CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 24 & Codon = cgC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1024R24RsyncgTcgC99930.93939429627-29629

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1024R24RcgTcgC9399All0.000018
ORF1024R24RcgTcgC1717B.1.617.20.000064
ORF1024R24RcgTcgC1414B.1.1.70.000013
ORF1024R24RcgTcgC1010AY.1000.00046
ORF1024R24RcgTcgC55AY.40.000008
ORF1024R24RcgTcgC55AY.430.000022
ORF1024R24RcgTcgC44B.1.617.10.000516
ORF1024R24RcgTcgC44C.160.004242
ORF1024R24RcgTcgC33AY.440.000018
ORF1024R24RcgTcgC23B.10.000018
ORF1024R24RcgTcgC33B.1.3510.000089
ORF1024R24RcgTcgC12AY.1170.000085
ORF1024R24RcgTcgC22AY.250.000012
ORF1024R24RcgTcgC22AY.470.000062
ORF1024R24RcgTcgC11AY.1020.000027
ORF1024R24RcgTcgC11AY.1030.000006
ORF1024R24RcgTcgC11AY.1070.000466
ORF1024R24RcgTcgC11AY.1080.001103
ORF1024R24RcgTcgC11AY.1130.000142
ORF1024R24RcgTcgC11AY.120.000316
ORF1024R24RcgTcgC11AY.200.000039
ORF1024R24RcgTcgC11AY.290.000016
ORF1024R24RcgTcgC11AY.4.2.10.000149
ORF1024R24RcgTcgC11AY.46.20.000635
ORF1024R24RcgTcgC11AY.850.000427
ORF1024R24RcgTcgC11B0.000128
ORF1024R24RcgTcgC11B.1.1.390.00051
ORF1024R24RcgTcgC11B.1.1600.000031
ORF1024R24RcgTcgC11B.1.1770.000013
ORF1024R24RcgTcgC11B.1.177.210.000076
ORF1024R24RcgTcgC11B.1.177.540.000606
ORF1024R24RcgTcgC11B.1.360.000146
ORF1024R24RcgTcgC11B.1.5510.00129
ORF1024R24RcgTcgC11C.36.30.000567
ORF1024R24RcgTcgC11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.