CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 25

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1025N25NsynaaCaaT36483648129630-29632
ORF1025N25SnonsynaAcaGc641641129630-29632
ORF1025N25DnonsynAacGac384384129630-29632
ORF1025N25KnonsynaaCaaA101990.98019829630-29632
ORF1025N25KnonsynaaCaaG10120.01980229630-29632
ORF1025N25YnonsynAacTac5151129630-29632
ORF1025N25GnonsynAAcGGc3737129630-29632
ORF1025N25deldelAAC---3232129630-29632
ORF1025N25InonsynaAcaTc20190.9529630-29632
ORF1025N25InonsynaACaTA2010.0529630-29632
ORF1025N25TnonsynaAcaCc1010129630-29632
ORF1025N25HnonsynAacCac66129630-29632
ORF1025N25XnonsynAACTGA11129630-29632
ORF1025N25del2delaACa--11129630-29632
ORF1025N25VnonsynAACGTG11129630-29632
ORF1025N25del1delAac-ac11129630-29632
ORF1025N25RnonsynaACaGA11129630-29632

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1025N25NaaCaaT36483648All0.000698
ORF1025N25NaaCaaT893893C.36.30.506523
ORF1025N25NaaCaaT845845B.1.1.70.000756
ORF1025N25SaAcaGc641641All0.000123
ORF1025N25NaaCaaT480480AY.40.000747
ORF1025N25DAacGac384384All0.000073
ORF1025N25SaAcaGc349349AY.610.036567
ORF1025N25NaaCaaT322322C.36.3.10.875
ORF1025N25DAacGac134134B.1.617.20.000505
ORF1025N25SaAcaGc113113B.1.617.20.000425
ORF1025N25DAacGac106106AY.40.000165
ORF1025N25NaaCaaT104104B.1.20.000916
ORF1025N25KaaCaaA99101All0.000019
ORF1025N25KaaCaaG2101All0
ORF1025N25DAacGac7878AY.980.006162
ORF1025N25NaaCaaT7272AY.430.000319
ORF1025N25NaaCaaT7272B.1.617.20.000271
ORF1025N25NaaCaaT6868AY.1190.002401
ORF1025N25NaaCaaT6464AY.270.004142
ORF1025N25SaAcaGc6464AY.75.10.01154
ORF1025N25YAacTac5151All0.00001
ORF1025N25NaaCaaT5151B.10.000467
ORF1025N25KaaCaaA5050B.1.1.70.000045
ORF1025N25NaaCaaT4949A.270.081126
ORF1025N25NaaCaaT4747B.1.4290.001106
ORF1025N25NaaCaaT4444AY.250.000265
ORF1025N25GAAcGGc3737All0.000007
ORF1025N25GAAcGGc3434B.1.20.000299
ORF1025N25delAAC---3232All0.000006
ORF1025N25NaaCaaT2929AY.1030.00018
ORF1025N25NaaCaaT2929C.360.026412
ORF1025N25YAacTac2828B.1.1.70.000025
ORF1025N25SaAcaGc2626AY.1170.002197
ORF1025N25NaaCaaT2525AY.30.000249
ORF1025N25NaaCaaT2525P.1.140.001195
ORF1025N25NaaCaaT2424B.1.1.2220.004896
ORF1025N25IaAcaTc1920All0.000004
ORF1025N25IaACaTA120All0
ORF1025N25SaAcaGc1919R.10.00171
ORF1025N25NaaCaaT1818B.1.1600.000561
ORF1025N25KaaCaaA1717AY.40.000026
ORF1025N25IaAcaTc1616B.1.1.70.000014
ORF1025N25NaaCaaT1515B.1.10.000272
ORF1025N25NaaCaaT1313AY.440.000079
ORF1025N25NaaCaaT1212P.10.000189
ORF1025N25NaaCaaT1111AY.390.000272
ORF1025N25NaaCaaT1111B.1.1770.000145
ORF1025N25TaAcaCc1010All0.000002
ORF1025N25NaaCaaT1010AY.260.000283
ORF1025N25NaaCaaT1010AY.610.001048
ORF1025N25SaAcaGc1010AY.700.002085
ORF1025N25DAacGac99AY.250.000054
ORF1025N25NaaCaaT99AY.290.000142
ORF1025N25KaaCaaA99AY.350.002097
ORF1025N25NaaCaaT99B.1.3510.000268
ORF1025N25NaaCaaT99Q.80.001484
ORF1025N25NaaCaaT88B.1.2400.001725
ORF1025N25NaaCaaT88B.1.3110.002197
ORF1025N25NaaCaaT88B.1.5260.000188
ORF1025N25NaaCaaT88P.1.170.001294
ORF1025N25NaaCaaT88R.10.00072
ORF1025N25NaaCaaT77B.1.2580.000466
ORF1025N25NaaCaaT77B.1.5960.00061
ORF1025N25NaaCaaT77C.370.000812
ORF1025N25HAacCac66All0.000001
ORF1025N25NaaCaaT66AY.1020.000159
ORF1025N25DAacGac66AY.1030.000037
ORF1025N25NaaCaaT66AY.1170.000507
ORF1025N25YAacTac66B.1.10.000109
ORF1025N25DAacGac66B.1.6120.015915
ORF1025N25NaaCaaT66B.1.6200.005676
ORF1025N25NaaCaaT66P.1.130.005391
ORF1025N25NaaCaaT55AY.10.001979
ORF1025N25NaaCaaT55AY.120.20.006427
ORF1025N25NaaCaaT55AY.4.20.000108
ORF1025N25NaaCaaT55AY.50.000103
ORF1025N25NaaCaaT55AY.99.20.000461
ORF1025N25NaaCaaT55B.1.1.390.002548
ORF1025N25delAAC---55B.1.20.000044
ORF1025N25NaaCaaT44AY.1000.000184
ORF1025N25NaaCaaT44AY.1200.000149
ORF1025N25NaaCaaT44AY.200.000155
ORF1025N25DAacGac44AY.260.000113
ORF1025N25SaAcaGc44AY.30.00004
ORF1025N25SaAcaGc44AY.40.000006
ORF1025N25SaAcaGc44AY.750.000224
ORF1025N25NaaCaaT44B.1.1.10.001307
ORF1025N25NaaCaaT44B.1.1.2940.005063
ORF1025N25DAacGac44B.1.1.70.000004
ORF1025N25NaaCaaT44B.1.177.170.003284
ORF1025N25NaaCaaT44B.1.4990.004202
ORF1025N25TaAcaCc44B.1.6210.000354
ORF1025N25NaaCaaT44C.140.017316
ORF1025N25NaaCaaT44D.20.0003
ORF1025N25NaaCaaT33AY.1070.001398
ORF1025N25NaaCaaT33AY.1180.000188
ORF1025N25DAacGac33AY.120.10.000963
ORF1025N25HAacCac33AY.250.000018
ORF1025N25DAacGac33AY.3.10.000256
ORF1025N25SaAcaGc33AY.46.20.001906
ORF1025N25NaaCaaT33AY.470.000093
ORF1025N25NaaCaaT33AY.510.002727
ORF1025N25SaAcaGc33AY.550.002752
ORF1025N25NaaCaaT33AY.90.000203
ORF1025N25DAacGac33AY.98.10.000145
ORF1025N25NaaCaaT33AY.98.10.000145
ORF1025N25delAAC---33B.10.000027
ORF1025N25NaaCaaT33B.1.1.1760.001318
ORF1025N25SaAcaGc33B.1.1.2220.000612
ORF1025N25NaaCaaT33B.1.1.280.000934
ORF1025N25NaaCaaT33B.1.1.2840.000322
ORF1025N25SaAcaGc33B.1.1.70.000003
ORF1025N25DAacGac33B.1.6370.000219
ORF1025N25KaaCaaA33P.1.170.000485
ORF1025N25YAacTac22AY.1020.000053
ORF1025N25KaaCaaA22AY.1200.000074
ORF1025N25DAacGac22AY.1200.000074
ORF1025N25NaaCaaT22AY.130.000322
ORF1025N25SaAcaGc22AY.16.10.00094
ORF1025N25SaAcaGc22AY.190.002281
ORF1025N25NaaCaaT22AY.230.000139
ORF1025N25YAacTac22AY.250.000012
ORF1025N25delAAC---22AY.250.000012
ORF1025N25SaAcaGc22AY.250.000012
ORF1025N25NaaCaaT22AY.330.000134
ORF1025N25delAAC---22AY.39.10.000079
ORF1025N25NaaCaaT22AY.4.50.000215
ORF1025N25NaaCaaT22AY.400.001929
ORF1025N25KaaCaaA22AY.440.000012
ORF1025N25delAAC---22AY.440.000012
ORF1025N25DAacGac22AY.46.40.000329
ORF1025N25NaaCaaT22AY.46.40.000329
ORF1025N25SaAcaGc22AY.50.000041
ORF1025N25NaaCaaT22AY.60.000082
ORF1025N25DAacGac22AY.610.00021
ORF1025N25SaAcaGc22AY.620.000871
ORF1025N25NaaCaaT22AY.770.002255
ORF1025N25SaAcaGc22AY.980.000158
ORF1025N25NaaCaaT22B0.000256
ORF1025N25NaaCaaT22B.1.1.250.001137
ORF1025N25NaaCaaT22B.1.1.3980.006452
ORF1025N25NaaCaaT22B.1.1.500.001358
ORF1025N25NaaCaaT22B.1.1470.001512
ORF1025N25KaaCaaA22B.1.20.000018
ORF1025N25DAacGac22B.1.20.000018
ORF1025N25YAacTac22B.1.3110.000549
ORF1025N25SaAcaGc22B.1.3510.000059
ORF1025N25SaAcaGc22B.1.4160.002538
ORF1025N25DAacGac22B.1.4290.000047
ORF1025N25delAAC---22B.1.438.10.000215
ORF1025N25DAacGac22B.1.5960.000174
ORF1025N25KaaCaaA22B.1.617.20.000008
ORF1025N25NaaCaaT22B.1.6280.000705
ORF1025N25NaaCaaT22B.1.6370.000146
ORF1025N25NaaCaaT22C.160.002121
ORF1025N25SaAcaGc22P.10.000032
ORF1025N25delAAC---22P.10.000032
ORF1025N25DAacGac22P.10.000032
ORF1025N25NaaCaaT22W.40.002703
ORF1025N25KaaCaaA110.055556
ORF1025N25delAAC---11A.10.000282
ORF1025N25NaaCaaT11A.2.40.003367
ORF1025N25NaaCaaT11AD.20.000219
ORF1025N25NaaCaaT11AE.80.000489
ORF1025N25VAACGTG11All0
ORF1025N25XAACTGA11All0
ORF1025N25del2aACa--11All0
ORF1025N25RaACaGA11All0
ORF1025N25del1Aac-ac11All0
ORF1025N25SaAcaGc11AY.100.00053
ORF1025N25KaaCaaA11AY.1020.000027
ORF1025N25YAacTac11AY.1030.000006
ORF1025N25SaAcaGc11AY.1030.000006
ORF1025N25SaAcaGc11AY.1050.000643
ORF1025N25NaaCaaT11AY.1080.001103
ORF1025N25NaaCaaT11AY.1130.000142
ORF1025N25KaaCaaG11AY.1170.000085
ORF1025N25TaAcaCc11AY.1190.000035
ORF1025N25YAacTac11AY.1210.000135
ORF1025N25KaaCaaA11AY.1210.000135
ORF1025N25NaaCaaT11AY.1210.000135
ORF1025N25SaAcaGc11AY.230.00007
ORF1025N25DAacGac11AY.23.10.000417
ORF1025N25SaAcaGc11AY.240.000431
ORF1025N25DAacGac11AY.240.000431
ORF1025N25IaAcaTc11AY.250.000006
ORF1025N25GAAcGGc11AY.250.000006
ORF1025N25delAAC---11AY.30.00001
ORF1025N25NaaCaaT11AY.320.000532
ORF1025N25NaaCaaT11AY.34.10.00051
ORF1025N25YAacTac11AY.370.000316
ORF1025N25SaAcaGc11AY.370.000316
ORF1025N25NaaCaaT11AY.380.000499
ORF1025N25DAacGac11AY.390.000025
ORF1025N25SaAcaGc11AY.390.000025
ORF1025N25NaaCaaT11AY.39.10.00004
ORF1025N25SaAcaGc11AY.39.10.00004
ORF1025N25YAacTac11AY.40.000002
ORF1025N25YAacTac11AY.4.20.000022
ORF1025N25KaaCaaA11AY.4.50.000107
ORF1025N25NaaCaaT11AY.420.00004
ORF1025N25KaaCaaA11AY.430.000004
ORF1025N25SaAcaGc11AY.430.000004
ORF1025N25HAacCac11AY.430.000004
ORF1025N25TaAcaCc11AY.430.000004
ORF1025N25YAacTac11AY.440.000006
ORF1025N25SaAcaGc11AY.440.000006
ORF1025N25NaaCaaT11AY.450.000122
ORF1025N25DAacGac11AY.460.000104
ORF1025N25delAAC---11AY.46.60.000072
ORF1025N25SaAcaGc11AY.470.000031
ORF1025N25HAacCac11AY.470.000031
ORF1025N25RaACaGA11AY.470.000031
ORF1025N25GAAcGGc11AY.530.000288
ORF1025N25SaAcaGc11AY.540.000095
ORF1025N25NaaCaaT11AY.540.000095
ORF1025N25NaaCaaT11AY.570.000656
ORF1025N25NaaCaaT11AY.600.000938
ORF1025N25TaAcaCc11AY.610.000105
ORF1025N25delAAC---11AY.620.000436
ORF1025N25SaAcaGc11AY.650.000533
ORF1025N25delAAC---11AY.650.000533
ORF1025N25SaAcaGc11AY.670.000464
ORF1025N25NaaCaaT11AY.700.000209
ORF1025N25NaaCaaT11AY.710.000475
ORF1025N25DAacGac11AY.750.000056
ORF1025N25NaaCaaT11AY.75.10.00018
ORF1025N25TaAcaCc11AY.75.10.00018
ORF1025N25SaAcaGc11AY.840.000437
ORF1025N25HAacCac11AY.850.000427
ORF1025N25SaAcaGc11AY.900.000684
ORF1025N25SaAcaGc11AY.910.00073
ORF1025N25NaaCaaT11AY.960.002075
ORF1025N25NaaCaaT11AY.980.000079
ORF1025N25KaaCaaA11AY.98.10.000048
ORF1025N25YAacTac11AY.990.001049
ORF1025N25NaaCaaT11AY.990.001049
ORF1025N25IaAcaTc11B0.000128
ORF1025N25VAACGTG11B.10.000009
ORF1025N25DAacGac11B.10.000009
ORF1025N25del1Aac-ac11B.10.000009
ORF1025N25YAacTac11B.10.000009
ORF1025N25TaAcaCc11B.1.10.000018
ORF1025N25delAAC---11B.1.10.000018
ORF1025N25NaaCaaT11B.1.1.1390.022727
ORF1025N25DAacGac11B.1.1.2840.000107
ORF1025N25NaaCaaT11B.1.1.3060.000438
ORF1025N25NaaCaaT11B.1.1.3170.000412
ORF1025N25NaaCaaT11B.1.1.3720.000689
ORF1025N25NaaCaaT11B.1.1.4850.016667
ORF1025N25NaaCaaT11B.1.1.5190.00004
ORF1025N25YAacTac11B.1.1.5190.00004
ORF1025N25del2aACa--11B.1.1.70.000001
ORF1025N25delAAC---11B.1.1.70.000001
ORF1025N25NaaCaaT11B.1.1030.019231
ORF1025N25NaaCaaT11B.1.1280.000635
ORF1025N25SaAcaGc11B.1.1600.000031
ORF1025N25KaaCaaA11B.1.1600.000031
ORF1025N25NaaCaaT11B.1.160.280.002924
ORF1025N25KaaCaaA11B.1.1770.000013
ORF1025N25delAAC---11B.1.1770.000013
ORF1025N25KaaCaaA11B.1.177.210.000076
ORF1025N25NaaCaaT11B.1.177.60.000977
ORF1025N25XAACTGA11B.1.177.630.002703
ORF1025N25NaaCaaT11B.1.177.650.000665
ORF1025N25NaaCaaT11B.1.177.70.000165
ORF1025N25NaaCaaT11B.1.177.810.000189
ORF1025N25KaaCaaA11B.1.177.860.000183
ORF1025N25DAacGac11B.1.2340.000132
ORF1025N25NaaCaaT11B.1.2390.001221
ORF1025N25NaaCaaT11B.1.2430.00007
ORF1025N25delAAC---11B.1.258.160.001637
ORF1025N25NaaCaaT11B.1.258.20.004505
ORF1025N25NaaCaaT11B.1.258.70.001912
ORF1025N25NaaCaaT11B.1.3020.013333
ORF1025N25NaaCaaT11B.1.351.30.000876
ORF1025N25KaaCaaA11B.1.360.000146
ORF1025N25NaaCaaT11B.1.360.000146
ORF1025N25NaaCaaT11B.1.36.310.001751
ORF1025N25NaaCaaT11B.1.3690.000285
ORF1025N25NaaCaaT11B.1.3750.00082
ORF1025N25NaaCaaT11B.1.3890.001002
ORF1025N25NaaCaaT11B.1.4000.000429
ORF1025N25NaaCaaT11B.1.4090.000781
ORF1025N25NaaCaaT11B.1.4270.00005
ORF1025N25KaaCaaG11B.1.4290.000024
ORF1025N25YAacTac11B.1.4290.000024
ORF1025N25NaaCaaT11B.1.4660.023256
ORF1025N25NaaCaaT11B.1.466.20.000391
ORF1025N25NaaCaaT11B.1.4700.001404
ORF1025N25NaaCaaT11B.1.4970.000315
ORF1025N25DAacGac11B.1.5260.000024
ORF1025N25NaaCaaT11B.1.5380.008065
ORF1025N25GAAcGGc11B.1.5650.00081
ORF1025N25NaaCaaT11B.1.5760.000907
ORF1025N25delAAC---11B.1.5760.000907
ORF1025N25NaaCaaT11B.1.5800.004065
ORF1025N25NaaCaaT11B.1.5820.000491
ORF1025N25IaAcaTc11B.1.5820.000491
ORF1025N25delAAC---11B.1.5820.000491
ORF1025N25NaaCaaT11B.1.6120.002653
ORF1025N25IaACaTA11B.1.617.10.000129
ORF1025N25NaaCaaT11B.1.617.10.000129
ORF1025N25TaAcaCc11B.1.617.20.000004
ORF1025N25delAAC---11B.1.617.20.000004
ORF1025N25YAacTac11B.1.617.20.000004
ORF1025N25KaaCaaA11B.1.6210.000089
ORF1025N25NaaCaaT11B.1.6250.002353
ORF1025N25DAacGac11B.1.6280.000352
ORF1025N25NaaCaaT11B.1.6340.003425
ORF1025N25NaaCaaT11B.1.940.027027
ORF1025N25delAAC---11C.370.000116
ORF1025N25NaaCaaT11C.390.018868
ORF1025N25NaaCaaT11C.90.030303
ORF1025N25NaaCaaT11P.1.100.000269
ORF1025N25NaaCaaT11P.1.120.000484
ORF1025N25DAacGac11P.1.140.000048
ORF1025N25delAAC---11P.1.170.000162
ORF1025N25NaaCaaT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.