CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 26

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1026Y26YsyntaCtaT42164216129633-29635
ORF1026Y26HnonsynTacCac3663650.99726829633-29635
ORF1026Y26HnonsynTaCCaT36610.0027322429633-29635
ORF1026Y26CnonsyntActGc72710.98611129633-29635
ORF1026Y26CnonsyntACtGT7210.013888929633-29635
ORF1026Y26XnonsyntaCtaA44320.72727329633-29635
ORF1026Y26XnonsyntaCtaG44110.2529633-29635
ORF1026Y26XnonsyntACtGA4410.022727329633-29635
ORF1026Y26deldelTAC---3232129633-29635
ORF1026Y26DnonsynTacGac1818129633-29635
ORF1026Y26FnonsyntActTc1010129633-29635
ORF1026Y26NnonsynTacAac650.83333329633-29635
ORF1026Y26NnonsynTaCAaT610.16666729633-29635
ORF1026Y26SnonsyntActCc420.529633-29635
ORF1026Y26SnonsynTAcAGc410.2529633-29635
ORF1026Y26SnonsyntACtCT410.2529633-29635
ORF1026Y26del2deltACt--320.66666729633-29635
ORF1026Y26del2delTACC--310.33333329633-29635
ORF1026Y26LnonsynTAcCTc11129633-29635

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1026Y26YtaCtaT42164216All0.000806
ORF1026Y26YtaCtaT11851185B.1.1.70.001061
ORF1026Y26YtaCtaT10371037AY.40.001614
ORF1026Y26HTacCac365366All0.00007
ORF1026Y26HTaCCaT1366All0
ORF1026Y26YtaCtaT274274B.1.617.20.001032
ORF1026Y26YtaCtaT162162AY.430.000718
ORF1026Y26YtaCtaT109109B.1.1.4160.098643
ORF1026Y26YtaCtaT103103B.1.10.001869
ORF1026Y26YtaCtaT9696AY.440.000584
ORF1026Y26YtaCtaT8181AY.250.000487
ORF1026Y26CtActGc7172All0.000014
ORF1026Y26CtACtGT172All0
ORF1026Y26YtaCtaT6565AY.1030.000404
ORF1026Y26YtaCtaT5858B.1.5260.001363
ORF1026Y26HTacCac5858B.1.6370.004238
ORF1026Y26YtaCtaT5757B.1.1.2840.006122
ORF1026Y26YtaCtaT5252AY.30.000517
ORF1026Y26YtaCtaT4848B.10.00044
ORF1026Y26XtaCtaA3244All0.000006
ORF1026Y26XtaCtaG1144All0.000002
ORF1026Y26XtACtGA144All0
ORF1026Y26HTacCac4343B.1.1.70.000038
ORF1026Y26YtaCtaT4040AY.610.004191
ORF1026Y26HTacCac3939AY.390.000964
ORF1026Y26YtaCtaT3636B.1.20.000317
ORF1026Y26YtaCtaT3434B.1.1770.000448
ORF1026Y26YtaCtaT3333B.1.1600.001029
ORF1026Y26delTAC---3232All0.000006
ORF1026Y26YtaCtaT3131AY.290.000489
ORF1026Y26HTacCac3030AY.40.000047
ORF1026Y26HTacCac3030B.1.1600.000936
ORF1026Y26YtaCtaT2727B.1.3110.007414
ORF1026Y26YtaCtaT2525AY.1110.004579
ORF1026Y26YtaCtaT2525B.1.360.003648
ORF1026Y26YtaCtaT2525B.50.961538
ORF1026Y26HTacCac2323AY.1020.00061
ORF1026Y26YtaCtaT2323AY.4.20.000499
ORF1026Y26CtActGc2323B.1.1.70.000021
ORF1026Y26YtaCtaT2121AY.4.2.10.003129
ORF1026Y26HTacCac2121B.1.617.20.000079
ORF1026Y26YtaCtaT2020AY.1200.000744
ORF1026Y26YtaCtaT2020P.10.000315
ORF1026Y26DTacGac1818All0.000003
ORF1026Y26YtaCtaT1818AY.50.000372
ORF1026Y26CtActGc1717AY.40.000026
ORF1026Y26HTacCac1717B.1.2210.001208
ORF1026Y26YtaCtaT1616AY.130.002576
ORF1026Y26YtaCtaT1515B.1.2210.001065
ORF1026Y26YtaCtaT1515B.1.2580.000998
ORF1026Y26YtaCtaT1515P.20.0028
ORF1026Y26YtaCtaT1414AY.1020.000371
ORF1026Y26YtaCtaT1414AY.360.002075
ORF1026Y26YtaCtaT1414B.1.4290.000329
ORF1026Y26YtaCtaT1414B.1.6370.001023
ORF1026Y26YtaCtaT1414C.370.001625
ORF1026Y26DTacGac1212AY.40.000019
ORF1026Y26YtaCtaT1212AY.700.002502
ORF1026Y26HTacCac1212B.1.10.000218
ORF1026Y26YtaCtaT1212B.1.2400.002587
ORF1026Y26FtActTc1010All0.000002
ORF1026Y26XtaCtaA910AY.250.000054
ORF1026Y26XtaCtaG110AY.250.000006
ORF1026Y26YtaCtaT1010R.10.0009
ORF1026Y26YtaCtaT88AY.3.10.000682
ORF1026Y26YtaCtaT88AY.390.000198
ORF1026Y26HTacCac88AY.440.000049
ORF1026Y26XtaCtaA68B.1.1.70.000005
ORF1026Y26XtaCtaG28B.1.1.70.000002
ORF1026Y26YtaCtaT77AY.750.000392
ORF1026Y26YtaCtaT77AY.9.20.000257
ORF1026Y26YtaCtaT77B.1.1.2910.005197
ORF1026Y26YtaCtaT77B.1.1.4640.010309
ORF1026Y26YtaCtaT77B.1.258.170.000728
ORF1026Y26YtaCtaT77B.1.3510.000208
ORF1026Y26YtaCtaT77B.1.6190.006098
ORF1026Y26NTacAac56All0.000001
ORF1026Y26NTaCAaT16All0
ORF1026Y26HTacCac66AY.230.000418
ORF1026Y26YtaCtaT66AY.260.00017
ORF1026Y26YtaCtaT66AY.9.10.000502
ORF1026Y26YtaCtaT66B.1.1.2160.005343
ORF1026Y26YtaCtaT66B.1.1.5190.000238
ORF1026Y26YtaCtaT66B.1.177.210.000459
ORF1026Y26YtaCtaT66B.1.4330.019169
ORF1026Y26HTacCac66B.1.5950.001566
ORF1026Y26XtaCtaA55AY.1000.00023
ORF1026Y26YtaCtaT55AY.200.000194
ORF1026Y26YtaCtaT55AY.420.000201
ORF1026Y26YtaCtaT55AY.470.000156
ORF1026Y26HTacCac55AY.50.000103
ORF1026Y26YtaCtaT55AY.60.000206
ORF1026Y26YtaCtaT55AY.75.10.000902
ORF1026Y26HTacCac55B.10.000046
ORF1026Y26CtActGc55B.1.1.2220.00102
ORF1026Y26HTacCac55B.1.1950.025126
ORF1026Y26delTAC---55B.1.20.000044
ORF1026Y26YtaCtaT55B.1.5950.001305
ORF1026Y26StActCc24All0
ORF1026Y26STAcAGc14All0
ORF1026Y26StACtCT14All0
ORF1026Y26HTacCac44AY.1030.000025
ORF1026Y26XtaCtaA44AY.1130.00057
ORF1026Y26HTacCac34AY.250.000018
ORF1026Y26HTaCCaT14AY.250.000006
ORF1026Y26YtaCtaT44AY.46.60.000289
ORF1026Y26YtaCtaT44AY.540.000381
ORF1026Y26YtaCtaT44AY.600.003752
ORF1026Y26YtaCtaT44B.1.4270.000202
ORF1026Y26YtaCtaT44B.1.5610.001588
ORF1026Y26YtaCtaT44B.1.5750.001214
ORF1026Y26YtaCtaT44B.400.001457
ORF1026Y26HTacCac44P.10.000063
ORF1026Y26YtaCtaT44Q.70.004444
ORF1026Y26HTacCac33A.2.5.20.004717
ORF1026Y26del2tACt--23All0
ORF1026Y26del2TACC--13All0
ORF1026Y26YtaCtaT33AY.1130.000427
ORF1026Y26HTacCac33AY.1180.000188
ORF1026Y26YtaCtaT33AY.140.000264
ORF1026Y26CtActGc33AY.140.000264
ORF1026Y26HTacCac33AY.30.00003
ORF1026Y26CtActGc33AY.4.50.000322
ORF1026Y26HTacCac33AY.9.20.00011
ORF1026Y26YtaCtaT33AY.980.000237
ORF1026Y26YtaCtaT33AY.990.003148
ORF1026Y26delTAC---33B.10.000027
ORF1026Y26YtaCtaT33B.1.1.2070.003546
ORF1026Y26YtaCtaT33B.1.1.2980.002586
ORF1026Y26YtaCtaT33B.1.1.3060.001315
ORF1026Y26YtaCtaT33B.1.1.4320.003797
ORF1026Y26YtaCtaT33B.1.1.5260.010638
ORF1026Y26YtaCtaT33B.1.177.680.045455
ORF1026Y26HTacCac33B.1.20.000026
ORF1026Y26YtaCtaT33B.1.2430.000209
ORF1026Y26YtaCtaT33B.1.2650.003812
ORF1026Y26YtaCtaT33B.1.36.170.001482
ORF1026Y26HTacCac33B.1.3750.002459
ORF1026Y26YtaCtaT33B.1.5030.007463
ORF1026Y26YtaCtaT33B.1.5880.00273
ORF1026Y26YtaCtaT33B.1.617.10.000387
ORF1026Y26YtaCtaT33B.1.6210.000266
ORF1026Y26YtaCtaT33C.350.002322
ORF1026Y26YtaCtaT33D.20.000225
ORF1026Y26YtaCtaT33P.1.170.000485
ORF1026Y26YtaCtaT33Q.10.000379
ORF1026Y26YtaCtaT22AY.100.00106
ORF1026Y26CtActGc22AY.1030.000012
ORF1026Y26YtaCtaT22AY.1180.000125
ORF1026Y26YtaCtaT22AY.1190.000071
ORF1026Y26YtaCtaT22AY.230.000139
ORF1026Y26delTAC---22AY.250.000012
ORF1026Y26CtActGc22AY.290.000032
ORF1026Y26YtaCtaT22AY.330.000134
ORF1026Y26YtaCtaT22AY.370.000632
ORF1026Y26delTAC---22AY.39.10.000079
ORF1026Y26CtActGc22AY.430.000009
ORF1026Y26delTAC---22AY.440.000012
ORF1026Y26CtActGc22AY.450.000243
ORF1026Y26YtaCtaT22AY.46.50.000397
ORF1026Y26YtaCtaT22AY.650.001066
ORF1026Y26YtaCtaT22AY.740.000231
ORF1026Y26YtaCtaT22AY.90.000135
ORF1026Y26YtaCtaT22AY.99.20.000184
ORF1026Y26YtaCtaT22B0.000256
ORF1026Y26FtActTc22B.10.000018
ORF1026Y26XtaCtaA22B.10.000018
ORF1026Y26YtaCtaT22B.1.1.3260.003521
ORF1026Y26YtaCtaT22B.1.1.630.000772
ORF1026Y26delTAC---22B.1.1.70.000002
ORF1026Y26YtaCtaT22B.1.1530.037736
ORF1026Y26YtaCtaT22B.1.177.860.000367
ORF1026Y26DTacGac22B.1.20.000018
ORF1026Y26YtaCtaT22B.1.3240.00321
ORF1026Y26YtaCtaT22B.1.351.30.001753
ORF1026Y26HTacCac22B.1.4290.000047
ORF1026Y26delTAC---22B.1.438.10.000215
ORF1026Y26YtaCtaT22B.1.438.10.000215
ORF1026Y26YtaCtaT22B.1.4450.023529
ORF1026Y26XtaCtaA22B.1.466.20.000782
ORF1026Y26HTacCac22B.1.617.10.000258
ORF1026Y26CtActGc22B.1.617.20.000008
ORF1026Y26CtActGc22B.1.6190.001742
ORF1026Y26HTacCac22C.350.001548
ORF1026Y26delTAC---22P.10.000032
ORF1026Y26XtaCtaA110.055556
ORF1026Y26delTAC---11A.10.000282
ORF1026Y26HTacCac11A.10.000282
ORF1026Y26YtaCtaT11A.20.000662
ORF1026Y26YtaCtaT11A.2.20.001689
ORF1026Y26YtaCtaT11A.30.002096
ORF1026Y26YtaCtaT11A.50.001923
ORF1026Y26YtaCtaT11A.60.005128
ORF1026Y26YtaCtaT11AD.20.000219
ORF1026Y26LTAcCTc11All0
ORF1026Y26YtaCtaT11AY.1000.000046
ORF1026Y26YtaCtaT11AY.1010.00049
ORF1026Y26FtActTc11AY.1030.000006
ORF1026Y26XtaCtaG11AY.1030.000006
ORF1026Y26YtaCtaT11AY.1050.000643
ORF1026Y26YtaCtaT11AY.1060.000335
ORF1026Y26YtaCtaT11AY.1100.000113
ORF1026Y26YtaCtaT11AY.1170.000085
ORF1026Y26STAcAGc11AY.1170.000085
ORF1026Y26CtActGc11AY.1170.000085
ORF1026Y26HTacCac11AY.1190.000035
ORF1026Y26HTacCac11AY.1200.000037
ORF1026Y26YtaCtaT11AY.1210.000135
ORF1026Y26YtaCtaT11AY.16.10.00047
ORF1026Y26YtaCtaT11AY.190.00114
ORF1026Y26NTacAac11AY.200.000039
ORF1026Y26CtACtGT11AY.250.000006
ORF1026Y26HTacCac11AY.260.000028
ORF1026Y26NTacAac11AY.270.000065
ORF1026Y26XtaCtaA11AY.290.000016
ORF1026Y26CtActGc11AY.29.10.000221
ORF1026Y26YtaCtaT11AY.29.10.000221
ORF1026Y26CtActGc11AY.30.00001
ORF1026Y26YtaCtaT11AY.300.000396
ORF1026Y26XtaCtaG11AY.39.10.00004
ORF1026Y26FtActTc11AY.40.000002
ORF1026Y26NTacAac11AY.40.000002
ORF1026Y26XtaCtaG11AY.4.20.000022
ORF1026Y26DTacGac11AY.4.40.000409
ORF1026Y26HTacCac11AY.410.000294
ORF1026Y26DTacGac11AY.430.000004
ORF1026Y26HTacCac11AY.430.000004
ORF1026Y26YtaCtaT11AY.450.000122
ORF1026Y26YtaCtaT11AY.460.000104
ORF1026Y26delTAC---11AY.46.60.000072
ORF1026Y26XtACtGA11AY.470.000031
ORF1026Y26HTacCac11AY.470.000031
ORF1026Y26StACtCT11AY.470.000031
ORF1026Y26FtActTc11AY.50.000021
ORF1026Y26YtaCtaT11AY.5.30.000337
ORF1026Y26YtaCtaT11AY.5.40.000277
ORF1026Y26HTacCac11AY.520.000814
ORF1026Y26LTAcCTc11AY.530.000288
ORF1026Y26YtaCtaT11AY.530.000288
ORF1026Y26CtActGc11AY.540.000095
ORF1026Y26YtaCtaT11AY.550.000917
ORF1026Y26YtaCtaT11AY.590.00053
ORF1026Y26FtActTc11AY.610.000105
ORF1026Y26delTAC---11AY.620.000436
ORF1026Y26YtaCtaT11AY.630.000387
ORF1026Y26delTAC---11AY.650.000533
ORF1026Y26HTacCac11AY.650.000533
ORF1026Y26YtaCtaT11AY.660.00107
ORF1026Y26StActCc11AY.690.000187
ORF1026Y26YtaCtaT11AY.70.000196
ORF1026Y26HTacCac11AY.740.000116
ORF1026Y26HTacCac11AY.750.000056
ORF1026Y26YtaCtaT11AY.770.001127
ORF1026Y26YtaCtaT11AY.80.000606
ORF1026Y26XtaCtaG11AY.850.000427
ORF1026Y26YtaCtaT11AY.890.004902
ORF1026Y26YtaCtaT11AY.940.000443
ORF1026Y26YtaCtaT11AY.98.10.000048
ORF1026Y26DTacGac11AZ.20.000821
ORF1026Y26YtaCtaT11AZ.50.003509
ORF1026Y26NTacAac11B.10.000009
ORF1026Y26del2TACC--11B.10.000009
ORF1026Y26CtActGc11B.10.000009
ORF1026Y26del2tACt--11B.1.10.000018
ORF1026Y26delTAC---11B.1.10.000018
ORF1026Y26YtaCtaT11B.1.1.1530.001095
ORF1026Y26HTacCac11B.1.1.2140.000055
ORF1026Y26YtaCtaT11B.1.1.2220.000204
ORF1026Y26YtaCtaT11B.1.1.2390.032258
ORF1026Y26YtaCtaT11B.1.1.2630.001558
ORF1026Y26YtaCtaT11B.1.1.270.00565
ORF1026Y26YtaCtaT11B.1.1.280.000311
ORF1026Y26YtaCtaT11B.1.1.3110.000358
ORF1026Y26YtaCtaT11B.1.1.3220.008772
ORF1026Y26YtaCtaT11B.1.1.330.000421
ORF1026Y26FtActTc11B.1.1.3720.000689
ORF1026Y26YtaCtaT11B.1.1.3720.000689
ORF1026Y26HTacCac11B.1.1.3720.000689
ORF1026Y26YtaCtaT11B.1.1.3980.003226
ORF1026Y26YtaCtaT11B.1.1.4090.002833
ORF1026Y26YtaCtaT11B.1.1.4130.006897
ORF1026Y26YtaCtaT11B.1.1.4340.000349
ORF1026Y26YtaCtaT11B.1.1.500.000679
ORF1026Y26DTacGac11B.1.1.70.000001
ORF1026Y26HTacCac11B.1.1.700.000341
ORF1026Y26YtaCtaT11B.1.1.700.000341
ORF1026Y26YtaCtaT11B.1.1470.000756
ORF1026Y26YtaCtaT11B.1.1580.02381
ORF1026Y26HTacCac11B.1.160.310.008065
ORF1026Y26YtaCtaT11B.1.1620.005025
ORF1026Y26delTAC---11B.1.1770.000013
ORF1026Y26HTacCac11B.1.1770.000013
ORF1026Y26YtaCtaT11B.1.177.320.00135
ORF1026Y26YtaCtaT11B.1.177.380.010417
ORF1026Y26YtaCtaT11B.1.177.40.000211
ORF1026Y26YtaCtaT11B.1.177.570.000281
ORF1026Y26NTaCAaT11B.1.177.630.002703
ORF1026Y26HTacCac11B.1.177.650.000665
ORF1026Y26XtaCtaA11B.1.177.730.000566
ORF1026Y26YtaCtaT11B.1.177.730.000566
ORF1026Y26YtaCtaT11B.1.177.750.001041
ORF1026Y26YtaCtaT11B.1.177.810.000189
ORF1026Y26FtActTc11B.1.20.000009
ORF1026Y26XtaCtaG11B.1.20.000009
ORF1026Y26YtaCtaT11B.1.221.20.004016
ORF1026Y26YtaCtaT11B.1.2360.002053
ORF1026Y26NTacAac11B.1.2430.00007
ORF1026Y26CtActGc11B.1.258.110.000396
ORF1026Y26delTAC---11B.1.258.160.001637
ORF1026Y26YtaCtaT11B.1.2790.000514
ORF1026Y26YtaCtaT11B.1.3490.000715
ORF1026Y26YtaCtaT11B.1.36.180.00042
ORF1026Y26YtaCtaT11B.1.36.290.000517
ORF1026Y26YtaCtaT11B.1.3810.007812
ORF1026Y26YtaCtaT11B.1.4000.000429
ORF1026Y26HTacCac11B.1.4050.012346
ORF1026Y26YtaCtaT11B.1.4110.003704
ORF1026Y26CtActGc11B.1.4220.000812
ORF1026Y26YtaCtaT11B.1.4390.005917
ORF1026Y26YtaCtaT11B.1.4560.003268
ORF1026Y26YtaCtaT11B.1.466.20.000391
ORF1026Y26YtaCtaT11B.1.5690.014493
ORF1026Y26delTAC---11B.1.5760.000907
ORF1026Y26YtaCtaT11B.1.5770.000687
ORF1026Y26delTAC---11B.1.5820.000491
ORF1026Y26HTacCac11B.1.5960.000087
ORF1026Y26XtaCtaA11B.1.5960.000087
ORF1026Y26YtaCtaT11B.1.5960.000087
ORF1026Y26YtaCtaT11B.1.6050.005952
ORF1026Y26XtaCtaG11B.1.617.10.000129
ORF1026Y26del2tACt--11B.1.617.20.000004
ORF1026Y26FtActTc11B.1.617.20.000004
ORF1026Y26delTAC---11B.1.617.20.000004
ORF1026Y26StActCc11B.1.617.20.000004
ORF1026Y26XtaCtaG11B.1.617.20.000004
ORF1026Y26HTacCac11B.1.6180.004032
ORF1026Y26HTacCac11B.1.6270.00202
ORF1026Y26YtaCtaT11C.10.002392
ORF1026Y26YtaCtaT11C.170.055556
ORF1026Y26YtaCtaT11C.360.000911
ORF1026Y26HTacCac11C.370.000116
ORF1026Y26delTAC---11C.370.000116
ORF1026Y26FtActTc11C.370.000116
ORF1026Y26YtaCtaT11C.400.027778
ORF1026Y26YtaCtaT11P.1.140.000048
ORF1026Y26delTAC---11P.1.170.000162
ORF1026Y26XtaCtaG11Q.40.000455
ORF1026Y26CtActGc11Q.80.000165