CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 29 & Codon = Taa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1029Q29XnonsynCaaTaa10230102280.99980429642-29644

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1029Q29XCaaTaa1022810230All0.001956
ORF1029Q29XCaaTaa34223422B.1.1.70.003063
ORF1029Q29XCaaTaa12521252AY.40.001949
ORF1029Q29XCaaTaa377377B.1.617.20.00142
ORF1029Q29XCaaTaa237237P.1.140.011329
ORF1029Q29XCaaTaa215215B.1.1.2840.023091
ORF1029Q29XCaaTaa181181AY.420.007282
ORF1029Q29XCaaTaa172172AY.440.001047
ORF1029Q29XCaaTaa159159AY.250.000956
ORF1029Q29XCaaTaa158158AY.1030.000981
ORF1029Q29XCaaTaa158158B.1.4280.161224
ORF1029Q29XCaaTaa152152AY.430.000673
ORF1029Q29XCaaTaa152152B.1.4290.003576
ORF1029Q29XCaaTaa151151B.1.2430.010507
ORF1029Q29XCaaTaa150150C.2.11
ORF1029Q29XCaaTaa142142P.10.002237
ORF1029Q29XCaaTaa137137AY.1180.008583
ORF1029Q29XCaaTaa136136AY.290.002145
ORF1029Q29XCaaTaa131131B.10.0012
ORF1029Q29XCaaTaa127128B.1.20.001118
ORF1029Q29XCaaTaa100100AY.50.002065
ORF1029Q29XCaaTaa9292B.1.1600.002869
ORF1029Q29XCaaTaa9191R.10.008191
ORF1029Q29XCaaTaa8787AY.30.000865
ORF1029Q29XCaaTaa8080B.1.10.001451
ORF1029Q29XCaaTaa7070B.1.1.2140.003882
ORF1029Q29XCaaTaa6767AY.1190.002366
ORF1029Q29XCaaTaa5757AY.230.003976
ORF1029Q29XCaaTaa5757AY.390.001409
ORF1029Q29XCaaTaa5050B.1.1.5190.001986
ORF1029Q29XCaaTaa4949P.1.160.018331
ORF1029Q29XCaaTaa4848AY.260.001359
ORF1029Q29XCaaTaa4848B.1.2340.006333
ORF1029Q29XCaaTaa4848C.370.005571
ORF1029Q29XCaaTaa4444AY.1020.001167
ORF1029Q29XCaaTaa4444B.1.4700.061798
ORF1029Q29XCaaTaa4343B.1.5950.011221
ORF1029Q29XCaaTaa4343Q.80.007091
ORF1029Q29XCaaTaa4141AY.530.011788
ORF1029Q29XCaaTaa3939Q.10.004927
ORF1029Q29XCaaTaa3636B.1.4270.001818
ORF1029Q29XCaaTaa3535A.10.009865
ORF1029Q29XCaaTaa3232B.1.1.3521
ORF1029Q29XCaaTaa3131B.1.3510.000922
ORF1029Q29XCaaTaa3131C.20.5
ORF1029Q29XCaaTaa3030AY.470.000933
ORF1029Q29XCaaTaa2929B.1.5260.000682
ORF1029Q29XCaaTaa2727AY.1050.017363
ORF1029Q29XCaaTaa2727B.1.1.2980.023276
ORF1029Q29XCaaTaa2727B.1.2210.001918
ORF1029Q29XCaaTaa2626B.1.438.10.002789
ORF1029Q29XCaaTaa2424AY.200.000933
ORF1029Q29XCaaTaa2424AY.860.019917
ORF1029Q29XCaaTaa2323AY.60.000946
ORF1029Q29XCaaTaa2222B.1.5270.081481
ORF1029Q29XCaaTaa2020AY.1170.00169
ORF1029Q29XCaaTaa2020AY.9.20.000735
ORF1029Q29XCaaTaa2020B.1.360.002918
ORF1029Q29XCaaTaa1919AY.850.008116
ORF1029Q29XCaaTaa1919B.1.3750.015574
ORF1029Q29XCaaTaa1818B.1.617.10.002321
ORF1029Q29XCaaTaa1818P.20.003359
ORF1029Q29XCaaTaa1616AY.1090.011834
ORF1029Q29XCaaTaa1616AY.116.10.004983
ORF1029Q29XCaaTaa1515AY.1200.000558
ORF1029Q29XCaaTaa1515AY.240.006466
ORF1029Q29XCaaTaa1515AY.46.30.014006
ORF1029Q29XCaaTaa1515B.1.1.2220.00306
ORF1029Q29XCaaTaa1414AY.1000.000644
ORF1029Q29XCaaTaa1414AY.98.10.000678
ORF1029Q29XCaaTaa1313AY.3.10.001108
ORF1029Q29XCaaTaa1313AY.5.30.004386
ORF1029Q29XCaaTaa1313B.1.6250.030588
ORF1029Q29XCaaTaa1212AY.1010.005885
ORF1029Q29XCaaTaa1212AY.4.50.00129
ORF1029Q29XCaaTaa1212AY.46.60.000866
ORF1029Q29XCaaTaa1212AY.940.005312
ORF1029Q29XCaaTaa1212B.1.1.10.00392
ORF1029Q29XCaaTaa1212B.1.2400.002587
ORF1029Q29XCaaTaa1111AY.610.001153
ORF1029Q29XCaaTaa1011D.20.00075
ORF1029Q29XCaaTaa1010AY.1210.001353
ORF1029Q29XCaaTaa1010AY.5.40.002767
ORF1029Q29XCaaTaa1010B.1.1.470.053476
ORF1029Q29XCaaTaa1010B.1.6210.000885
ORF1029Q29XCaaTaa99AY.1110.001648
ORF1029Q29XCaaTaa99AY.680.002464
ORF1029Q29XCaaTaa99B.1.1.1350.042254
ORF1029Q29XCaaTaa99B.1.5250.001018
ORF1029Q29XCaaTaa88AY.370.002528
ORF1029Q29XCaaTaa88AY.460.000833
ORF1029Q29XCaaTaa88AY.7.10.000902
ORF1029Q29XCaaTaa88AY.750.000448
ORF1029Q29XCaaTaa77AY.710.003325
ORF1029Q29XCaaTaa77B.1.1.280.002179
ORF1029Q29XCaaTaa77B.1.1770.000092
ORF1029Q29XCaaTaa77B.1.2580.000466
ORF1029Q29XCaaTaa77B.1.428.20.233333
ORF1029Q29XCaaTaa77P.1.120.003388
ORF1029Q29XCaaTaa66AY.1040.011905
ORF1029Q29XCaaTaa66AY.39.10.000238
ORF1029Q29XCaaTaa66AY.4.20.00013
ORF1029Q29XCaaTaa66AY.450.00073
ORF1029Q29XCaaTaa66AY.690.00112
ORF1029Q29XCaaTaa66B.1.5960.000523
ORF1029Q29XCaaTaa66B.1.6370.000438
ORF1029Q29XCaaTaa66P.1.150.001394
ORF1029Q29XCaaTaa55AY.1130.000712
ORF1029Q29XCaaTaa55AY.790.006053
ORF1029Q29XCaaTaa55AY.980.000395
ORF1029Q29XCaaTaa55AY.99.20.000461
ORF1029Q29XCaaTaa55B.1.1.2040.015198
ORF1029Q29XCaaTaa55B.1.1.2690.006766
ORF1029Q29XCaaTaa55B.1.1430.106383
ORF1029Q29XCaaTaa55B.1.3110.001373
ORF1029Q29XCaaTaa55B.1.36.180.002101
ORF1029Q29XCaaTaa55C.260.036765
ORF1029Q29XCaaTaa55C.37.10.013089
ORF1029Q29XCaaTaa44AY.29.10.000882
ORF1029Q29XCaaTaa44AY.300.001583
ORF1029Q29XCaaTaa44AY.39.20.006163
ORF1029Q29XCaaTaa44AY.46.40.000658
ORF1029Q29XCaaTaa44AY.590.002119
ORF1029Q29XCaaTaa44AY.880.003537
ORF1029Q29XCaaTaa44AY.90.00027
ORF1029Q29XCaaTaa44B.1.1.2200.007435
ORF1029Q29XCaaTaa44B.1.1.3580.137931
ORF1029Q29XCaaTaa44B.1.1310.035088
ORF1029Q29XCaaTaa44B.1.36.290.002069
ORF1029Q29XCaaTaa44B.1.3970.019417
ORF1029Q29XCaaTaa44B.1.5990.014599
ORF1029Q29XCaaTaa44B.6.60.003556
ORF1029Q29XCaaTaa33A.2.50.001497
ORF1029Q29XCaaTaa33A.23.10.002113
ORF1029Q29XCaaTaa33A.270.004967
ORF1029Q29XCaaTaa33AY.270.000194
ORF1029Q29XCaaTaa33AY.330.0002
ORF1029Q29XCaaTaa33AY.340.000291
ORF1029Q29XCaaTaa33AY.360.000445
ORF1029Q29XCaaTaa33AY.4.10.002212
ORF1029Q29XCaaTaa33AY.540.000286
ORF1029Q29XCaaTaa33AY.560.004815
ORF1029Q29XCaaTaa33AY.730.001996
ORF1029Q29XCaaTaa33AY.820.004071
ORF1029Q29XCaaTaa33AY.840.001312
ORF1029Q29XCaaTaa33AY.920.000862
ORF1029Q29XCaaTaa33AY.990.003148
ORF1029Q29XCaaTaa33B.1.1.2440.046154
ORF1029Q29XCaaTaa33B.1.1.3110.001074
ORF1029Q29XCaaTaa33B.1.1.3160.002775
ORF1029Q29XCaaTaa33B.1.1.3170.001235
ORF1029Q29XCaaTaa33B.1.1.4320.003797
ORF1029Q29XCaaTaa33B.1.1.630.001157
ORF1029Q29XCaaTaa33B.1.1190.031579
ORF1029Q29XCaaTaa33B.1.2390.003663
ORF1029Q29XCaaTaa33B.1.2410.002435
ORF1029Q29XCaaTaa33B.1.2800.021429
ORF1029Q29XCaaTaa33B.1.3490.002144
ORF1029Q29XCaaTaa33B.1.3960.002117
ORF1029Q29XCaaTaa33B.1.4800.007463
ORF1029Q29XCaaTaa33B.1.5170.001281
ORF1029Q29XCaaTaa33C.160.003181
ORF1029Q29XCaaTaa33P.1.170.000485
ORF1029Q29XCaaTaa33S.10.014851
ORF1029Q29XCaaTaa22A0.000774
ORF1029Q29XCaaTaa22A.280.005291
ORF1029Q29XCaaTaa22AY.1080.002205
ORF1029Q29XCaaTaa22AY.1160.000574
ORF1029Q29XCaaTaa22AY.320.001065
ORF1029Q29XCaaTaa22AY.4.2.10.000298
ORF1029Q29XCaaTaa22AY.670.000929
ORF1029Q29XCaaTaa22AY.70.000392
ORF1029Q29XCaaTaa22AY.740.000231
ORF1029Q29XCaaTaa22AY.75.10.000361
ORF1029Q29XCaaTaa22AY.770.002255
ORF1029Q29XCaaTaa22B.1.1.1410.004024
ORF1029Q29XCaaTaa22B.1.1.1890.003026
ORF1029Q29XCaaTaa22B.1.1.2070.002364
ORF1029Q29XCaaTaa22B.1.1.2160.001781
ORF1029Q29XCaaTaa22B.1.1.2280.006098
ORF1029Q29XCaaTaa22B.1.1.3060.000877
ORF1029Q29XCaaTaa22B.1.1.3250.051282
ORF1029Q29XCaaTaa22B.1.1.3260.003521
ORF1029Q29XCaaTaa22B.1.1.370.000386
ORF1029Q29XCaaTaa22B.1.1.3820.071429
ORF1029Q29XCaaTaa22B.1.1.3890.012121
ORF1029Q29XCaaTaa22B.1.1.4110.029412
ORF1029Q29XCaaTaa22B.1.1.4240.090909
ORF1029Q29XCaaTaa22B.1.1180.013423
ORF1029Q29XCaaTaa22B.1.160.270.030303
ORF1029Q29XCaaTaa22B.1.2600.006689
ORF1029Q29XCaaTaa22B.1.3460.002621
ORF1029Q29XCaaTaa22B.1.351.30.001753
ORF1029Q29XCaaTaa22B.1.3560.003454
ORF1029Q29XCaaTaa22B.1.36.10.002281
ORF1029Q29XCaaTaa22B.1.4690.00722
ORF1029Q29XCaaTaa22B.1.4740.003802
ORF1029Q29XCaaTaa22B.1.5560.015038
ORF1029Q29XCaaTaa22B.1.5760.001813
ORF1029Q29XCaaTaa22B.1.6090.000959
ORF1029Q29XCaaTaa22B.1.6200.001892
ORF1029Q29XCaaTaa22C.380.016129
ORF1029Q29XCaaTaa22P.30.00319
ORF1029Q29XCaaTaa11A.150.015873
ORF1029Q29XCaaTaa11A.2.5.20.001572
ORF1029Q29XCaaTaa11A.250.018182
ORF1029Q29XCaaTaa11A.60.005128
ORF1029Q29XCaaTaa11AD.20.000219
ORF1029Q29XCaaTaa11AE.10.011364
ORF1029Q29XCaaTaa11AE.80.000489
ORF1029Q29XCaaTaa11AY.1060.000335
ORF1029Q29XCaaTaa11AY.1100.000113
ORF1029Q29XCaaTaa11AY.120.000316
ORF1029Q29XCaaTaa11AY.120.10.000321
ORF1029Q29XCaaTaa11AY.120.20.001285
ORF1029Q29XCaaTaa11AY.130.000161
ORF1029Q29XCaaTaa11AY.170.008197
ORF1029Q29XCaaTaa11AY.190.00114
ORF1029Q29XCaaTaa11AY.20.000356
ORF1029Q29XCaaTaa11AY.280.00189
ORF1029Q29XCaaTaa11AY.39.1.10.000725
ORF1029Q29XCaaTaa11AY.4.40.000409
ORF1029Q29XCaaTaa11AY.46.10.001027
ORF1029Q29XCaaTaa11AY.46.20.000635
ORF1029Q29XCaaTaa11AY.550.000917
ORF1029Q29XCaaTaa11AY.570.000656
ORF1029Q29XCaaTaa11AY.580.000907
ORF1029Q29XCaaTaa11AY.620.000436
ORF1029Q29XCaaTaa11AY.650.000533
ORF1029Q29XCaaTaa11AY.780.001541
ORF1029Q29XCaaTaa11AY.9.10.000084
ORF1029Q29XCaaTaa11AY.910.00073
ORF1029Q29XCaaTaa11AY.960.002075
ORF1029Q29XCaaTaa11AZ.10.000867
ORF1029Q29XCaaTaa11B0.000128
ORF1029Q29XCaaTaa11B.1.1.100.001115
ORF1029Q29XCaaTaa11B.1.1.1150.008929
ORF1029Q29XCaaTaa11B.1.1.1380.006061
ORF1029Q29XCaaTaa11B.1.1.1480.008772
ORF1029Q29XCaaTaa11B.1.1.2190.005
ORF1029Q29XCaaTaa11B.1.1.2250.007194
ORF1029Q29XCaaTaa11B.1.1.2310.003096
ORF1029Q29XCaaTaa11B.1.1.2320.001815
ORF1029Q29XCaaTaa11B.1.1.2370.005405
ORF1029Q29XCaaTaa11B.1.1.270.00565
ORF1029Q29XCaaTaa11B.1.1.2910.000742
ORF1029Q29XCaaTaa11B.1.1.300.076923
ORF1029Q29XCaaTaa11B.1.1.3020.002075
ORF1029Q29XCaaTaa11B.1.1.3070.002532
ORF1029Q29XCaaTaa11B.1.1.3120.001912
ORF1029Q29XCaaTaa11B.1.1.3290.003846
ORF1029Q29XCaaTaa11B.1.1.330.000421
ORF1029Q29XCaaTaa11B.1.1.3430.020833
ORF1029Q29XCaaTaa11B.1.1.3690.000446
ORF1029Q29XCaaTaa11B.1.1.3720.000689
ORF1029Q29XCaaTaa11B.1.1.3880.045455
ORF1029Q29XCaaTaa11B.1.1.4040.015873
ORF1029Q29XCaaTaa11B.1.1.4330.001425
ORF1029Q29XCaaTaa11B.1.1.4340.000349
ORF1029Q29XCaaTaa11B.1.1.4480.002033
ORF1029Q29XCaaTaa11B.1.1.4670.019231
ORF1029Q29XCaaTaa11B.1.1.570.011494
ORF1029Q29XCaaTaa11B.1.1.700.000341
ORF1029Q29XCaaTaa11B.1.110.30.000718
ORF1029Q29XCaaTaa11B.1.1110.001175
ORF1029Q29XCaaTaa11B.1.1470.000756
ORF1029Q29XCaaTaa11B.1.1590.012195
ORF1029Q29XCaaTaa11B.1.160.70.002079
ORF1029Q29XCaaTaa11B.1.1670.007812
ORF1029Q29XCaaTaa11B.1.177.160.000664
ORF1029Q29XCaaTaa11B.1.177.440.000519
ORF1029Q29XCaaTaa11B.1.177.730.000566
ORF1029Q29XCaaTaa11B.1.177.790.002342
ORF1029Q29XCaaTaa11B.1.177.810.000189
ORF1029Q29XCaaTaa11B.1.2010.005682
ORF1029Q29XCaaTaa11B.1.214.20.0006
ORF1029Q29XCaaTaa11B.1.220.001318
ORF1029Q29XCaaTaa11B.1.2320.000537
ORF1029Q29XCaaTaa11B.1.258.110.000396
ORF1029Q29XCaaTaa11B.1.258.30.001675
ORF1029Q29XCaaTaa11B.1.2700.005618
ORF1029Q29XCaaTaa11B.1.2980.002114
ORF1029Q29XCaaTaa11B.1.3380.008621
ORF1029Q29XCaaTaa11B.1.351.20.000303
ORF1029Q29XCaaTaa11B.1.36.160.001425
ORF1029Q29XCaaTaa11B.1.36.170.000494
ORF1029Q29XCaaTaa11B.1.36.260.002857
ORF1029Q29XCaaTaa11B.1.36.390.002217
ORF1029Q29XCaaTaa11B.1.36.80.001
ORF1029Q29XCaaTaa11B.1.3610.001289
ORF1029Q29XCaaTaa11B.1.3850.010638
ORF1029Q29XCaaTaa11B.1.3910.001127
ORF1029Q29XCaaTaa11B.1.3980.002976
ORF1029Q29XCaaTaa11B.1.4000.000429
ORF1029Q29XCaaTaa11B.1.4080.00369
ORF1029Q29XCaaTaa11B.1.4200.010417
ORF1029Q29XCaaTaa11B.1.4530.003236
ORF1029Q29XCaaTaa11B.1.4590.004082
ORF1029Q29XCaaTaa11B.1.466.20.000391
ORF1029Q29XCaaTaa11B.1.4990.00105
ORF1029Q29XCaaTaa11B.1.5090.000866
ORF1029Q29XCaaTaa11B.1.5230.002451
ORF1029Q29XCaaTaa11B.1.5240.001406
ORF1029Q29XCaaTaa11B.1.5410.004425
ORF1029Q29XCaaTaa11B.1.5490.007194
ORF1029Q29XCaaTaa11B.1.5580.004566
ORF1029Q29XCaaTaa11B.1.5610.000397
ORF1029Q29XCaaTaa11B.1.5650.00081
ORF1029Q29XCaaTaa11B.1.5680.001111
ORF1029Q29XCaaTaa11B.1.5750.000303
ORF1029Q29XCaaTaa11B.1.5770.000687
ORF1029Q29XCaaTaa11B.1.5780.017857
ORF1029Q29XCaaTaa11B.1.5800.004065
ORF1029Q29XCaaTaa11B.1.6100.003546
ORF1029Q29XCaaTaa11B.1.6230.000536
ORF1029Q29XCaaTaa11B.1.6280.000352
ORF1029Q29XCaaTaa11B.280.003279
ORF1029Q29XCaaTaa11B.30.000831
ORF1029Q29XCaaTaa11B.60.00091
ORF1029Q29XCaaTaa11C.320.023256
ORF1029Q29XCaaTaa11C.350.000774
ORF1029Q29XCaaTaa11C.360.000911
ORF1029Q29XCaaTaa11C.36.30.000567
ORF1029Q29XCaaTaa11C.60.037037
ORF1029Q29XCaaTaa11N.40.004255
ORF1029Q29XCaaTaa11N.90.005952
ORF1029Q29XCaaTaa11P.1.100.000269
ORF1029Q29XCaaTaa11P.1.110.010204
ORF1029Q29XCaaTaa11P.1.130.000898
ORF1029Q29XCaaTaa11P.1.70.000319
ORF1029Q29XCaaTaa11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.