CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 29

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1029Q29XnonsynCaaTaa10230102280.99980429642-29644
ORF1029Q29XnonsynCaATaG1023020.00019550329642-29644
ORF1029Q29QsyncaAcaG235235129642-29644
ORF1029Q29RnonsyncAacGa1811800.99447529642-29644
ORF1029Q29RnonsyncAAcGG18110.0055248629642-29644
ORF1029Q29LnonsyncAacTa1721590.92441929642-29644
ORF1029Q29LnonsynCAaTTa17240.023255829642-29644
ORF1029Q29LnonsynCAATTG17240.023255829642-29644
ORF1029Q29LnonsyncAAcTG17230.017441929642-29644
ORF1029Q29LnonsyncAAcTC17210.0058139529642-29644
ORF1029Q29LnonsyncAAcTT17210.0058139529642-29644
ORF1029Q29HnonsyncaAcaT152770.50657929642-29644
ORF1029Q29HnonsyncaAcaC152750.49342129642-29644
ORF1029Q29deldelCAA---4040129642-29644
ORF1029Q29EnonsynCaaGaa1313129642-29644
ORF1029Q29KnonsynCaaAaa55129642-29644
ORF1029Q29PnonsyncAacCa44129642-29644
ORF1029Q29del1delcAac-a22129642-29644
ORF1029Q29SnonsynCAATCT11129642-29644
ORF1029Q29NnonsynCaAAaT11129642-29644
ORF1029Q29YnonsynCaATaT11129642-29644

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1029Q29XCaaTaa1022810230All0.001956
ORF1029Q29XCaATaG210230All0
ORF1029Q29XCaaTaa34223422B.1.1.70.003063
ORF1029Q29XCaaTaa12521252AY.40.001949
ORF1029Q29XCaaTaa377377B.1.617.20.00142
ORF1029Q29XCaaTaa237237P.1.140.011329
ORF1029Q29QcaAcaG235235All0.000045
ORF1029Q29XCaaTaa215215B.1.1.2840.023091
ORF1029Q29RcAacGa180181All0.000034
ORF1029Q29RcAAcGG1181All0
ORF1029Q29XCaaTaa181181AY.420.007282
ORF1029Q29LcAacTa159172All0.00003
ORF1029Q29LCAaTTa4172All0.000001
ORF1029Q29LCAATTG4172All0.000001
ORF1029Q29LcAAcTG3172All0.000001
ORF1029Q29LcAAcTC1172All0
ORF1029Q29LcAAcTT1172All0
ORF1029Q29XCaaTaa172172AY.440.001047
ORF1029Q29XCaaTaa159159AY.250.000956
ORF1029Q29XCaaTaa158158AY.1030.000981
ORF1029Q29XCaaTaa158158B.1.4280.161224
ORF1029Q29HcaAcaT77152All0.000015
ORF1029Q29HcaAcaC75152All0.000014
ORF1029Q29XCaaTaa152152AY.430.000673
ORF1029Q29XCaaTaa152152B.1.4290.003576
ORF1029Q29XCaaTaa151151B.1.2430.010507
ORF1029Q29XCaaTaa150150C.2.11
ORF1029Q29XCaaTaa142142P.10.002237
ORF1029Q29XCaaTaa137137AY.1180.008583
ORF1029Q29XCaaTaa136136AY.290.002145
ORF1029Q29XCaaTaa131131B.10.0012
ORF1029Q29XCaaTaa127128B.1.20.001118
ORF1029Q29XCaATaG1128B.1.20.000009
ORF1029Q29XCaaTaa100100AY.50.002065
ORF1029Q29XCaaTaa9292B.1.1600.002869
ORF1029Q29XCaaTaa9191R.10.008191
ORF1029Q29XCaaTaa8787AY.30.000865
ORF1029Q29XCaaTaa8080B.1.10.001451
ORF1029Q29QcaAcaG7575B.1.5260.001763
ORF1029Q29XCaaTaa7070B.1.1.2140.003882
ORF1029Q29XCaaTaa6767AY.1190.002366
ORF1029Q29QcaAcaG6363AY.40.000098
ORF1029Q29XCaaTaa5757AY.230.003976
ORF1029Q29XCaaTaa5757AY.390.001409
ORF1029Q29RcAacGa5252B.1.2180.268041
ORF1029Q29XCaaTaa5050B.1.1.5190.001986
ORF1029Q29XCaaTaa4949P.1.160.018331
ORF1029Q29XCaaTaa4848AY.260.001359
ORF1029Q29XCaaTaa4848B.1.2340.006333
ORF1029Q29XCaaTaa4848C.370.005571
ORF1029Q29XCaaTaa4444AY.1020.001167
ORF1029Q29XCaaTaa4444B.1.4700.061798
ORF1029Q29XCaaTaa4343B.1.5950.011221
ORF1029Q29XCaaTaa4343Q.80.007091
ORF1029Q29XCaaTaa4141AY.530.011788
ORF1029Q29delCAA---4040All0.000008
ORF1029Q29XCaaTaa3939Q.10.004927
ORF1029Q29XCaaTaa3636B.1.4270.001818
ORF1029Q29XCaaTaa3535A.10.009865
ORF1029Q29XCaaTaa3232B.1.1.3521
ORF1029Q29LcAacTa3232B.1.1.70.000029
ORF1029Q29XCaaTaa3131B.1.3510.000922
ORF1029Q29XCaaTaa3131C.20.5
ORF1029Q29XCaaTaa3030AY.470.000933
ORF1029Q29RcAacGa3030B.1.1.70.000027
ORF1029Q29XCaaTaa2929B.1.5260.000682
ORF1029Q29HcaAcaT2728B.10.000247
ORF1029Q29HcaAcaC128B.10.000009
ORF1029Q29XCaaTaa2727AY.1050.017363
ORF1029Q29XCaaTaa2727B.1.1.2980.023276
ORF1029Q29XCaaTaa2727B.1.2210.001918
ORF1029Q29HcaAcaC2426AY.1030.000149
ORF1029Q29HcaAcaT226AY.1030.000012
ORF1029Q29XCaaTaa2626B.1.438.10.002789
ORF1029Q29LcAacTa2525AY.4.20.000542
ORF1029Q29QcaAcaG2525B.1.1.70.000022
ORF1029Q29XCaaTaa2424AY.200.000933
ORF1029Q29XCaaTaa2424AY.860.019917
ORF1029Q29XCaaTaa2323AY.60.000946
ORF1029Q29LcAacTa1723B.1.20.00015
ORF1029Q29LCAATTG223B.1.20.000018
ORF1029Q29LCAaTTa223B.1.20.000018
ORF1029Q29LcAAcTG223B.1.20.000018
ORF1029Q29RcAacGa2323B.1.617.20.000087
ORF1029Q29HcaAcaT2122B.1.1.70.000019
ORF1029Q29HcaAcaC122B.1.1.70.000001
ORF1029Q29XCaaTaa2222B.1.5270.081481
ORF1029Q29XCaaTaa2020AY.1170.00169
ORF1029Q29XCaaTaa2020AY.9.20.000735
ORF1029Q29XCaaTaa2020B.1.360.002918
ORF1029Q29XCaaTaa1919AY.850.008116
ORF1029Q29XCaaTaa1919B.1.3750.015574
ORF1029Q29XCaaTaa1818B.1.617.10.002321
ORF1029Q29XCaaTaa1818P.20.003359
ORF1029Q29XCaaTaa1616AY.1090.011834
ORF1029Q29XCaaTaa1616AY.116.10.004983
ORF1029Q29QcaAcaG1616B.1.617.20.00006
ORF1029Q29XCaaTaa1515AY.1200.000558
ORF1029Q29XCaaTaa1515AY.240.006466
ORF1029Q29XCaaTaa1515AY.46.30.014006
ORF1029Q29XCaaTaa1515B.1.1.2220.00306
ORF1029Q29XCaaTaa1414AY.1000.000644
ORF1029Q29HcaAcaC1414AY.250.000084
ORF1029Q29RcAacGa1414AY.40.000022
ORF1029Q29XCaaTaa1414AY.98.10.000678
ORF1029Q29ECaaGaa1313All0.000002
ORF1029Q29XCaaTaa1313AY.3.10.001108
ORF1029Q29LcAacTa1213AY.440.000073
ORF1029Q29LCAaTTa113AY.440.000006
ORF1029Q29XCaaTaa1313AY.5.30.004386
ORF1029Q29XCaaTaa1313B.1.6250.030588
ORF1029Q29XCaaTaa1212AY.1010.005885
ORF1029Q29XCaaTaa1212AY.4.50.00129
ORF1029Q29XCaaTaa1212AY.46.60.000866
ORF1029Q29XCaaTaa1212AY.940.005312
ORF1029Q29XCaaTaa1212B.1.1.10.00392
ORF1029Q29LcAacTa1212B.1.1.2970.026846
ORF1029Q29XCaaTaa1212B.1.2400.002587
ORF1029Q29XCaaTaa1111AY.610.001153
ORF1029Q29QcaAcaG1111B.1.1600.000343
ORF1029Q29RcAacGa1111B.1.621.10.005564
ORF1029Q29XCaaTaa1011D.20.00075
ORF1029Q29XCaATaG111D.20.000075
ORF1029Q29XCaaTaa1010AY.1210.001353
ORF1029Q29XCaaTaa1010AY.5.40.002767
ORF1029Q29XCaaTaa1010B.1.1.470.053476
ORF1029Q29XCaaTaa1010B.1.6210.000885
ORF1029Q29XCaaTaa99AY.1110.001648
ORF1029Q29HcaAcaC99AY.40.000014
ORF1029Q29XCaaTaa99AY.680.002464
ORF1029Q29XCaaTaa99B.1.1.1350.042254
ORF1029Q29XCaaTaa99B.1.5250.001018
ORF1029Q29XCaaTaa88AY.370.002528
ORF1029Q29LcAacTa88AY.430.000035
ORF1029Q29QcaAcaG88AY.430.000035
ORF1029Q29XCaaTaa88AY.460.000833
ORF1029Q29XCaaTaa88AY.7.10.000902
ORF1029Q29XCaaTaa88AY.750.000448
ORF1029Q29HcaAcaC58B.1.20.000044
ORF1029Q29HcaAcaT38B.1.20.000026
ORF1029Q29LcAacTa77AY.40.000011
ORF1029Q29HcaAcaT77AY.46.40.001152
ORF1029Q29XCaaTaa77AY.710.003325
ORF1029Q29XCaaTaa77B.1.1.280.002179
ORF1029Q29XCaaTaa77B.1.1770.000092
ORF1029Q29XCaaTaa77B.1.2580.000466
ORF1029Q29XCaaTaa77B.1.428.20.233333
ORF1029Q29HcaAcaC57C.370.00058
ORF1029Q29HcaAcaT27C.370.000232
ORF1029Q29XCaaTaa77P.1.120.003388
ORF1029Q29XCaaTaa66AY.1040.011905
ORF1029Q29XCaaTaa66AY.39.10.000238
ORF1029Q29XCaaTaa66AY.4.20.00013
ORF1029Q29XCaaTaa66AY.450.00073
ORF1029Q29XCaaTaa66AY.690.00112
ORF1029Q29QcaAcaG66B.1.1770.000079
ORF1029Q29XCaaTaa66B.1.5960.000523
ORF1029Q29ECaaGaa66B.1.617.10.000774
ORF1029Q29LcAacTa66B.1.617.20.000023
ORF1029Q29XCaaTaa66B.1.6370.000438
ORF1029Q29XCaaTaa66P.1.150.001394
ORF1029Q29LcAacTa66P.20.00112
ORF1029Q29KCaaAaa55All0.000001
ORF1029Q29XCaaTaa55AY.1130.000712
ORF1029Q29QcaAcaG55AY.250.00003
ORF1029Q29XCaaTaa55AY.790.006053
ORF1029Q29XCaaTaa55AY.980.000395
ORF1029Q29XCaaTaa55AY.99.20.000461
ORF1029Q29delCAA---55B.10.000046
ORF1029Q29XCaaTaa55B.1.1.2040.015198
ORF1029Q29XCaaTaa55B.1.1.2690.006766
ORF1029Q29XCaaTaa55B.1.1430.106383
ORF1029Q29delCAA---55B.1.20.000044
ORF1029Q29XCaaTaa55B.1.3110.001373
ORF1029Q29XCaaTaa55B.1.36.180.002101
ORF1029Q29XCaaTaa55C.260.036765
ORF1029Q29XCaaTaa55C.37.10.013089
ORF1029Q29PcAacCa44All0.000001
ORF1029Q29RcAacGa44AY.230.000279
ORF1029Q29XCaaTaa44AY.29.10.000882
ORF1029Q29XCaaTaa44AY.300.001583
ORF1029Q29XCaaTaa44AY.39.20.006163
ORF1029Q29HcaAcaC34AY.430.000013
ORF1029Q29HcaAcaT14AY.430.000004
ORF1029Q29XCaaTaa44AY.46.40.000658
ORF1029Q29XCaaTaa44AY.590.002119
ORF1029Q29XCaaTaa44AY.880.003537
ORF1029Q29XCaaTaa44AY.90.00027
ORF1029Q29XCaaTaa44B.1.1.2200.007435
ORF1029Q29XCaaTaa44B.1.1.3580.137931
ORF1029Q29RcAacGa44B.1.1.5190.000159
ORF1029Q29XCaaTaa44B.1.1310.035088
ORF1029Q29XCaaTaa44B.1.36.290.002069
ORF1029Q29XCaaTaa44B.1.3970.019417
ORF1029Q29RcAacGa44B.1.5960.000349
ORF1029Q29XCaaTaa44B.1.5990.014599
ORF1029Q29HcaAcaT44B.1.617.20.000015
ORF1029Q29XCaaTaa44B.6.60.003556
ORF1029Q29LcAacTa14D.20.000075
ORF1029Q29LcAAcTG14D.20.000075
ORF1029Q29LCAaTTa14D.20.000075
ORF1029Q29LCAATTG14D.20.000075
ORF1029Q29XCaaTaa33A.2.50.001497
ORF1029Q29XCaaTaa33A.23.10.002113
ORF1029Q29XCaaTaa33A.270.004967
ORF1029Q29QcaAcaG33AY.200.000117
ORF1029Q29LcAacTa33AY.250.000018
ORF1029Q29XCaaTaa33AY.270.000194
ORF1029Q29XCaaTaa33AY.330.0002
ORF1029Q29XCaaTaa33AY.340.000291
ORF1029Q29XCaaTaa33AY.360.000445
ORF1029Q29HcaAcaC33AY.360.000445
ORF1029Q29XCaaTaa33AY.4.10.002212
ORF1029Q29HcaAcaC23AY.440.000012
ORF1029Q29HcaAcaT13AY.440.000006
ORF1029Q29XCaaTaa33AY.540.000286
ORF1029Q29XCaaTaa33AY.560.004815
ORF1029Q29RcAacGa33AY.710.001425
ORF1029Q29XCaaTaa33AY.730.001996
ORF1029Q29XCaaTaa33AY.820.004071
ORF1029Q29XCaaTaa33AY.840.001312
ORF1029Q29XCaaTaa33AY.920.000862
ORF1029Q29RcAacGa33AY.980.000237
ORF1029Q29XCaaTaa33AY.990.003148
ORF1029Q29QcaAcaG33B.10.000027
ORF1029Q29QcaAcaG33B.1.10.000054
ORF1029Q29XCaaTaa33B.1.1.2440.046154
ORF1029Q29XCaaTaa33B.1.1.3110.001074
ORF1029Q29XCaaTaa33B.1.1.3160.002775
ORF1029Q29XCaaTaa33B.1.1.3170.001235
ORF1029Q29XCaaTaa33B.1.1.4320.003797
ORF1029Q29LcAacTa23B.1.1.5190.000079
ORF1029Q29LCAATTG13B.1.1.5190.00004
ORF1029Q29XCaaTaa33B.1.1.630.001157
ORF1029Q29delCAA---33B.1.1.70.000003
ORF1029Q29XCaaTaa33B.1.1190.031579
ORF1029Q29LcAacTa33B.1.1770.00004
ORF1029Q29XCaaTaa33B.1.2390.003663
ORF1029Q29XCaaTaa33B.1.2410.002435
ORF1029Q29XCaaTaa33B.1.2800.021429
ORF1029Q29XCaaTaa33B.1.3490.002144
ORF1029Q29XCaaTaa33B.1.3960.002117
ORF1029Q29LcAacTa33B.1.4270.000151
ORF1029Q29delCAA---33B.1.438.10.000322
ORF1029Q29XCaaTaa33B.1.4800.007463
ORF1029Q29XCaaTaa33B.1.5170.001281
ORF1029Q29XCaaTaa33C.160.003181
ORF1029Q29RcAacGa33P.10.000047
ORF1029Q29XCaaTaa33P.1.170.000485
ORF1029Q29XCaaTaa33S.10.014851
ORF1029Q29XCaaTaa22A0.000774
ORF1029Q29XCaaTaa22A.280.005291
ORF1029Q29del1cAac-a22All0
ORF1029Q29RcAacGa22AY.1010.000981
ORF1029Q29RcAacGa22AY.1030.000012
ORF1029Q29XCaaTaa22AY.1080.002205
ORF1029Q29XCaaTaa22AY.1160.000574
ORF1029Q29LcAacTa22AY.240.000862
ORF1029Q29delCAA---22AY.250.000012
ORF1029Q29RcAacGa22AY.250.000012
ORF1029Q29RcAacGa22AY.30.00002
ORF1029Q29HcaAcaC22AY.30.00002
ORF1029Q29XCaaTaa22AY.320.001065
ORF1029Q29QcaAcaG22AY.320.001065
ORF1029Q29delCAA---22AY.39.10.000079
ORF1029Q29HcaAcaC12AY.39.10.00004
ORF1029Q29HcaAcaT12AY.39.10.00004
ORF1029Q29QcaAcaG22AY.4.20.000043
ORF1029Q29XCaaTaa22AY.4.2.10.000298
ORF1029Q29delCAA---22AY.440.000012
ORF1029Q29XCaaTaa22AY.670.000929
ORF1029Q29XCaaTaa22AY.70.000392
ORF1029Q29XCaaTaa22AY.740.000231
ORF1029Q29XCaaTaa22AY.75.10.000361
ORF1029Q29XCaaTaa22AY.770.002255
ORF1029Q29RcAacGa22B0.000256
ORF1029Q29LcAacTa22B.10.000018
ORF1029Q29RcAacGa22B.10.000018
ORF1029Q29XCaaTaa22B.1.1.1410.004024
ORF1029Q29XCaaTaa22B.1.1.1890.003026
ORF1029Q29RcAacGa22B.1.1.1890.003026
ORF1029Q29XCaaTaa22B.1.1.2070.002364
ORF1029Q29XCaaTaa22B.1.1.2160.001781
ORF1029Q29XCaaTaa22B.1.1.2280.006098
ORF1029Q29XCaaTaa22B.1.1.3060.000877
ORF1029Q29XCaaTaa22B.1.1.3250.051282
ORF1029Q29XCaaTaa22B.1.1.3260.003521
ORF1029Q29XCaaTaa22B.1.1.370.000386
ORF1029Q29XCaaTaa22B.1.1.3820.071429
ORF1029Q29XCaaTaa22B.1.1.3890.012121
ORF1029Q29XCaaTaa22B.1.1.4110.029412
ORF1029Q29XCaaTaa22B.1.1.4240.090909
ORF1029Q29LcAAcTT12B.1.1.5180.006329
ORF1029Q29LcAacTa12B.1.1.5180.006329
ORF1029Q29XCaaTaa22B.1.1180.013423
ORF1029Q29XCaaTaa22B.1.160.270.030303
ORF1029Q29XCaaTaa22B.1.2600.006689
ORF1029Q29XCaaTaa22B.1.3460.002621
ORF1029Q29XCaaTaa22B.1.351.30.001753
ORF1029Q29XCaaTaa22B.1.3560.003454
ORF1029Q29XCaaTaa22B.1.36.10.002281
ORF1029Q29XCaaTaa22B.1.4690.00722
ORF1029Q29XCaaTaa22B.1.4740.003802
ORF1029Q29HcaAcaT22B.1.5240.002813
ORF1029Q29XCaaTaa22B.1.5560.015038
ORF1029Q29HcaAcaT22B.1.5640.000852
ORF1029Q29XCaaTaa22B.1.5760.001813
ORF1029Q29XCaaTaa22B.1.6090.000959
ORF1029Q29XCaaTaa22B.1.6200.001892
ORF1029Q29XCaaTaa22C.380.016129
ORF1029Q29delCAA---22P.10.000032
ORF1029Q29XCaaTaa22P.30.00319
ORF1029Q29delCAA---11A.10.000282
ORF1029Q29XCaaTaa11A.150.015873
ORF1029Q29XCaaTaa11A.2.5.20.001572
ORF1029Q29XCaaTaa11A.250.018182
ORF1029Q29XCaaTaa11A.60.005128
ORF1029Q29XCaaTaa11AD.20.000219
ORF1029Q29XCaaTaa11AE.10.011364
ORF1029Q29XCaaTaa11AE.80.000489
ORF1029Q29YCaATaT11All0
ORF1029Q29NCaAAaT11All0
ORF1029Q29SCAATCT11All0
ORF1029Q29PcAacCa11AY.1030.000006
ORF1029Q29LcAacTa11AY.1030.000006
ORF1029Q29XCaaTaa11AY.1060.000335
ORF1029Q29XCaaTaa11AY.1100.000113
ORF1029Q29LcAacTa11AY.1130.000142
ORF1029Q29XCaaTaa11AY.120.000316
ORF1029Q29HcaAcaT11AY.1200.000037
ORF1029Q29LcAacTa11AY.1200.000037
ORF1029Q29PcAacCa11AY.1200.000037
ORF1029Q29XCaaTaa11AY.120.10.000321
ORF1029Q29HcaAcaC11AY.120.10.000321
ORF1029Q29XCaaTaa11AY.120.20.001285
ORF1029Q29XCaaTaa11AY.130.000161
ORF1029Q29HcaAcaC11AY.140.000088
ORF1029Q29LcAacTa11AY.160.00038
ORF1029Q29XCaaTaa11AY.170.008197
ORF1029Q29XCaaTaa11AY.190.00114
ORF1029Q29XCaaTaa11AY.20.000356
ORF1029Q29KCaaAaa11AY.250.000006
ORF1029Q29ECaaGaa11AY.260.000028
ORF1029Q29LcAacTa11AY.270.000065
ORF1029Q29XCaaTaa11AY.280.00189
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