CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 24 & Codon = cTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1024R24LnonsyncGtcTt38803880129627-29629

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1024R24LcGtcTt38803880All0.000742
ORF1024R24LcGtcTt505505B.1.1.70.000452
ORF1024R24LcGtcTt462462B.1.5160.90411
ORF1024R24LcGtcTt399399AY.370.126106
ORF1024R24LcGtcTt357357AY.430.001582
ORF1024R24LcGtcTt323323AY.40.000503
ORF1024R24LcGtcTt228228AY.1030.001416
ORF1024R24LcGtcTt110110B.1.177.210.008412
ORF1024R24LcGtcTt101101AY.30.001005
ORF1024R24LcGtcTt9595AY.440.000578
ORF1024R24LcGtcTt9494AY.120.029709
ORF1024R24LcGtcTt9393B.1.177.380.96875
ORF1024R24LcGtcTt8585B.1.617.20.00032
ORF1024R24LcGtcTt7272B.1.1.3160.066605
ORF1024R24LcGtcTt6363P.10.000993
ORF1024R24LcGtcTt5656AY.250.000337
ORF1024R24LcGtcTt5050AY.260.001416
ORF1024R24LcGtcTt4949P.1.120.023717
ORF1024R24LcGtcTt4141B.1.1.5190.001628
ORF1024R24LcGtcTt3838B.10.000348
ORF1024R24LcGtcTt3232B.1.20.000282
ORF1024R24LcGtcTt3030B.1.10.000544
ORF1024R24LcGtcTt2626AY.60.001069
ORF1024R24LcGtcTt2222AY.1190.000777
ORF1024R24LcGtcTt2020B.1.1490.068493
ORF1024R24LcGtcTt1919AY.1010.009318
ORF1024R24LcGtcTt1919AY.1020.000504
ORF1024R24LcGtcTt1919B.1.4290.000447
ORF1024R24LcGtcTt1717B.1.1.1280.120567
ORF1024R24LcGtcTt1616AY.200.000622
ORF1024R24LcGtcTt1414AY.330.000935
ORF1024R24LcGtcTt1414AY.390.000346
ORF1024R24LcGtcTt1414P.1.140.000669
ORF1024R24LcGtcTt1111AY.99.20.001014
ORF1024R24LcGtcTt1111L.20.125
ORF1024R24LcGtcTt1010AY.340.00097
ORF1024R24LcGtcTt99AY.940.003984
ORF1024R24LcGtcTt99B.1.1.2220.001836
ORF1024R24LcGtcTt88AY.46.10.008214
ORF1024R24LcGtcTt88B.1.1.3110.002865
ORF1024R24LcGtcTt88B.1.4080.02952
ORF1024R24LcGtcTt77AY.1000.000322
ORF1024R24LcGtcTt77AY.290.00011
ORF1024R24LcGtcTt77AY.50.000145
ORF1024R24LcGtcTt77B.1.3510.000208
ORF1024R24LcGtcTt77B.1.617.10.000903
ORF1024R24LcGtcTt77C.36.30.003971
ORF1024R24LcGtcTt77C.370.000812
ORF1024R24LcGtcTt66AY.980.000474
ORF1024R24LcGtcTt66B.1.5260.000141
ORF1024R24LcGtcTt66Q.80.000989
ORF1024R24LcGtcTt55AY.1170.000423
ORF1024R24LcGtcTt55AY.1200.000186
ORF1024R24LcGtcTt55AY.270.000324
ORF1024R24LcGtcTt55AY.5.40.001384
ORF1024R24LcGtcTt55AY.750.00028
ORF1024R24LcGtcTt55B.1.1.2530.012531
ORF1024R24LcGtcTt55B.1.2410.004058
ORF1024R24LcGtcTt55B.1.2580.000333
ORF1024R24LcGtcTt55B.1.5640.002129
ORF1024R24LcGtcTt55B.1.5960.000436
ORF1024R24LcGtcTt44AY.1210.000541
ORF1024R24LcGtcTt44AY.130.000644
ORF1024R24LcGtcTt44AY.230.000279
ORF1024R24LcGtcTt44AY.39.10.000158
ORF1024R24LcGtcTt44AY.4.2.10.000596
ORF1024R24LcGtcTt44AY.420.000161
ORF1024R24LcGtcTt44AY.75.10.000721
ORF1024R24LcGtcTt44B0.000511
ORF1024R24LcGtcTt44B.1.1.2140.000222
ORF1024R24LcGtcTt44B.1.1770.000053
ORF1024R24LcGtcTt44B.1.2430.000278
ORF1024R24LcGtcTt44B.1.466.20.001565
ORF1024R24LcGtcTt44B.1.5580.018265
ORF1024R24LcGtcTt33AY.1060.001005
ORF1024R24LcGtcTt33AY.360.000445
ORF1024R24LcGtcTt33AY.450.000365
ORF1024R24LcGtcTt33B.1.1.1700.003741
ORF1024R24LcGtcTt33B.1.1.3180.000905
ORF1024R24LcGtcTt33B.1.2210.000213
ORF1024R24LcGtcTt33B.1.360.000438
ORF1024R24LcGtcTt33B.1.36.370.008333
ORF1024R24LcGtcTt33B.1.4270.000151
ORF1024R24LcGtcTt33B.1.4370.0625
ORF1024R24LcGtcTt33B.1.5650.002431
ORF1024R24LcGtcTt33R.10.00027
ORF1024R24LcGtcTt22A.230.021053
ORF1024R24LcGtcTt22AY.1080.002205
ORF1024R24LcGtcTt22AY.1090.001479
ORF1024R24LcGtcTt22AY.1110.000366
ORF1024R24LcGtcTt22AY.120.2.10.000997
ORF1024R24LcGtcTt22AY.3.10.000171
ORF1024R24LcGtcTt22AY.460.000208
ORF1024R24LcGtcTt22AY.710.00095
ORF1024R24LcGtcTt22AY.740.000231
ORF1024R24LcGtcTt22AY.850.000854
ORF1024R24LcGtcTt22AY.9.10.000167
ORF1024R24LcGtcTt22AY.9.20.000073
ORF1024R24LcGtcTt22AY.920.000575
ORF1024R24LcGtcTt22B.1.1.280.000622
ORF1024R24LcGtcTt22B.1.1.330.000842
ORF1024R24LcGtcTt22B.1.1.3540.008772
ORF1024R24LcGtcTt22B.1.1600.000062
ORF1024R24LcGtcTt22B.1.177.120.000303
ORF1024R24LcGtcTt22B.1.177.830.002963
ORF1024R24LcGtcTt22B.1.3110.000549
ORF1024R24LcGtcTt22B.1.6210.000177
ORF1024R24LcGtcTt22B.1.6370.000146
ORF1024R24LcGtcTt22P.20.000373
ORF1024R24LcGtcTt110.055556
ORF1024R24LcGtcTt11A.10.000282
ORF1024R24LcGtcTt11A.20.000662
ORF1024R24LcGtcTt11A.2.20.001689
ORF1024R24LcGtcTt11A.2.5.20.001572
ORF1024R24LcGtcTt11A.23.10.000704
ORF1024R24LcGtcTt11AY.10.000396
ORF1024R24LcGtcTt11AY.100.00053
ORF1024R24LcGtcTt11AY.1050.000643
ORF1024R24LcGtcTt11AY.1100.000113
ORF1024R24LcGtcTt11AY.1130.000142
ORF1024R24LcGtcTt11AY.1180.000063
ORF1024R24LcGtcTt11AY.120.20.001285
ORF1024R24LcGtcTt11AY.170.008197
ORF1024R24LcGtcTt11AY.210.001898
ORF1024R24LcGtcTt11AY.4.20.000022
ORF1024R24LcGtcTt11AY.4.40.000409
ORF1024R24LcGtcTt11AY.410.000294
ORF1024R24LcGtcTt11AY.46.20.000635
ORF1024R24LcGtcTt11AY.46.40.000165
ORF1024R24LcGtcTt11AY.46.60.000072
ORF1024R24LcGtcTt11AY.470.000031
ORF1024R24LcGtcTt11AY.540.000095
ORF1024R24LcGtcTt11AY.570.000656
ORF1024R24LcGtcTt11AY.600.000938
ORF1024R24LcGtcTt11AY.610.000105
ORF1024R24LcGtcTt11AY.700.000209
ORF1024R24LcGtcTt11AY.90.000068
ORF1024R24LcGtcTt11AY.98.10.000048
ORF1024R24LcGtcTt11AY.990.001049
ORF1024R24LcGtcTt11AZ.20.000821
ORF1024R24LcGtcTt11B.1.1.2160.00089
ORF1024R24LcGtcTt11B.1.1.2180.007692
ORF1024R24LcGtcTt11B.1.1.2240.014286
ORF1024R24LcGtcTt11B.1.1.250.000569
ORF1024R24LcGtcTt11B.1.1.3060.000438
ORF1024R24LcGtcTt11B.1.1.3220.008772
ORF1024R24LcGtcTt11B.1.1.3890.006061
ORF1024R24LcGtcTt11B.1.1.390.00051
ORF1024R24LcGtcTt11B.1.1.4090.002833
ORF1024R24LcGtcTt11B.1.1.630.000386
ORF1024R24LcGtcTt11B.1.177.230.003236
ORF1024R24LcGtcTt11B.1.177.40.000211
ORF1024R24LcGtcTt11B.1.2100.002132
ORF1024R24LcGtcTt11B.1.2220.001692
ORF1024R24LcGtcTt11B.1.2790.000514
ORF1024R24LcGtcTt11B.1.36.100.004785
ORF1024R24LcGtcTt11B.1.3690.000285
ORF1024R24LcGtcTt11B.1.3710.001122
ORF1024R24LcGtcTt11B.1.3750.00082
ORF1024R24LcGtcTt11B.1.3820.008929
ORF1024R24LcGtcTt11B.1.3960.000706
ORF1024R24LcGtcTt11B.1.3980.002976
ORF1024R24LcGtcTt11B.1.4160.001269
ORF1024R24LcGtcTt11B.1.4430.004673
ORF1024R24LcGtcTt11B.1.4590.004082
ORF1024R24LcGtcTt11B.1.5000.052632
ORF1024R24LcGtcTt11B.1.5170.000427
ORF1024R24LcGtcTt11B.1.5320.006211
ORF1024R24LcGtcTt11B.1.5550.022222
ORF1024R24LcGtcTt11B.1.5660.019231
ORF1024R24LcGtcTt11B.1.5800.004065
ORF1024R24LcGtcTt11B.1.5950.000261
ORF1024R24LcGtcTt11B.1.6030.010638
ORF1024R24LcGtcTt11B.1.619.10.000641
ORF1024R24LcGtcTt11B.1.621.10.000506
ORF1024R24LcGtcTt11B.550.00295
ORF1024R24LcGtcTt11B.6.60.000889
ORF1024R24LcGtcTt11C.140.004329
ORF1024R24LcGtcTt11D.20.000075
ORF1024R24LcGtcTt11P.1.130.000898
ORF1024R24LcGtcTt11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.