CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF10 | 26 | Y26Y | syn | taC | taT | 4216 | 4216 | 1 | 29633-29635 | |
ORF10 | 26 | Y26H | nonsyn | Tac | Cac | 366 | 365 | 0.997268 | 29633-29635 | |
ORF10 | 26 | Y26H | nonsyn | TaC | CaT | 366 | 1 | 0.00273224 | 29633-29635 | |
ORF10 | 26 | Y26C | nonsyn | tAc | tGc | 72 | 71 | 0.986111 | 29633-29635 | |
ORF10 | 26 | Y26C | nonsyn | tAC | tGT | 72 | 1 | 0.0138889 | 29633-29635 | |
ORF10 | 26 | Y26X | nonsyn | taC | taA | 44 | 32 | 0.727273 | 29633-29635 | |
ORF10 | 26 | Y26X | nonsyn | taC | taG | 44 | 11 | 0.25 | 29633-29635 | |
ORF10 | 26 | Y26X | nonsyn | tAC | tGA | 44 | 1 | 0.0227273 | 29633-29635 | |
ORF10 | 26 | Y26del | del | TAC | --- | 32 | 32 | 1 | 29633-29635 | |
ORF10 | 26 | Y26D | nonsyn | Tac | Gac | 18 | 18 | 1 | 29633-29635 | |
ORF10 | 26 | Y26F | nonsyn | tAc | tTc | 10 | 10 | 1 | 29633-29635 | |
ORF10 | 26 | Y26N | nonsyn | Tac | Aac | 6 | 5 | 0.833333 | 29633-29635 | |
ORF10 | 26 | Y26N | nonsyn | TaC | AaT | 6 | 1 | 0.166667 | 29633-29635 | |
ORF10 | 26 | Y26S | nonsyn | tAc | tCc | 4 | 2 | 0.5 | 29633-29635 | |
ORF10 | 26 | Y26S | nonsyn | TAc | AGc | 4 | 1 | 0.25 | 29633-29635 | |
ORF10 | 26 | Y26S | nonsyn | tAC | tCT | 4 | 1 | 0.25 | 29633-29635 | |
ORF10 | 26 | Y26del2 | del | tAC | t-- | 3 | 2 | 0.666667 | 29633-29635 | |
ORF10 | 26 | Y26del2 | del | TAC | C-- | 3 | 1 | 0.333333 | 29633-29635 | |
ORF10 | 26 | Y26L | nonsyn | TAc | CTc | 1 | 1 | 1 | 29633-29635 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF10 | 26 | Y26Y | taC | taT | 4216 | 4216 | All | 0.000806 |
ORF10 | 26 | Y26Y | taC | taT | 1185 | 1185 | B.1.1.7 | 0.001061 |
ORF10 | 26 | Y26Y | taC | taT | 1037 | 1037 | AY.4 | 0.001614 |
ORF10 | 26 | Y26H | Tac | Cac | 365 | 366 | All | 0.00007 |
ORF10 | 26 | Y26H | TaC | CaT | 1 | 366 | All | 0 |
ORF10 | 26 | Y26Y | taC | taT | 274 | 274 | B.1.617.2 | 0.001032 |
ORF10 | 26 | Y26Y | taC | taT | 162 | 162 | AY.43 | 0.000718 |
ORF10 | 26 | Y26Y | taC | taT | 109 | 109 | B.1.1.416 | 0.098643 |
ORF10 | 26 | Y26Y | taC | taT | 103 | 103 | B.1.1 | 0.001869 |
ORF10 | 26 | Y26Y | taC | taT | 96 | 96 | AY.44 | 0.000584 |
ORF10 | 26 | Y26Y | taC | taT | 81 | 81 | AY.25 | 0.000487 |
ORF10 | 26 | Y26C | tAc | tGc | 71 | 72 | All | 0.000014 |
ORF10 | 26 | Y26C | tAC | tGT | 1 | 72 | All | 0 |
ORF10 | 26 | Y26Y | taC | taT | 65 | 65 | AY.103 | 0.000404 |
ORF10 | 26 | Y26Y | taC | taT | 58 | 58 | B.1.526 | 0.001363 |
ORF10 | 26 | Y26H | Tac | Cac | 58 | 58 | B.1.637 | 0.004238 |
ORF10 | 26 | Y26Y | taC | taT | 57 | 57 | B.1.1.284 | 0.006122 |
ORF10 | 26 | Y26Y | taC | taT | 52 | 52 | AY.3 | 0.000517 |
ORF10 | 26 | Y26Y | taC | taT | 48 | 48 | B.1 | 0.00044 |
ORF10 | 26 | Y26X | taC | taA | 32 | 44 | All | 0.000006 |
ORF10 | 26 | Y26X | taC | taG | 11 | 44 | All | 0.000002 |
ORF10 | 26 | Y26X | tAC | tGA | 1 | 44 | All | 0 |
ORF10 | 26 | Y26H | Tac | Cac | 43 | 43 | B.1.1.7 | 0.000038 |
ORF10 | 26 | Y26Y | taC | taT | 40 | 40 | AY.61 | 0.004191 |
ORF10 | 26 | Y26H | Tac | Cac | 39 | 39 | AY.39 | 0.000964 |
ORF10 | 26 | Y26Y | taC | taT | 36 | 36 | B.1.2 | 0.000317 |
ORF10 | 26 | Y26Y | taC | taT | 34 | 34 | B.1.177 | 0.000448 |
ORF10 | 26 | Y26Y | taC | taT | 33 | 33 | B.1.160 | 0.001029 |
ORF10 | 26 | Y26del | TAC | --- | 32 | 32 | All | 0.000006 |
ORF10 | 26 | Y26Y | taC | taT | 31 | 31 | AY.29 | 0.000489 |
ORF10 | 26 | Y26H | Tac | Cac | 30 | 30 | AY.4 | 0.000047 |
ORF10 | 26 | Y26H | Tac | Cac | 30 | 30 | B.1.160 | 0.000936 |
ORF10 | 26 | Y26Y | taC | taT | 27 | 27 | B.1.311 | 0.007414 |
ORF10 | 26 | Y26Y | taC | taT | 25 | 25 | AY.111 | 0.004579 |
ORF10 | 26 | Y26Y | taC | taT | 25 | 25 | B.1.36 | 0.003648 |
ORF10 | 26 | Y26Y | taC | taT | 25 | 25 | B.5 | 0.961538 |
ORF10 | 26 | Y26H | Tac | Cac | 23 | 23 | AY.102 | 0.00061 |
ORF10 | 26 | Y26Y | taC | taT | 23 | 23 | AY.4.2 | 0.000499 |
ORF10 | 26 | Y26C | tAc | tGc | 23 | 23 | B.1.1.7 | 0.000021 |
ORF10 | 26 | Y26Y | taC | taT | 21 | 21 | AY.4.2.1 | 0.003129 |
ORF10 | 26 | Y26H | Tac | Cac | 21 | 21 | B.1.617.2 | 0.000079 |
ORF10 | 26 | Y26Y | taC | taT | 20 | 20 | AY.120 | 0.000744 |
ORF10 | 26 | Y26Y | taC | taT | 20 | 20 | P.1 | 0.000315 |
ORF10 | 26 | Y26D | Tac | Gac | 18 | 18 | All | 0.000003 |
ORF10 | 26 | Y26Y | taC | taT | 18 | 18 | AY.5 | 0.000372 |
ORF10 | 26 | Y26C | tAc | tGc | 17 | 17 | AY.4 | 0.000026 |
ORF10 | 26 | Y26H | Tac | Cac | 17 | 17 | B.1.221 | 0.001208 |
ORF10 | 26 | Y26Y | taC | taT | 16 | 16 | AY.13 | 0.002576 |
ORF10 | 26 | Y26Y | taC | taT | 15 | 15 | B.1.221 | 0.001065 |
ORF10 | 26 | Y26Y | taC | taT | 15 | 15 | B.1.258 | 0.000998 |
ORF10 | 26 | Y26Y | taC | taT | 15 | 15 | P.2 | 0.0028 |
ORF10 | 26 | Y26Y | taC | taT | 14 | 14 | AY.102 | 0.000371 |
ORF10 | 26 | Y26Y | taC | taT | 14 | 14 | AY.36 | 0.002075 |
ORF10 | 26 | Y26Y | taC | taT | 14 | 14 | B.1.429 | 0.000329 |
ORF10 | 26 | Y26Y | taC | taT | 14 | 14 | B.1.637 | 0.001023 |
ORF10 | 26 | Y26Y | taC | taT | 14 | 14 | C.37 | 0.001625 |
ORF10 | 26 | Y26D | Tac | Gac | 12 | 12 | AY.4 | 0.000019 |
ORF10 | 26 | Y26Y | taC | taT | 12 | 12 | AY.70 | 0.002502 |
ORF10 | 26 | Y26H | Tac | Cac | 12 | 12 | B.1.1 | 0.000218 |
ORF10 | 26 | Y26Y | taC | taT | 12 | 12 | B.1.240 | 0.002587 |
ORF10 | 26 | Y26F | tAc | tTc | 10 | 10 | All | 0.000002 |
ORF10 | 26 | Y26X | taC | taA | 9 | 10 | AY.25 | 0.000054 |
ORF10 | 26 | Y26X | taC | taG | 1 | 10 | AY.25 | 0.000006 |
ORF10 | 26 | Y26Y | taC | taT | 10 | 10 | R.1 | 0.0009 |
ORF10 | 26 | Y26Y | taC | taT | 8 | 8 | AY.3.1 | 0.000682 |
ORF10 | 26 | Y26Y | taC | taT | 8 | 8 | AY.39 | 0.000198 |
ORF10 | 26 | Y26H | Tac | Cac | 8 | 8 | AY.44 | 0.000049 |
ORF10 | 26 | Y26X | taC | taA | 6 | 8 | B.1.1.7 | 0.000005 |
ORF10 | 26 | Y26X | taC | taG | 2 | 8 | B.1.1.7 | 0.000002 |
ORF10 | 26 | Y26Y | taC | taT | 7 | 7 | AY.75 | 0.000392 |
ORF10 | 26 | Y26Y | taC | taT | 7 | 7 | AY.9.2 | 0.000257 |
ORF10 | 26 | Y26Y | taC | taT | 7 | 7 | B.1.1.291 | 0.005197 |
ORF10 | 26 | Y26Y | taC | taT | 7 | 7 | B.1.1.464 | 0.010309 |
ORF10 | 26 | Y26Y | taC | taT | 7 | 7 | B.1.258.17 | 0.000728 |
ORF10 | 26 | Y26Y | taC | taT | 7 | 7 | B.1.351 | 0.000208 |
ORF10 | 26 | Y26Y | taC | taT | 7 | 7 | B.1.619 | 0.006098 |
ORF10 | 26 | Y26N | Tac | Aac | 5 | 6 | All | 0.000001 |
ORF10 | 26 | Y26N | TaC | AaT | 1 | 6 | All | 0 |
ORF10 | 26 | Y26H | Tac | Cac | 6 | 6 | AY.23 | 0.000418 |
ORF10 | 26 | Y26Y | taC | taT | 6 | 6 | AY.26 | 0.00017 |
ORF10 | 26 | Y26Y | taC | taT | 6 | 6 | AY.9.1 | 0.000502 |
ORF10 | 26 | Y26Y | taC | taT | 6 | 6 | B.1.1.216 | 0.005343 |
ORF10 | 26 | Y26Y | taC | taT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF10 | 26 | Y26Y | taC | taT | 6 | 6 | B.1.177.21 | 0.000459 |
ORF10 | 26 | Y26Y | taC | taT | 6 | 6 | B.1.433 | 0.019169 |
ORF10 | 26 | Y26H | Tac | Cac | 6 | 6 | B.1.595 | 0.001566 |
ORF10 | 26 | Y26X | taC | taA | 5 | 5 | AY.100 | 0.00023 |
ORF10 | 26 | Y26Y | taC | taT | 5 | 5 | AY.20 | 0.000194 |
ORF10 | 26 | Y26Y | taC | taT | 5 | 5 | AY.42 | 0.000201 |
ORF10 | 26 | Y26Y | taC | taT | 5 | 5 | AY.47 | 0.000156 |
ORF10 | 26 | Y26H | Tac | Cac | 5 | 5 | AY.5 | 0.000103 |
ORF10 | 26 | Y26Y | taC | taT | 5 | 5 | AY.6 | 0.000206 |
ORF10 | 26 | Y26Y | taC | taT | 5 | 5 | AY.75.1 | 0.000902 |
ORF10 | 26 | Y26H | Tac | Cac | 5 | 5 | B.1 | 0.000046 |
ORF10 | 26 | Y26C | tAc | tGc | 5 | 5 | B.1.1.222 | 0.00102 |
ORF10 | 26 | Y26H | Tac | Cac | 5 | 5 | B.1.195 | 0.025126 |
ORF10 | 26 | Y26del | TAC | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF10 | 26 | Y26Y | taC | taT | 5 | 5 | B.1.595 | 0.001305 |
ORF10 | 26 | Y26S | tAc | tCc | 2 | 4 | All | 0 |
ORF10 | 26 | Y26S | TAc | AGc | 1 | 4 | All | 0 |
ORF10 | 26 | Y26S | tAC | tCT | 1 | 4 | All | 0 |
ORF10 | 26 | Y26H | Tac | Cac | 4 | 4 | AY.103 | 0.000025 |
ORF10 | 26 | Y26X | taC | taA | 4 | 4 | AY.113 | 0.00057 |
ORF10 | 26 | Y26H | Tac | Cac | 3 | 4 | AY.25 | 0.000018 |
ORF10 | 26 | Y26H | TaC | CaT | 1 | 4 | AY.25 | 0.000006 |
ORF10 | 26 | Y26Y | taC | taT | 4 | 4 | AY.46.6 | 0.000289 |
ORF10 | 26 | Y26Y | taC | taT | 4 | 4 | AY.54 | 0.000381 |
ORF10 | 26 | Y26Y | taC | taT | 4 | 4 | AY.60 | 0.003752 |
ORF10 | 26 | Y26Y | taC | taT | 4 | 4 | B.1.427 | 0.000202 |
ORF10 | 26 | Y26Y | taC | taT | 4 | 4 | B.1.561 | 0.001588 |
ORF10 | 26 | Y26Y | taC | taT | 4 | 4 | B.1.575 | 0.001214 |
ORF10 | 26 | Y26Y | taC | taT | 4 | 4 | B.40 | 0.001457 |
ORF10 | 26 | Y26H | Tac | Cac | 4 | 4 | P.1 | 0.000063 |
ORF10 | 26 | Y26Y | taC | taT | 4 | 4 | Q.7 | 0.004444 |
ORF10 | 26 | Y26H | Tac | Cac | 3 | 3 | A.2.5.2 | 0.004717 |
ORF10 | 26 | Y26del2 | tAC | t-- | 2 | 3 | All | 0 |
ORF10 | 26 | Y26del2 | TAC | C-- | 1 | 3 | All | 0 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | AY.113 | 0.000427 |
ORF10 | 26 | Y26H | Tac | Cac | 3 | 3 | AY.118 | 0.000188 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | AY.14 | 0.000264 |
ORF10 | 26 | Y26C | tAc | tGc | 3 | 3 | AY.14 | 0.000264 |
ORF10 | 26 | Y26H | Tac | Cac | 3 | 3 | AY.3 | 0.00003 |
ORF10 | 26 | Y26C | tAc | tGc | 3 | 3 | AY.4.5 | 0.000322 |
ORF10 | 26 | Y26H | Tac | Cac | 3 | 3 | AY.9.2 | 0.00011 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | AY.98 | 0.000237 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | AY.99 | 0.003148 |
ORF10 | 26 | Y26del | TAC | --- | 3 | 3 | B.1 | 0.000027 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.1.207 | 0.003546 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.1.298 | 0.002586 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.1.432 | 0.003797 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.1.526 | 0.010638 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.177.68 | 0.045455 |
ORF10 | 26 | Y26H | Tac | Cac | 3 | 3 | B.1.2 | 0.000026 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.243 | 0.000209 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.265 | 0.003812 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.36.17 | 0.001482 |
ORF10 | 26 | Y26H | Tac | Cac | 3 | 3 | B.1.375 | 0.002459 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.503 | 0.007463 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.588 | 0.00273 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | B.1.621 | 0.000266 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | C.35 | 0.002322 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | D.2 | 0.000225 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | P.1.17 | 0.000485 |
ORF10 | 26 | Y26Y | taC | taT | 3 | 3 | Q.1 | 0.000379 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.10 | 0.00106 |
ORF10 | 26 | Y26C | tAc | tGc | 2 | 2 | AY.103 | 0.000012 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.118 | 0.000125 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.119 | 0.000071 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.23 | 0.000139 |
ORF10 | 26 | Y26del | TAC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF10 | 26 | Y26C | tAc | tGc | 2 | 2 | AY.29 | 0.000032 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.33 | 0.000134 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.37 | 0.000632 |
ORF10 | 26 | Y26del | TAC | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF10 | 26 | Y26C | tAc | tGc | 2 | 2 | AY.43 | 0.000009 |
ORF10 | 26 | Y26del | TAC | --- | 2 | 2 | AY.44 | 0.000012 |
ORF10 | 26 | Y26C | tAc | tGc | 2 | 2 | AY.45 | 0.000243 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.46.5 | 0.000397 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.65 | 0.001066 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.74 | 0.000231 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.9 | 0.000135 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | AY.99.2 | 0.000184 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B | 0.000256 |
ORF10 | 26 | Y26F | tAc | tTc | 2 | 2 | B.1 | 0.000018 |
ORF10 | 26 | Y26X | taC | taA | 2 | 2 | B.1 | 0.000018 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF10 | 26 | Y26del | TAC | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B.1.153 | 0.037736 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF10 | 26 | Y26D | Tac | Gac | 2 | 2 | B.1.2 | 0.000018 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B.1.324 | 0.00321 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF10 | 26 | Y26H | Tac | Cac | 2 | 2 | B.1.429 | 0.000047 |
ORF10 | 26 | Y26del | TAC | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF10 | 26 | Y26Y | taC | taT | 2 | 2 | B.1.445 | 0.023529 |
ORF10 | 26 | Y26X | taC | taA | 2 | 2 | B.1.466.2 | 0.000782 |
ORF10 | 26 | Y26H | Tac | Cac | 2 | 2 | B.1.617.1 | 0.000258 |
ORF10 | 26 | Y26C | tAc | tGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF10 | 26 | Y26C | tAc | tGc | 2 | 2 | B.1.619 | 0.001742 |
ORF10 | 26 | Y26H | Tac | Cac | 2 | 2 | C.35 | 0.001548 |
ORF10 | 26 | Y26del | TAC | --- | 2 | 2 | P.1 | 0.000032 |
ORF10 | 26 | Y26X | taC | taA | 1 | 1 | 0.055556 | |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | A.1 | 0.000282 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | A.1 | 0.000282 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | A.2 | 0.000662 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | A.2.2 | 0.001689 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | A.3 | 0.002096 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | A.5 | 0.001923 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | A.6 | 0.005128 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AD.2 | 0.000219 |
ORF10 | 26 | Y26L | TAc | CTc | 1 | 1 | All | 0 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.100 | 0.000046 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.101 | 0.00049 |
ORF10 | 26 | Y26F | tAc | tTc | 1 | 1 | AY.103 | 0.000006 |
ORF10 | 26 | Y26X | taC | taG | 1 | 1 | AY.103 | 0.000006 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.105 | 0.000643 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.106 | 0.000335 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.110 | 0.000113 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF10 | 26 | Y26S | TAc | AGc | 1 | 1 | AY.117 | 0.000085 |
ORF10 | 26 | Y26C | tAc | tGc | 1 | 1 | AY.117 | 0.000085 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.119 | 0.000035 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.120 | 0.000037 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.121 | 0.000135 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.16.1 | 0.00047 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.19 | 0.00114 |
ORF10 | 26 | Y26N | Tac | Aac | 1 | 1 | AY.20 | 0.000039 |
ORF10 | 26 | Y26C | tAC | tGT | 1 | 1 | AY.25 | 0.000006 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.26 | 0.000028 |
ORF10 | 26 | Y26N | Tac | Aac | 1 | 1 | AY.27 | 0.000065 |
ORF10 | 26 | Y26X | taC | taA | 1 | 1 | AY.29 | 0.000016 |
ORF10 | 26 | Y26C | tAc | tGc | 1 | 1 | AY.29.1 | 0.000221 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.29.1 | 0.000221 |
ORF10 | 26 | Y26C | tAc | tGc | 1 | 1 | AY.3 | 0.00001 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.30 | 0.000396 |
ORF10 | 26 | Y26X | taC | taG | 1 | 1 | AY.39.1 | 0.00004 |
ORF10 | 26 | Y26F | tAc | tTc | 1 | 1 | AY.4 | 0.000002 |
ORF10 | 26 | Y26N | Tac | Aac | 1 | 1 | AY.4 | 0.000002 |
ORF10 | 26 | Y26X | taC | taG | 1 | 1 | AY.4.2 | 0.000022 |
ORF10 | 26 | Y26D | Tac | Gac | 1 | 1 | AY.4.4 | 0.000409 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.41 | 0.000294 |
ORF10 | 26 | Y26D | Tac | Gac | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.45 | 0.000122 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.46 | 0.000104 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF10 | 26 | Y26X | tAC | tGA | 1 | 1 | AY.47 | 0.000031 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.47 | 0.000031 |
ORF10 | 26 | Y26S | tAC | tCT | 1 | 1 | AY.47 | 0.000031 |
ORF10 | 26 | Y26F | tAc | tTc | 1 | 1 | AY.5 | 0.000021 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.5.3 | 0.000337 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.5.4 | 0.000277 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.52 | 0.000814 |
ORF10 | 26 | Y26L | TAc | CTc | 1 | 1 | AY.53 | 0.000288 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF10 | 26 | Y26C | tAc | tGc | 1 | 1 | AY.54 | 0.000095 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.55 | 0.000917 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.59 | 0.00053 |
ORF10 | 26 | Y26F | tAc | tTc | 1 | 1 | AY.61 | 0.000105 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.63 | 0.000387 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.65 | 0.000533 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.66 | 0.00107 |
ORF10 | 26 | Y26S | tAc | tCc | 1 | 1 | AY.69 | 0.000187 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.7 | 0.000196 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.74 | 0.000116 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | AY.75 | 0.000056 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.77 | 0.001127 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.8 | 0.000606 |
ORF10 | 26 | Y26X | taC | taG | 1 | 1 | AY.85 | 0.000427 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.89 | 0.004902 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.94 | 0.000443 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AY.98.1 | 0.000048 |
ORF10 | 26 | Y26D | Tac | Gac | 1 | 1 | AZ.2 | 0.000821 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | AZ.5 | 0.003509 |
ORF10 | 26 | Y26N | Tac | Aac | 1 | 1 | B.1 | 0.000009 |
ORF10 | 26 | Y26del2 | TAC | C-- | 1 | 1 | B.1 | 0.000009 |
ORF10 | 26 | Y26C | tAc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF10 | 26 | Y26del2 | tAC | t-- | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.239 | 0.032258 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF10 | 26 | Y26F | tAc | tTc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.1.372 | 0.000689 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF10 | 26 | Y26D | Tac | Gac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.1.70 | 0.000341 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.147 | 0.000756 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.158 | 0.02381 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.160.31 | 0.008065 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.162 | 0.005025 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.177 | 0.000013 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.177.38 | 0.010417 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF10 | 26 | Y26N | TaC | AaT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.177.65 | 0.000665 |
ORF10 | 26 | Y26X | taC | taA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF10 | 26 | Y26F | tAc | tTc | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 26 | Y26X | taC | taG | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.236 | 0.002053 |
ORF10 | 26 | Y26N | Tac | Aac | 1 | 1 | B.1.243 | 0.00007 |
ORF10 | 26 | Y26C | tAc | tGc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.279 | 0.000514 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.349 | 0.000715 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.381 | 0.007812 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.400 | 0.000429 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.405 | 0.012346 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.411 | 0.003704 |
ORF10 | 26 | Y26C | tAc | tGc | 1 | 1 | B.1.422 | 0.000812 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.439 | 0.005917 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.456 | 0.003268 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.569 | 0.014493 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.577 | 0.000687 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.596 | 0.000087 |
ORF10 | 26 | Y26X | taC | taA | 1 | 1 | B.1.596 | 0.000087 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.596 | 0.000087 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | B.1.605 | 0.005952 |
ORF10 | 26 | Y26X | taC | taG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF10 | 26 | Y26del2 | tAC | t-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 26 | Y26F | tAc | tTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 26 | Y26S | tAc | tCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 26 | Y26X | taC | taG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.618 | 0.004032 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | B.1.627 | 0.00202 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | C.1 | 0.002392 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | C.17 | 0.055556 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | C.36 | 0.000911 |
ORF10 | 26 | Y26H | Tac | Cac | 1 | 1 | C.37 | 0.000116 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | C.37 | 0.000116 |
ORF10 | 26 | Y26F | tAc | tTc | 1 | 1 | C.37 | 0.000116 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | C.40 | 0.027778 |
ORF10 | 26 | Y26Y | taC | taT | 1 | 1 | P.1.14 | 0.000048 |
ORF10 | 26 | Y26del | TAC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF10 | 26 | Y26X | taC | taG | 1 | 1 | Q.4 | 0.000455 |
ORF10 | 26 | Y26C | tAc | tGc | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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