B.1.2580.000266
ORF104I4VAtaGta44B.1.5200.086957
ORF104I4VAtaGta44B.1.6110.16
ORF104I4VAtaGta44B.1.617.10.000516
ORF104I4VAtaGta33AY.10.001187
ORF104I4TaTaaCa33AY.1170.000254
ORF104I4TaTaaCa33AY.190.003421
ORF104I4TaTaaCa33AY.200.000117
ORF104I4VAtaGta33AY.3.10.000256
ORF104I4TaTaaCa33AY.390.000074
ORF104I4VAtaGta33AY.4.20.000065
ORF104I4LAtaCta33AY.430.000013
ORF104I4LAtaCta33AY.440.000018
ORF104I4TaTaaCa33AY.460.000312
ORF104I4VAtaGta33AY.46.20.001906
ORF104I4TaTaaCa33AY.470.000093
ORF104I4VAtaGta33AY.750.000168
ORF104I4VAtaGta33B.1.1.3180.000905
ORF104I4VAtaGta33B.1.1.4170.008108
ORF104I4IatAatT33B.1.1.70.000003
ORF104I4VAtaGta33B.1.1600.000094
ORF104I4VAtaGta33B.1.2350.007557
ORF104I4VAtaGta33B.1.3110.000824
ORF104I4VAtaGta33B.1.36.290.001552
ORF104I4VAtaGta33B.1.36.360.001806
ORF104I4TaTaaCa33B.1.4260.003027
ORF104I4VAtaGta33B.1.5090.002597
ORF104I4VAtaGta33B.1.5640.001278
ORF104I4VAtaGta33B.1.6120.007958
ORF104I4delATA---33P.10.000047
ORF104I4TaTaaCa22A.280.005291
ORF104I4EATaGAa22All0
ORF104I4del2ATa--a12All0
ORF104I4del2aTAa--12All0
ORF104I4VAtaGta22AY.1140.000462
ORF104I4TaTaaCa22AY.1160.000574
ORF104I4LAtaCta22AY.1210.000271
ORF104I4VAtaGta22AY.140.000176
ORF104I4LAtaCta22AY.200.000078
ORF104I4LAtaCta12AY.250.000006
ORF104I4LAtaTta12AY.250.000006
ORF104I4delATA---22AY.30.00002
ORF104I4TaTaaCa22AY.3.10.000171
ORF104I4MatAatG22AY.4.20.000043
ORF104I4LAtaTta12AY.4.20.000022
ORF104I4LAtaCta12AY.4.20.000022
ORF104I4VAtaGta22AY.400.001929
ORF104I4delATA---22AY.440.000012
ORF104I4LAtaCta22AY.46.50.000397
ORF104I4LAtaCta22AY.50.000041
ORF104I4LAtaCta22AY.610.00021
ORF104I4TaTaaCa22AY.610.00021
ORF104I4LAtaCta22AY.690.000373
ORF104I4VAtaGta22AY.790.002421
ORF104I4VAtaGta22AY.9.10.000167
ORF104I4TaTaaCa22AY.9.20.000073
ORF104I4delATA---22AY.980.000158
ORF104I4VAtaGta22AY.98.10.000097
ORF104I4IatAatT22B.10.000018
ORF104I4delATA---22B.1.10.000036
ORF104I4VAtaGta22B.1.1.2840.000215
ORF104I4VAtaGta22B.1.1.3170.000823
ORF104I4VAtaGta22B.1.1.4130.013793
ORF104I4LAtaCta22B.1.1.4160.00181
ORF104I4VAtaGta22B.1.1.4160.00181
ORF104I4MatAatG22B.1.1.70.000002
ORF104I4VAtaGta22B.1.1110.00235
ORF104I4VAtaGta22B.1.1260.002551
ORF104I4VAtaGta22B.1.1470.001512
ORF104I4delATA---22B.1.1600.000062
ORF104I4delATA---22B.1.20.000018
ORF104I4VAtaGta22B.1.2060.001631
ORF104I4VAtaGta22B.1.258.140.001961
ORF104I4VAtaGta22B.1.3690.00057
ORF104I4VAtaGta22B.1.3750.001639
ORF104I4VAtaGta22B.1.4430.009346
ORF104I4delATA---22B.1.5250.000226
ORF104I4TaTaaCa22B.1.5260.000047
ORF104I4VAtaGta22B.1.5800.00813
ORF104I4VAtaGta22B.1.5890.015152
ORF104I4TaTaaCa22B.1.5950.000522
ORF104I4LAtaCta22B.1.596.10.018692
ORF104I4KaTaaAa22B.1.617.20.000008
ORF104I4IatAatT22B.1.6210.000177
ORF104I4VAtaGta22D.20.00015
ORF104I4TaTaaCa22P.1.140.000096
ORF104I4VAtaGta11A0.000387
ORF104I4LAtaCta11A.20.000662
ORF104I4TaTaaCa11A.210.00277
ORF104I4XATaTAa11All0
ORF104I4QATaCAa11All0
ORF104I4SATATCC11All0
ORF104I4GATaGGa11All0
ORF104I4NaTAaAT11All0
ORF104I4delATA---11AY.1030.000006
ORF104I4VAtaGta11AY.1060.000335
ORF104I4LAtaCta11AY.1070.000466
ORF104I4VAtaGta11AY.1080.001103
ORF104I4TaTaaCa11AY.1100.000113
ORF104I4VAtaGta11AY.1100.000113
ORF104I4TaTaaCa11AY.1130.000142
ORF104I4VAtaGta11AY.1160.000287
ORF104I4delATA---11AY.1170.000085
ORF104I4MatAatG11AY.1180.000063
ORF104I4TaTaaCa11AY.1190.000035
ORF104I4TaTaaCa11AY.120.000316
ORF104I4LAtaCta11AY.1200.000037
ORF104I4LAtaCta11AY.130.000161
ORF104I4VAtaGta11AY.150.002222
ORF104I4VAtaGta11AY.170.008197
ORF104I4VAtaGta11AY.190.00114
ORF104I4VAtaGta11AY.23.10.000417
ORF104I4TaTaaCa11AY.250.000006
ORF104I4MatAatG11AY.250.000006
ORF104I4delATA---11AY.260.000028
ORF104I4TaTaaCa11AY.260.000028
ORF104I4TaTaaCa11AY.270.000065
ORF104I4delATA---11AY.290.000016
ORF104I4MatAatG11AY.330.000067
ORF104I4TaTaaCa11AY.360.000148
ORF104I4VAtaGta11AY.360.000148
ORF104I4delATA---11AY.380.000499
ORF104I4delATA---11AY.39.10.00004
ORF104I4KaTaaAa11AY.40.000002
ORF104I4IatAatT11AY.40.000002
ORF104I4del2ATa--a11AY.40.000002
ORF104I4delATA---11AY.4.20.000022
ORF104I4TaTaaCa11AY.4.20.000022
ORF104I4VAtaGta11AY.4.2.10.000149
ORF104I4LAtATtG11AY.400.000964
ORF104I4VAtaGta11AY.420.00004
ORF104I4EATaGAa11AY.430.000004
ORF104I4KaTaaAa11AY.430.000004
ORF104I4VAtaGta11AY.46.40.000165
ORF104I4delATA---11AY.46.60.000072
ORF104I4LAtaCta11AY.470.000031
ORF104I4del1Ata-ta11AY.470.000031
ORF104I4delATA---11AY.470.000031
ORF104I4delATA---11AY.50.000021
ORF104I4XATaTAa11AY.5.30.000337
ORF104I4MatAatG11AY.510.000909
ORF104I4VAtaGta11AY.540.000095
ORF104I4TaTaaCa11AY.590.00053
ORF104I4VAtaGta11AY.60.000041
ORF104I4EATaGAa11AY.610.000105
ORF104I4delATA---11AY.620.000436
ORF104I4delATA---11AY.650.000533
ORF104I4VAtaGta11AY.690.000187
ORF104I4VAtaGta11AY.710.000475
ORF104I4VAtaGta11AY.840.000437
ORF104I4delATA---11AY.9.10.000084
ORF104I4KaTaaAa11AY.9.20.000037
ORF104I4VAtaGta11AY.960.002075
ORF104I4delATA---11AY.98.10.000048
ORF104I4TaTaaCa11AY.98.10.000048
ORF104I4LAtaTta11AY.990.001049
ORF104I4delATA---11AY.990.001049
ORF104I4VAtaGta11B0.000128
ORF104I4LAtaCta11B.10.000009
ORF104I4del2aTAa--11B.10.000009
ORF104I4LAtaCta11B.1.10.000018
ORF104I4VAtaGta11B.1.1.1180.010204
ORF104I4VAtaGta11B.1.1.1370.0125
ORF104I4VAtaGta11B.1.1.1420.017544
ORF104I4VAtaGta11B.1.1.1450.037037
ORF104I4del1atAat-11B.1.1.1540.04
ORF104I4VAtaGta11B.1.1.1630.007634
ORF104I4VAtaGta11B.1.1.2010.02439
ORF104I4VAtaGta11B.1.1.2140.000055
ORF104I4VAtaGta11B.1.1.2220.000204
ORF104I4VAtaGta11B.1.1.250.000569
ORF104I4VAtaGta11B.1.1.270.00565
ORF104I4VAtaGta11B.1.1.280.000311
ORF104I4MatAatG11B.1.1.2840.000107
ORF104I4VAtaGta11B.1.1.2880.001916
ORF104I4VAtaGta11B.1.1.3040.002809
ORF104I4NaTAaAT11B.1.1.3060.000438
ORF104I4TaTaaCa11B.1.1.3110.000358
ORF104I4VAtaGta11B.1.1.3350.012987
ORF104I4VAtaGta11B.1.1.3480.000796
ORF104I4VAtaGta11B.1.1.3510.002793
ORF104I4VAtaGta11B.1.1.3630.005988
ORF104I4VAtaGta11B.1.1.3890.006061
ORF104I4VAtaGta11B.1.1.4090.002833
ORF104I4delATA---11B.1.1.4200.001006
ORF104I4VAtaGta11B.1.1.4340.000349
ORF104I4VAtaGta11B.1.1.4620.008621
ORF104I4VAtaGta11B.1.1.4660.008696
ORF104I4TaTaaCa11B.1.1.500.000679
ORF104I4VAtaGta11B.1.1.630.000386
ORF104I4QATaCAa11B.1.1.70.000001
ORF104I4del1atAat-11B.1.1.70.000001
ORF104I4VAtaGta11B.1.1030.019231
ORF104I4VAtaGta11B.1.1190.010526
ORF104I4VAtaGta11B.1.1310.008772
ORF104I4VAtaGta11B.1.1390.000733
ORF104I4VAtaGta11B.1.160.70.002079
ORF104I4LAtaCta11B.1.1770.000013
ORF104I4delATA---11B.1.1770.000013
ORF104I4GATaGGa11B.1.177.630.002703
ORF104I4VAtaGta11B.1.177.650.000665
ORF104I4delATA---11B.1.177.830.001481
ORF104I4VAtaGta11B.1.1790.003759
ORF104I4TaTaaCa11B.1.20.000009
ORF104I4VAtaGta11B.1.2210.000071
ORF104I4TaTaaCa11B.1.2210.000071
ORF104I4VAtaGta11B.1.2410.000812
ORF104I4TaTaaCa11B.1.2430.00007
ORF104I4VAtaGta11B.1.243.10.022222
ORF104I4TaTaaCa11B.1.2580.000067
ORF104I4delATA---11B.1.258.160.001637
ORF104I4VAtaGta11B.1.2840.013158
ORF104I4VAtaGta11B.1.3060.005714
ORF104I4VAtaGta11B.1.3240.001605
ORF104I4VAtaGta11B.1.3290.000608
ORF104I4VAtaGta11B.1.3490.000715
ORF104I4del1atAat-11B.1.3510.00003
ORF104I4VAtaGta11B.1.3550.011111
ORF104I4VAtaGta11B.1.3800.006623
ORF104I4VAtaGta11B.1.3900.010638
ORF104I4delATA---11B.1.3960.000706
ORF104I4TaTaaCa11B.1.4040.001302
ORF104I4delATA---11B.1.4270.00005
ORF104I4TaTaaCa11B.1.4270.00005
ORF104I4IatAatT11B.1.4290.000024
ORF104I4LAtaCta11B.1.4360.001029
ORF104I4delATA---11B.1.438.10.000107
ORF104I4VAtaGta11B.1.4480.002625
ORF104I4VAtaGta11B.1.4530.003236
ORF104I4VAtaGta11B.1.466.20.000391
ORF104I4IatAatC11B.1.466.20.000391
ORF104I4VAtaGta11B.1.4730.019231
ORF104I4VAtaGta11B.1.4800.002488
ORF104I4VAtaGta11B.1.4850.014925
ORF104I4MatAatG11B.1.4970.000315
ORF104I4VAtaGta11B.1.5030.002488
ORF104I4VAtaGta11B.1.5170.000427
ORF104I4TaTaaCa11B.1.5240.001406
ORF104I4VAtaGta11B.1.5460.003704
ORF104I4TaTaaCa11B.1.5650.00081
ORF104I4VAtaGta11B.1.5660.019231
ORF104I4TaTaaCa11B.1.5730.006098
ORF104I4TaTaaCa11B.1.5820.000491
ORF104I4KaTaaAa11B.1.5960.000087
ORF104I4delATA---11B.1.5960.000087
ORF104I4VAtaGta11B.1.6090.000479
ORF104I4IatAatT11B.1.617.20.000004
ORF104I4del1atAat-11B.1.6210.000089
ORF104I4SATATCC11B.1.6210.000089
ORF104I4VAtaGta11B.1.6210.000089
ORF104I4VAtaGta11B.1.6230.000536
ORF104I4TaTaaCa11B.1.6370.000073
ORF104I4VAtaGta11B.230.002924
ORF104I4VAtaGta11C.10.002392
ORF104I4VAtaGta11C.350.000774
ORF104I4TaTaaCa11C.36.30.000567
ORF104I4MatAatG11C.370.000116
ORF104I4delATA---11C.370.000116
ORF104I4TaTaaCa11N.40.004255
ORF104I4LAtaCta11P.10.000016
ORF104I4LAtaCta11P.1.120.000484
ORF104I4VAtaGta11P.1.140.000048
ORF104I4VAtaGta11P.1.170.000162
ORF104I4MatAatG11P.1.70.000319
ORF104I4VAtaGta11P.20.000187
ORF104I4VAtaGta11P.50.013699
ORF104I4VAtaGta11P.70.004367
ORF104I4VAtaGta11Q.10.000126
ORF104I4delATA---11Q.20.000613
ORF104I4LAtaCta11Q.30.000145
ORF104I4LAtaCta11Q.80.000165
ORF104I4VAtaGta11Q.80.000165