CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 24 & Codon = Tgt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1024R24CnonsynCgtTgt75717571129627-29629

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1024R24CCgtTgt75717571All0.001448
ORF1024R24CCgtTgt18621862B.1.1.70.001667
ORF1024R24CCgtTgt541541AY.40.000842
ORF1024R24CCgtTgt492492AY.120.10.157945
ORF1024R24CCgtTgt356356AY.440.002167
ORF1024R24CCgtTgt332332P.1.40.324219
ORF1024R24CCgtTgt233233AY.430.001032
ORF1024R24CCgtTgt221221P.10.003482
ORF1024R24CCgtTgt217217AY.290.003423
ORF1024R24CCgtTgt170170B.1.6260.971429
ORF1024R24CCgtTgt141141B.1.617.20.000531
ORF1024R24CCgtTgt136136B.1.2340.017944
ORF1024R24CCgtTgt135135AY.1170.01141
ORF1024R24CCgtTgt133133B.1.20.001171
ORF1024R24CCgtTgt132132AY.230.009207
ORF1024R24CCgtTgt103103AY.260.002916
ORF1024R24CCgtTgt102102B.1.10.00185
ORF1024R24CCgtTgt100100B.1.6320.671141
ORF1024R24CCgtTgt9393AY.250.000559
ORF1024R24CCgtTgt8282B.1.3490.058613
ORF1024R24CCgtTgt7777B.1.4430.359813
ORF1024R24CCgtTgt7575AY.30.000746
ORF1024R24CCgtTgt7575B.10.000687
ORF1024R24CCgtTgt6868B.1.5260.001598
ORF1024R24CCgtTgt6666B.1.1600.002058
ORF1024R24CCgtTgt6363B.1.1770.00083
ORF1024R24CCgtTgt6161AY.390.001507
ORF1024R24CCgtTgt5656AY.1030.000348
ORF1024R24CCgtTgt5656B.1.1.3380.965517
ORF1024R24CCgtTgt5454B.1.4270.002727
ORF1024R24CCgtTgt4141B.1.1.5190.001628
ORF1024R24CCgtTgt4040AY.4.20.000868
ORF1024R24CCgtTgt3838AY.50.000785
ORF1024R24CCgtTgt3838B.1.4290.000894
ORF1024R24CCgtTgt3636B.1.1.2940.04557
ORF1024R24CCgtTgt3030AY.1210.00406
ORF1024R24CCgtTgt2929B.1.5610.011513
ORF1024R24CCgtTgt2828B.1.3960.01976
ORF1024R24CCgtTgt2626B.1.438.10.002789
ORF1024R24CCgtTgt2525B.1.5960.002178
ORF1024R24CCgtTgt2525C.370.002902
ORF1024R24CCgtTgt2424B.1.2580.001597
ORF1024R24CCgtTgt2222AY.1020.000583
ORF1024R24CCgtTgt2121B.1.1.1920.048499
ORF1024R24CCgtTgt2020AY.750.00112
ORF1024R24CCgtTgt1919AY.420.000764
ORF1024R24CCgtTgt1919AY.810.037849
ORF1024R24CCgtTgt1919P.1.170.003073
ORF1024R24CCgtTgt1818AY.470.00056
ORF1024R24CCgtTgt1818Q.10.002274
ORF1024R24CCgtTgt1717AY.200.000661
ORF1024R24CCgtTgt1616AY.1180.001002
ORF1024R24CCgtTgt1616B.1.1.3970.036036
ORF1024R24CCgtTgt1616B.1.5640.006814
ORF1024R24CCgtTgt1515B.1.4330.047923
ORF1024R24CCgtTgt1414AY.450.001704
ORF1024R24CCgtTgt1414AY.540.001335
ORF1024R24CCgtTgt1414B.1.3510.000416
ORF1024R24CCgtTgt1313AY.1190.000459
ORF1024R24CCgtTgt1313AY.140.001144
ORF1024R24CCgtTgt1313B.361
ORF1024R24CCgtTgt1212AY.4.40.00491
ORF1024R24CCgtTgt1111AY.740.001272
ORF1024R24CCgtTgt1111B.1.360.001605
ORF1024R24CCgtTgt1111R.10.00099
ORF1024R24CCgtTgt1010AY.46.40.001645
ORF1024R24CCgtTgt1010B.1.2400.002156
ORF1024R24CCgtTgt99AY.1000.000414
ORF1024R24CCgtTgt99AY.130.001449
ORF1024R24CCgtTgt99B.1.1.3070.022785
ORF1024R24CCgtTgt99B.1.1.3540.039474
ORF1024R24CCgtTgt99B.1.2210.000639
ORF1024R24CCgtTgt99B.1.2430.000626
ORF1024R24CCgtTgt88B.1.177.810.001515
ORF1024R24CCgtTgt88B.1.6210.000708
ORF1024R24CCgtTgt77AY.110.009371
ORF1024R24CCgtTgt77AY.270.000453
ORF1024R24CCgtTgt77AY.39.10.000277
ORF1024R24CCgtTgt77AY.460.000729
ORF1024R24CCgtTgt77AY.790.008475
ORF1024R24CCgtTgt77B.1.2320.003761
ORF1024R24CCgtTgt77B.1.36.290.003621
ORF1024R24CCgtTgt77B.1.617.10.000903
ORF1024R24CCgtTgt66AY.1200.000223
ORF1024R24CCgtTgt66AY.650.003198
ORF1024R24CCgtTgt66B.1.1.2970.013423
ORF1024R24CCgtTgt66B.1.1.4860.009464
ORF1024R24CCgtTgt66B.1.3690.001711
ORF1024R24CCgtTgt66B.1.5250.000679
ORF1024R24CCgtTgt66B.1.6270.012121
ORF1024R24CCgtTgt66C.350.004644
ORF1024R24CCgtTgt66D.20.00045
ORF1024R24CCgtTgt66P.1.10.001906
ORF1024R24CCgtTgt66P.1.140.000287
ORF1024R24CCgtTgt55AY.1010.002452
ORF1024R24CCgtTgt55AY.1130.000712
ORF1024R24CCgtTgt55AY.29.10.001103
ORF1024R24CCgtTgt55AY.610.000524
ORF1024R24CCgtTgt55AY.640.002976
ORF1024R24CCgtTgt55AY.980.000395
ORF1024R24CCgtTgt55AY.99.20.000461
ORF1024R24CCgtTgt55B.1.1.2140.000277
ORF1024R24CCgtTgt55B.1.5510.006452
ORF1024R24CCgtTgt55B.1.5950.001305
ORF1024R24CCgtTgt55B.1.6370.000365
ORF1024R24CCgtTgt55P.20.000933
ORF1024R24CCgtTgt55Q.30.000725
ORF1024R24CCgtTgt44AY.3.10.000341
ORF1024R24CCgtTgt44AY.360.000593
ORF1024R24CCgtTgt44AY.530.00115
ORF1024R24CCgtTgt44AY.90.00027
ORF1024R24CCgtTgt44B.1.1.3060.001754
ORF1024R24CCgtTgt44B.1.1.370.000771
ORF1024R24CCgtTgt44B.1.1.4120.030534
ORF1024R24CCgtTgt44B.1.177.440.002076
ORF1024R24CCgtTgt44B.1.2100.008529
ORF1024R24CCgtTgt44B.1.258.170.000416
ORF1024R24CCgtTgt44B.1.36.370.011111
ORF1024R24CCgtTgt44B.1.4700.005618
ORF1024R24CCgtTgt44B.1.6230.002146
ORF1024R24CCgtTgt44B.1.6280.001409
ORF1024R24CCgtTgt44C.360.003643
ORF1024R24CCgtTgt44P.1.150.000929
ORF1024R24CCgtTgt33A0.001161
ORF1024R24CCgtTgt33A.23.10.002113
ORF1024R24CCgtTgt33AY.1050.001929
ORF1024R24CCgtTgt33AY.1070.001398
ORF1024R24CCgtTgt33AY.160.001139
ORF1024R24CCgtTgt33AY.310.055556
ORF1024R24CCgtTgt33AY.330.0002
ORF1024R24CCgtTgt33AY.370.000948
ORF1024R24CCgtTgt33AY.550.002752
ORF1024R24CCgtTgt33AY.75.10.000541
ORF1024R24CCgtTgt33AY.9.10.000251
ORF1024R24CCgtTgt33B0.000383
ORF1024R24CCgtTgt33B.1.1.390.001529
ORF1024R24CCgtTgt33B.1.1.4340.001046
ORF1024R24CCgtTgt33B.1.1.630.001157
ORF1024R24CCgtTgt33B.1.2060.002447
ORF1024R24CCgtTgt33B.1.2130.044776
ORF1024R24CCgtTgt33B.1.4000.001287
ORF1024R24CCgtTgt33B.1.5750.00091
ORF1024R24CCgtTgt33B.1.930.002801
ORF1024R24CCgtTgt33P.1.20.003468
ORF1024R24CCgtTgt33Q.80.000495
ORF1024R24CCgtTgt22AY.1090.001479
ORF1024R24CCgtTgt22AY.1160.000574
ORF1024R24CCgtTgt22AY.300.000791
ORF1024R24CCgtTgt22AY.4.10.001475
ORF1024R24CCgtTgt22AY.46.20.001271
ORF1024R24CCgtTgt22AY.46.50.000397
ORF1024R24CCgtTgt22AY.570.001312
ORF1024R24CCgtTgt22AY.60.000082
ORF1024R24CCgtTgt22AY.70.000392
ORF1024R24CCgtTgt22AY.7.10.000225
ORF1024R24CCgtTgt22AY.7.20.001119
ORF1024R24CCgtTgt22AY.730.001331
ORF1024R24CCgtTgt22AY.880.001768
ORF1024R24CCgtTgt22AY.9.20.000073
ORF1024R24CCgtTgt22AY.98.10.000097
ORF1024R24CCgtTgt22AY.990.002099
ORF1024R24CCgtTgt22B.1.1.10.000653
ORF1024R24CCgtTgt22B.1.1.1700.002494
ORF1024R24CCgtTgt22B.1.1.2070.002364
ORF1024R24CCgtTgt22B.1.1.3170.000823
ORF1024R24CCgtTgt22B.1.1.3590.055556
ORF1024R24CCgtTgt22B.1.1.500.001358
ORF1024R24CCgtTgt22B.1.1.5260.007092
ORF1024R24CCgtTgt22B.1.1460.008475
ORF1024R24CCgtTgt22B.1.177.190.002861
ORF1024R24CCgtTgt22B.1.177.50.002484
ORF1024R24CCgtTgt22B.1.177.580.002663
ORF1024R24CCgtTgt22B.1.258.30.00335
ORF1024R24CCgtTgt22B.1.3060.011429
ORF1024R24CCgtTgt22B.1.3620.003082
ORF1024R24CCgtTgt22B.1.3720.021978
ORF1024R24CCgtTgt22B.1.4040.002604
ORF1024R24CCgtTgt22B.1.466.20.000782
ORF1024R24CCgtTgt22B.1.5650.001621
ORF1024R24CCgtTgt22B.1.5680.002222
ORF1024R24CCgtTgt22B.1.5820.000981
ORF1024R24CCgtTgt22B.1.6190.001742
ORF1024R24CCgtTgt22B.1.621.10.001012
ORF1024R24CCgtTgt22B.40.004415
ORF1024R24CCgtTgt22C.37.10.005236
ORF1024R24CCgtTgt22P.1.100.000539
ORF1024R24CCgtTgt22P.1.120.000968
ORF1024R24CCgtTgt22Q.70.002222
ORF1024R24CCgtTgt110.055556
ORF1024R24CCgtTgt11A.10.000282
ORF1024R24CCgtTgt11A.190.009434
ORF1024R24CCgtTgt11A.2.20.001689
ORF1024R24CCgtTgt11A.270.001656
ORF1024R24CCgtTgt11AE.80.000489
ORF1024R24CCgtTgt11AH.30.003802
ORF1024R24CCgtTgt11AY.10.000396
ORF1024R24CCgtTgt11AY.1040.001984
ORF1024R24CCgtTgt11AY.1080.001103
ORF1024R24CCgtTgt11AY.1100.000113
ORF1024R24CCgtTgt11AY.1140.000231
ORF1024R24CCgtTgt11AY.16.10.00047
ORF1024R24CCgtTgt11AY.20.000356
ORF1024R24CCgtTgt11AY.240.000431
ORF1024R24CCgtTgt11AY.340.000097
ORF1024R24CCgtTgt11AY.34.10.00051
ORF1024R24CCgtTgt11AY.4.50.000107
ORF1024R24CCgtTgt11AY.400.000964
ORF1024R24CCgtTgt11AY.46.60.000072
ORF1024R24CCgtTgt11AY.480.000465
ORF1024R24CCgtTgt11AY.520.000814
ORF1024R24CCgtTgt11AY.560.001605
ORF1024R24CCgtTgt11AY.680.000274
ORF1024R24CCgtTgt11AY.700.000209
ORF1024R24CCgtTgt11AY.780.001541
ORF1024R24CCgtTgt11AY.840.000437
ORF1024R24CCgtTgt11AY.900.000684
ORF1024R24CCgtTgt11AY.930.000273
ORF1024R24CCgtTgt11B.1.1.100.001115
ORF1024R24CCgtTgt11B.1.1.1890.001513
ORF1024R24CCgtTgt11B.1.1.2100.005714
ORF1024R24CCgtTgt11B.1.1.2220.000204
ORF1024R24CCgtTgt11B.1.1.2300.009174
ORF1024R24CCgtTgt11B.1.1.2310.003096
ORF1024R24CCgtTgt11B.1.1.2410.00207
ORF1024R24CCgtTgt11B.1.1.2530.002506
ORF1024R24CCgtTgt11B.1.1.2770.000759
ORF1024R24CCgtTgt11B.1.1.280.000311
ORF1024R24CCgtTgt11B.1.1.2800.003086
ORF1024R24CCgtTgt11B.1.1.2840.000107
ORF1024R24CCgtTgt11B.1.1.2980.000862
ORF1024R24CCgtTgt11B.1.1.3180.000302
ORF1024R24CCgtTgt11B.1.1.330.000421
ORF1024R24CCgtTgt11B.1.1.3360.016667
ORF1024R24CCgtTgt11B.1.1.3630.005988
ORF1024R24CCgtTgt11B.1.1.3690.000446
ORF1024R24CCgtTgt11B.1.1.3770.001381
ORF1024R24CCgtTgt11B.1.1.4220.045455
ORF1024R24CCgtTgt11B.1.1.4320.001266
ORF1024R24CCgtTgt11B.1.1.4560.055556
ORF1024R24CCgtTgt11B.1.1.470.005348
ORF1024R24CCgtTgt11B.1.1.5250.005464
ORF1024R24CCgtTgt11B.1.1.540.003021
ORF1024R24CCgtTgt11B.1.1.610.008772
ORF1024R24CCgtTgt11B.1.1060.03125
ORF1024R24CCgtTgt11B.1.110.30.000718
ORF1024R24CCgtTgt11B.1.1390.000733
ORF1024R24CCgtTgt11B.1.1470.000756
ORF1024R24CCgtTgt11B.1.1530.018868
ORF1024R24CCgtTgt11B.1.160.160.000929
ORF1024R24CCgtTgt11B.1.160.300.002976
ORF1024R24CCgtTgt11B.1.177.100.000878
ORF1024R24CCgtTgt11B.1.177.210.000076
ORF1024R24CCgtTgt11B.1.177.420.000894
ORF1024R24CCgtTgt11B.1.177.560.000668
ORF1024R24CCgtTgt11B.1.177.600.000218
ORF1024R24CCgtTgt11B.1.177.730.000566
ORF1024R24CCgtTgt11B.1.177.80.000752
ORF1024R24CCgtTgt11B.1.258.110.000396
ORF1024R24CCgtTgt11B.1.258.210.007752
ORF1024R24CCgtTgt11B.1.2600.003344
ORF1024R24CCgtTgt11B.1.2650.001271
ORF1024R24CCgtTgt11B.1.2790.000514
ORF1024R24CCgtTgt11B.1.2890.00266
ORF1024R24CCgtTgt11B.1.3110.000275
ORF1024R24CCgtTgt11B.1.3240.001605
ORF1024R24CCgtTgt11B.1.3360.002439
ORF1024R24CCgtTgt11B.1.3380.008621
ORF1024R24CCgtTgt11B.1.351.30.000876
ORF1024R24CCgtTgt11B.1.36.360.000602
ORF1024R24CCgtTgt11B.1.36.70.004
ORF1024R24CCgtTgt11B.1.3750.00082
ORF1024R24CCgtTgt11B.1.3770.004566
ORF1024R24CCgtTgt11B.1.3910.001127
ORF1024R24CCgtTgt11B.1.400.10.015152
ORF1024R24CCgtTgt11B.1.4080.00369
ORF1024R24CCgtTgt11B.1.4090.000781
ORF1024R24CCgtTgt11B.1.4150.014286
ORF1024R24CCgtTgt11B.1.4220.000812
ORF1024R24CCgtTgt11B.1.4380.006536
ORF1024R24CCgtTgt11B.1.4560.003268
ORF1024R24CCgtTgt11B.1.5030.002488
ORF1024R24CCgtTgt11B.1.5240.001406
ORF1024R24CCgtTgt11B.1.5500.013699
ORF1024R24CCgtTgt11B.1.575.10.002439
ORF1024R24CCgtTgt11B.1.5870.001898
ORF1024R24CCgtTgt11B.1.6010.030303
ORF1024R24CCgtTgt11B.1.6250.002353
ORF1024R24CCgtTgt11B.1.90.006173
ORF1024R24CCgtTgt11N.40.004255
ORF1024R24CCgtTgt11P.30.001595
ORF1024R24CCgtTgt11Q.40.000455
ORF1024R24CCgtTgt11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.