CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 24

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1024R24CnonsynCgtTgt75717571129627-29629
ORF1024R24LnonsyncGtcTt38803880129627-29629
ORF1024R24HnonsyncGtcAt20582058129627-29629
ORF1024R24PnonsyncGtcCt235235129627-29629
ORF1024R24RsyncgTcgC99930.93939429627-29629
ORF1024R24RsyncgTcgA9930.03030329627-29629
ORF1024R24RsyncgTcgG9930.03030329627-29629
ORF1024R24SnonsynCgtAgt98970.98979629627-29629
ORF1024R24SnonsynCGTTCC9810.010204129627-29629
ORF1024R24deldelCGT---3131129627-29629
ORF1024R24GnonsynCgtGgt2222129627-29629
ORF1024R24FnonsynCGtTTt640.66666729627-29629
ORF1024R24FnonsynCGTTTC620.33333329627-29629
ORF1024R24del1delCgt-gt44129627-29629
ORF1024R24VnonsynCGTGTA44129627-29629
ORF1024R24WnonsynCgTTgG22129627-29629
ORF1024R24InonsynCGTATA11129627-29629
ORF1024R24QnonsyncGTcAA11129627-29629
ORF1024R24NnonsynCGTAAC11129627-29629
ORF1024R24del2delcGTc--11129627-29629

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1024R24CCgtTgt75717571All0.001448
ORF1024R24LcGtcTt38803880All0.000742
ORF1024R24HcGtcAt20582058All0.000394
ORF1024R24CCgtTgt18621862B.1.1.70.001667
ORF1024R24HcGtcAt802802AY.430.003553
ORF1024R24CCgtTgt541541AY.40.000842
ORF1024R24LcGtcTt505505B.1.1.70.000452
ORF1024R24CCgtTgt492492AY.120.10.157945
ORF1024R24LcGtcTt462462B.1.5160.90411
ORF1024R24HcGtcAt412412AY.1060.137977
ORF1024R24LcGtcTt399399AY.370.126106
ORF1024R24LcGtcTt357357AY.430.001582
ORF1024R24CCgtTgt356356AY.440.002167
ORF1024R24CCgtTgt332332P.1.40.324219
ORF1024R24LcGtcTt323323AY.40.000503
ORF1024R24PcGtcCt235235All0.000045
ORF1024R24CCgtTgt233233AY.430.001032
ORF1024R24LcGtcTt228228AY.1030.001416
ORF1024R24CCgtTgt221221P.10.003482
ORF1024R24CCgtTgt217217AY.290.003423
ORF1024R24HcGtcAt173173AY.1030.001074
ORF1024R24CCgtTgt170170B.1.6260.971429
ORF1024R24CCgtTgt141141B.1.617.20.000531
ORF1024R24CCgtTgt136136B.1.2340.017944
ORF1024R24CCgtTgt135135AY.1170.01141
ORF1024R24CCgtTgt133133B.1.20.001171
ORF1024R24CCgtTgt132132AY.230.009207
ORF1024R24LcGtcTt110110B.1.177.210.008412
ORF1024R24CCgtTgt103103AY.260.002916
ORF1024R24CCgtTgt102102B.1.10.00185
ORF1024R24LcGtcTt101101AY.30.001005
ORF1024R24CCgtTgt100100B.1.6320.671141
ORF1024R24RcgTcgC9399All0.000018
ORF1024R24RcgTcgG399All0.000001
ORF1024R24RcgTcgA399All0.000001
ORF1024R24SCgtAgt9798All0.000019
ORF1024R24SCGTTCC198All0
ORF1024R24LcGtcTt9595AY.440.000578
ORF1024R24LcGtcTt9494AY.120.029709
ORF1024R24CCgtTgt9393AY.250.000559
ORF1024R24LcGtcTt9393B.1.177.380.96875
ORF1024R24LcGtcTt8585B.1.617.20.00032
ORF1024R24CCgtTgt8282B.1.3490.058613
ORF1024R24PcGtcCt8181B.1.617.20.000305
ORF1024R24CCgtTgt7777B.1.4430.359813
ORF1024R24CCgtTgt7575AY.30.000746
ORF1024R24CCgtTgt7575B.10.000687
ORF1024R24LcGtcTt7272B.1.1.3160.066605
ORF1024R24HcGtcAt7070B.1.617.20.000264
ORF1024R24PcGtcCt6868AY.1020.001803
ORF1024R24CCgtTgt6868B.1.5260.001598
ORF1024R24CCgtTgt6666B.1.1600.002058
ORF1024R24HcGtcAt6565B.1.1.70.000058
ORF1024R24CCgtTgt6363B.1.1770.00083
ORF1024R24LcGtcTt6363P.10.000993
ORF1024R24CCgtTgt6161AY.390.001507
ORF1024R24HcGtcAt5959AY.40.000092
ORF1024R24CCgtTgt5656AY.1030.000348
ORF1024R24LcGtcTt5656AY.250.000337
ORF1024R24CCgtTgt5656B.1.1.3380.965517
ORF1024R24CCgtTgt5454B.1.4270.002727
ORF1024R24LcGtcTt5050AY.260.001416
ORF1024R24LcGtcTt4949P.1.120.023717
ORF1024R24CCgtTgt4141B.1.1.5190.001628
ORF1024R24LcGtcTt4141B.1.1.5190.001628
ORF1024R24HcGtcAt4141B.1.2580.002728
ORF1024R24CCgtTgt4040AY.4.20.000868
ORF1024R24CCgtTgt3838AY.50.000785
ORF1024R24LcGtcTt3838B.10.000348
ORF1024R24CCgtTgt3838B.1.4290.000894
ORF1024R24HcGtcAt3737B.1.36.310.064799
ORF1024R24CCgtTgt3636B.1.1.2940.04557
ORF1024R24HcGtcAt3535AY.250.000211
ORF1024R24LcGtcTt3232B.1.20.000282
ORF1024R24delCGT---3131All0.000006
ORF1024R24CCgtTgt3030AY.1210.00406
ORF1024R24LcGtcTt3030B.1.10.000544
ORF1024R24CCgtTgt2929B.1.5610.011513
ORF1024R24CCgtTgt2828B.1.3960.01976
ORF1024R24HcGtcAt2727AY.440.000164
ORF1024R24LcGtcTt2626AY.60.001069
ORF1024R24CCgtTgt2626B.1.438.10.002789
ORF1024R24CCgtTgt2525B.1.5960.002178
ORF1024R24CCgtTgt2525C.370.002902
ORF1024R24SCgtAgt2424AY.430.000106
ORF1024R24CCgtTgt2424B.1.2580.001597
ORF1024R24GCgtGgt2222All0.000004
ORF1024R24CCgtTgt2222AY.1020.000583
ORF1024R24LcGtcTt2222AY.1190.000777
ORF1024R24CCgtTgt2121B.1.1.1920.048499
ORF1024R24HcGtcAt2020AY.30.000199
ORF1024R24CCgtTgt2020AY.750.00112
ORF1024R24LcGtcTt2020B.1.1490.068493
ORF1024R24LcGtcTt1919AY.1010.009318
ORF1024R24LcGtcTt1919AY.1020.000504
ORF1024R24HcGtcAt1919AY.390.00047
ORF1024R24CCgtTgt1919AY.420.000764
ORF1024R24CCgtTgt1919AY.810.037849
ORF1024R24HcGtcAt1919B.1.20.000167
ORF1024R24LcGtcTt1919B.1.4290.000447
ORF1024R24CCgtTgt1919P.1.170.003073
ORF1024R24HcGtcAt1818AY.1020.000477
ORF1024R24HcGtcAt1818AY.340.001745
ORF1024R24CCgtTgt1818AY.470.00056
ORF1024R24CCgtTgt1818Q.10.002274
ORF1024R24CCgtTgt1717AY.200.000661
ORF1024R24LcGtcTt1717B.1.1.1280.120567
ORF1024R24RcgTcgC1717B.1.617.20.000064
ORF1024R24CCgtTgt1616AY.1180.001002
ORF1024R24LcGtcTt1616AY.200.000622
ORF1024R24CCgtTgt1616B.1.1.3970.036036
ORF1024R24CCgtTgt1616B.1.5640.006814
ORF1024R24HcGtcAt1616B.1.6370.001169
ORF1024R24PcGtcCt1515B.10.000137
ORF1024R24CCgtTgt1515B.1.4330.047923
ORF1024R24HcGtcAt1414AY.290.000221
ORF1024R24LcGtcTt1414AY.330.000935
ORF1024R24LcGtcTt1414AY.390.000346
ORF1024R24CCgtTgt1414AY.450.001704
ORF1024R24CCgtTgt1414AY.540.001335
ORF1024R24SCgtAgt1414B.1.1.70.000013
ORF1024R24RcgTcgC1414B.1.1.70.000013
ORF1024R24CCgtTgt1414B.1.3510.000416
ORF1024R24LcGtcTt1414P.1.140.000669
ORF1024R24HcGtcAt1313AY.1000.000598
ORF1024R24CCgtTgt1313AY.1190.000459
ORF1024R24CCgtTgt1313AY.140.001144
ORF1024R24SCgtAgt1313AY.250.000078
ORF1024R24GCgtGgt1313AY.3.10.001108
ORF1024R24CCgtTgt1313B.361
ORF1024R24CCgtTgt1212AY.4.40.00491
ORF1024R24PcGtcCt1212AY.430.000053
ORF1024R24HcGtcAt1111AY.60.000452
ORF1024R24CCgtTgt1111AY.740.001272
ORF1024R24LcGtcTt1111AY.99.20.001014
ORF1024R24PcGtcCt1111B.1.1.2530.027569
ORF1024R24CCgtTgt1111B.1.360.001605
ORF1024R24LcGtcTt1111L.20.125
ORF1024R24CCgtTgt1111R.10.00099
ORF1024R24RcgTcgC1010AY.1000.00046
ORF1024R24LcGtcTt1010AY.340.00097
ORF1024R24CCgtTgt1010AY.46.40.001645
ORF1024R24CCgtTgt1010B.1.2400.002156
ORF1024R24CCgtTgt99AY.1000.000414
ORF1024R24HcGtcAt99AY.1200.000335
ORF1024R24CCgtTgt99AY.130.001449
ORF1024R24LcGtcTt99AY.940.003984
ORF1024R24HcGtcAt99B.10.000082
ORF1024R24LcGtcTt99B.1.1.2220.001836
ORF1024R24CCgtTgt99B.1.1.3070.022785
ORF1024R24CCgtTgt99B.1.1.3540.039474
ORF1024R24CCgtTgt99B.1.2210.000639
ORF1024R24CCgtTgt99B.1.2430.000626
ORF1024R24HcGtcAt99B.1.5870.017078
ORF1024R24LcGtcTt88AY.46.10.008214
ORF1024R24HcGtcAt88AY.50.000165
ORF1024R24LcGtcTt88B.1.1.3110.002865
ORF1024R24CCgtTgt88B.1.177.810.001515
ORF1024R24LcGtcTt88B.1.4080.02952
ORF1024R24CCgtTgt88B.1.6210.000708
ORF1024R24LcGtcTt77AY.1000.000322
ORF1024R24CCgtTgt77AY.110.009371
ORF1024R24CCgtTgt77AY.270.000453
ORF1024R24LcGtcTt77AY.290.00011
ORF1024R24HcGtcAt77AY.360.001037
ORF1024R24CCgtTgt77AY.39.10.000277
ORF1024R24CCgtTgt77AY.460.000729
ORF1024R24LcGtcTt77AY.50.000145
ORF1024R24CCgtTgt77AY.790.008475
ORF1024R24CCgtTgt77B.1.2320.003761
ORF1024R24LcGtcTt77B.1.3510.000208
ORF1024R24CCgtTgt77B.1.36.290.003621
ORF1024R24CCgtTgt77B.1.617.10.000903
ORF1024R24LcGtcTt77B.1.617.10.000903
ORF1024R24LcGtcTt77C.36.30.003971
ORF1024R24LcGtcTt77C.370.000812
ORF1024R24FCGtTTt46All0.000001
ORF1024R24FCGTTTC26All0
ORF1024R24HcGtcAt66AY.1180.000376
ORF1024R24CCgtTgt66AY.1200.000223
ORF1024R24PcGtcCt66AY.40.000009
ORF1024R24CCgtTgt66AY.650.003198
ORF1024R24LcGtcTt66AY.980.000474
ORF1024R24CCgtTgt66B.1.1.2970.013423
ORF1024R24CCgtTgt66B.1.1.4860.009464
ORF1024R24CCgtTgt66B.1.3690.001711
ORF1024R24CCgtTgt66B.1.5250.000679
ORF1024R24LcGtcTt66B.1.5260.000141
ORF1024R24CCgtTgt66B.1.6270.012121
ORF1024R24CCgtTgt66C.350.004644
ORF1024R24CCgtTgt66D.20.00045
ORF1024R24CCgtTgt66P.1.10.001906
ORF1024R24CCgtTgt66P.1.140.000287
ORF1024R24LcGtcTt66Q.80.000989
ORF1024R24CCgtTgt55AY.1010.002452
ORF1024R24CCgtTgt55AY.1130.000712
ORF1024R24LcGtcTt55AY.1170.000423
ORF1024R24LcGtcTt55AY.1200.000186
ORF1024R24HcGtcAt55AY.160.001898
ORF1024R24PcGtcCt55AY.250.00003
ORF1024R24HcGtcAt55AY.260.000142
ORF1024R24LcGtcTt55AY.270.000324
ORF1024R24CCgtTgt55AY.29.10.001103
ORF1024R24RcgTcgC55AY.40.000008
ORF1024R24HcGtcAt55AY.420.000201
ORF1024R24RcgTcgC55AY.430.000022
ORF1024R24HcGtcAt55AY.470.000156
ORF1024R24PcGtcCt55AY.50.000103
ORF1024R24SCgtAgt55AY.50.000103
ORF1024R24LcGtcTt55AY.5.40.001384
ORF1024R24CCgtTgt55AY.610.000524
ORF1024R24CCgtTgt55AY.640.002976
ORF1024R24LcGtcTt55AY.750.00028
ORF1024R24CCgtTgt55AY.980.000395
ORF1024R24HcGtcAt55AY.98.10.000242
ORF1024R24CCgtTgt55AY.99.20.000461
ORF1024R24SCgtAgt55B.10.000046
ORF1024R24CCgtTgt55B.1.1.2140.000277
ORF1024R24LcGtcTt55B.1.1.2530.012531
ORF1024R24HcGtcAt55B.1.1770.000066
ORF1024R24LcGtcTt55B.1.2410.004058
ORF1024R24LcGtcTt55B.1.2580.000333
ORF1024R24CCgtTgt55B.1.5510.006452
ORF1024R24LcGtcTt55B.1.5640.002129
ORF1024R24CCgtTgt55B.1.5950.001305
ORF1024R24LcGtcTt55B.1.5960.000436
ORF1024R24CCgtTgt55B.1.6370.000365
ORF1024R24CCgtTgt55P.20.000933
ORF1024R24CCgtTgt55Q.30.000725
ORF1024R24del1Cgt-gt44All0.000001
ORF1024R24VCGTGTA44All0.000001
ORF1024R24LcGtcTt44AY.1210.000541
ORF1024R24LcGtcTt44AY.130.000644
ORF1024R24LcGtcTt44AY.230.000279
ORF1024R24CCgtTgt44AY.3.10.000341
ORF1024R24CCgtTgt44AY.360.000593
ORF1024R24LcGtcTt44AY.39.10.000158
ORF1024R24LcGtcTt44AY.4.2.10.000596
ORF1024R24HcGtcAt44AY.4.40.001637
ORF1024R24LcGtcTt44AY.420.000161
ORF1024R24CCgtTgt44AY.530.00115
ORF1024R24HcGtcAt44AY.610.000419
ORF1024R24HcGtcAt44AY.630.001547
ORF1024R24LcGtcTt44AY.75.10.000721
ORF1024R24CCgtTgt44AY.90.00027
ORF1024R24HcGtcAt44AY.980.000316
ORF1024R24LcGtcTt44B0.000511
ORF1024R24HcGtcAt44B.1.10.000073
ORF1024R24LcGtcTt44B.1.1.2140.000222
ORF1024R24CCgtTgt44B.1.1.3060.001754
ORF1024R24CCgtTgt44B.1.1.370.000771
ORF1024R24CCgtTgt44B.1.1.4120.030534
ORF1024R24LcGtcTt44B.1.1770.000053
ORF1024R24CCgtTgt44B.1.177.440.002076
ORF1024R24delCGT---44B.1.20.000035
ORF1024R24CCgtTgt44B.1.2100.008529
ORF1024R24LcGtcTt44B.1.2430.000278
ORF1024R24CCgtTgt44B.1.258.170.000416
ORF1024R24HcGtcAt44B.1.3510.000119
ORF1024R24CCgtTgt44B.1.36.370.011111
ORF1024R24SCgtAgt44B.1.4110.014815
ORF1024R24LcGtcTt44B.1.466.20.001565
ORF1024R24CCgtTgt44B.1.4700.005618
ORF1024R24LcGtcTt44B.1.5580.018265
ORF1024R24HcGtcAt44B.1.5600.018519
ORF1024R24RcgTcgC44B.1.617.10.000516
ORF1024R24SCgtAgt44B.1.617.20.000015
ORF1024R24CCgtTgt44B.1.6230.002146
ORF1024R24CCgtTgt44B.1.6280.001409
ORF1024R24RcgTcgC44C.160.004242
ORF1024R24CCgtTgt44C.360.003643
ORF1024R24CCgtTgt44P.1.150.000929
ORF1024R24CCgtTgt33A0.001161
ORF1024R24CCgtTgt33A.23.10.002113
ORF1024R24CCgtTgt33AY.1050.001929
ORF1024R24LcGtcTt33AY.1060.001005
ORF1024R24CCgtTgt33AY.1070.001398
ORF1024R24HcGtcAt33AY.1140.000693
ORF1024R24HcGtcAt33AY.1190.000106
ORF1024R24CCgtTgt33AY.160.001139
ORF1024R24CCgtTgt33AY.310.055556
ORF1024R24CCgtTgt33AY.330.0002
ORF1024R24LcGtcTt33AY.360.000445
ORF1024R24CCgtTgt33AY.370.000948
ORF1024R24PcGtcCt33AY.390.000074
ORF1024R24SCgtAgt33AY.40.000005
ORF1024R24PcGtcCt33AY.440.000018
ORF1024R24RcgTcgC33AY.440.000018
ORF1024R24LcGtcTt33AY.450.000365
ORF1024R24PcGtcCt33AY.460.000312
ORF1024R24CCgtTgt33AY.550.002752
ORF1024R24CCgtTgt33AY.75.10.000541
ORF1024R24CCgtTgt33AY.9.10.000251
ORF1024R24CCgtTgt33B0.000383
ORF1024R24delCGT---33B.10.000027
ORF1024R24RcgTcgC23B.10.000018
ORF1024R24RcgTcgG13B.10.000009
ORF1024R24LcGtcTt33B.1.1.1700.003741
ORF1024R24LcGtcTt33B.1.1.3180.000905
ORF1024R24CCgtTgt33B.1.1.390.001529
ORF1024R24CCgtTgt33B.1.1.4340.001046
ORF1024R24CCgtTgt33B.1.1.630.001157
ORF1024R24SCgtAgt33B.1.20.000026
ORF1024R24CCgtTgt33B.1.2060.002447
ORF1024R24CCgtTgt33B.1.2130.044776
ORF1024R24LcGtcTt33B.1.2210.000213
ORF1024R24RcgTcgC33B.1.3510.000089
ORF1024R24LcGtcTt33B.1.360.000438
ORF1024R24LcGtcTt33B.1.36.370.008333
ORF1024R24CCgtTgt33B.1.4000.001287
ORF1024R24LcGtcTt33B.1.4270.000151
ORF1024R24PcGtcCt33B.1.4270.000151
ORF1024R24LcGtcTt33B.1.4370.0625
ORF1024R24LcGtcTt33B.1.5650.002431
ORF1024R24CCgtTgt33B.1.5750.00091
ORF1024R24HcGtcAt33B.1.5770.002062
ORF1024R24HcGtcAt33B.1.5950.000783
ORF1024R24HcGtcAt33B.1.6090.001438
ORF1024R24CCgtTgt33B.1.930.002801
ORF1024R24HcGtcAt33P.10.000047
ORF1024R24CCgtTgt33P.1.20.003468
ORF1024R24CCgtTgt33Q.80.000495
ORF1024R24GCgtGgt33R.10.00027
ORF1024R24LcGtcTt33R.10.00027
ORF1024R24LcGtcTt22A.230.021053
ORF1024R24HcGtcAt22A.23.10.001408
ORF1024R24WCgTTgG22All0
ORF1024R24LcGtcTt22AY.1080.002205
ORF1024R24LcGtcTt22AY.1090.001479
ORF1024R24CCgtTgt22AY.1090.001479
ORF1024R24LcGtcTt22AY.1110.000366
ORF1024R24CCgtTgt22AY.1160.000574
ORF1024R24PcGtcCt22AY.1170.000169
ORF1024R24RcgTcgG12AY.1170.000085
ORF1024R24RcgTcgC12AY.1170.000085
ORF1024R24LcGtcTt22AY.120.2.10.000997
ORF1024R24SCgtAgt22AY.1210.000271
ORF1024R24HcGtcAt22AY.140.000176
ORF1024R24PcGtcCt22AY.200.000078
ORF1024R24HcGtcAt22AY.200.000078
ORF1024R24PcGtcCt22AY.230.000139
ORF1024R24HcGtcAt22AY.230.000139
ORF1024R24RcgTcgC22AY.250.000012
ORF1024R24delCGT---22AY.250.000012
ORF1024R24PcGtcCt22AY.30.00002
ORF1024R24LcGtcTt22AY.3.10.000171
ORF1024R24CCgtTgt22AY.300.000791
ORF1024R24delCGT---22AY.39.10.000079
ORF1024R24CCgtTgt22AY.4.10.001475
ORF1024R24HcGtcAt22AY.4.20.000043
ORF1024R24delCGT---22AY.440.000012
ORF1024R24LcGtcTt22AY.460.000208
ORF1024R24CCgtTgt22AY.46.20.001271
ORF1024R24CCgtTgt22AY.46.50.000397
ORF1024R24SCgtAgt22AY.470.000062
ORF1024R24RcgTcgC22AY.470.000062
ORF1024R24CCgtTgt22AY.570.001312
ORF1024R24CCgtTgt22AY.60.000082
ORF1024R24CCgtTgt22AY.70.000392
ORF1024R24CCgtTgt22AY.7.10.000225
ORF1024R24CCgtTgt22AY.7.20.001119
ORF1024R24HcGtcAt22AY.700.000417
ORF1024R24LcGtcTt22AY.710.00095
ORF1024R24CCgtTgt22AY.730.001331
ORF1024R24LcGtcTt22AY.740.000231
ORF1024R24HcGtcAt22AY.800.002257
ORF1024R24LcGtcTt22AY.850.000854
ORF1024R24CCgtTgt22AY.880.001768
ORF1024R24LcGtcTt22AY.9.10.000167
ORF1024R24CCgtTgt22AY.9.20.000073
ORF1024R24LcGtcTt22AY.9.20.000073
ORF1024R24LcGtcTt22AY.920.000575
ORF1024R24CCgtTgt22AY.98.10.000097
ORF1024R24CCgtTgt22AY.990.002099
ORF1024R24VCGTGTA22B.1.10.000036
ORF1024R24CCgtTgt22B.1.1.10.000653
ORF1024R24CCgtTgt22B.1.1.1700.002494
ORF1024R24CCgtTgt22B.1.1.2070.002364
ORF1024R24HcGtcAt22B.1.1.2160.001781
ORF1024R24LcGtcTt22B.1.1.280.000622
ORF1024R24CCgtTgt22B.1.1.3170.000823
ORF1024R24LcGtcTt22B.1.1.330.000842
ORF1024R24HcGtcAt22B.1.1.3360.033333
ORF1024R24LcGtcTt22B.1.1.3540.008772
ORF1024R24CCgtTgt22B.1.1.3590.055556
ORF1024R24CCgtTgt22B.1.1.500.001358
ORF1024R24CCgtTgt22B.1.1.5260.007092
ORF1024R24PcGtcCt22B.1.1.70.000002
ORF1024R24FCGtTTt12B.1.1.70.000001
ORF1024R24FCGTTTC12B.1.1.70.000001
ORF1024R24SCgtAgt22B.1.110.30.001437
ORF1024R24CCgtTgt22B.1.1460.008475
ORF1024R24LcGtcTt22B.1.1600.000062
ORF1024R24LcGtcTt22B.1.177.120.000303
ORF1024R24CCgtTgt22B.1.177.190.002861
ORF1024R24CCgtTgt22B.1.177.50.002484
ORF1024R24CCgtTgt22B.1.177.580.002663
ORF1024R24LcGtcTt22B.1.177.830.002963
ORF1024R24CCgtTgt22B.1.258.30.00335
ORF1024R24CCgtTgt22B.1.3060.011429
ORF1024R24LcGtcTt22B.1.3110.000549
ORF1024R24CCgtTgt22B.1.3620.003082
ORF1024R24CCgtTgt22B.1.3720.021978
ORF1024R24CCgtTgt22B.1.4040.002604
ORF1024R24delCGT---22B.1.438.10.000215
ORF1024R24CCgtTgt22B.1.466.20.000782
ORF1024R24HcGtcAt22B.1.4800.004975
ORF1024R24SCgtAgt22B.1.5400.019417
ORF1024R24CCgtTgt22B.1.5650.001621
ORF1024R24CCgtTgt22B.1.5680.002222
ORF1024R24CCgtTgt22B.1.5820.000981
ORF1024R24CCgtTgt22B.1.6190.001742
ORF1024R24LcGtcTt22B.1.6210.000177
ORF1024R24CCgtTgt22B.1.621.10.001012
ORF1024R24LcGtcTt22B.1.6370.000146
ORF1024R24CCgtTgt22B.40.004415
ORF1024R24CCgtTgt22C.37.10.005236
ORF1024R24delCGT---22P.10.000032
ORF1024R24CCgtTgt22P.1.100.000539
ORF1024R24CCgtTgt22P.1.120.000968
ORF1024R24SCgtAgt22P.1.140.000096
ORF1024R24HcGtcAt22P.1.140.000096
ORF1024R24LcGtcTt22P.20.000373
ORF1024R24HcGtcAt22Q.20.001227
ORF1024R24CCgtTgt22Q.70.002222
ORF1024R24CCgtTgt110.055556
ORF1024R24FCGtTTt110.055556
ORF1024R24LcGtcTt110.055556
ORF1024R24delCGT---11A.10.000282
ORF1024R24CCgtTgt11A.10.000282
ORF1024R24LcGtcTt11A.10.000282
ORF1024R24CCgtTgt11A.190.009434
ORF1024R24LcGtcTt11A.20.000662
ORF1024R24CCgtTgt11A.2.20.001689
ORF1024R24LcGtcTt11A.2.20.001689
ORF1024R24LcGtcTt11A.2.5.20.001572
ORF1024R24HcGtcAt11A.2.5.30.010309
ORF1024R24LcGtcTt11A.23.10.000704
ORF1024R24CCgtTgt11A.270.001656
ORF1024R24SCgtAgt11AE.30.032258
ORF1024R24CCgtTgt11AE.80.000489
ORF1024R24CCgtTgt11AH.30.003802
ORF1024R24NCGTAAC11All0
ORF1024R24ICGTATA11All0
ORF1024R24del2cGTc--11All0
ORF1024R24QcGTcAA11All0
ORF1024R24CCgtTgt11AY.10.000396
ORF1024R24LcGtcTt11AY.10.000396
ORF1024R24LcGtcTt11AY.100.00053
ORF1024R24FCGtTTt11AY.1020.000027
ORF1024R24RcgTcgC11AY.1020.000027
ORF1024R24RcgTcgC11AY.1030.000006
ORF1024R24CCgtTgt11AY.1040.001984
ORF1024R24HcGtcAt11AY.1050.000643
ORF1024R24LcGtcTt11AY.1050.000643
ORF1024R24HcGtcAt11AY.1070.000466
ORF1024R24RcgTcgC11AY.1070.000466
ORF1024R24RcgTcgC11AY.1080.001103
ORF1024R24CCgtTgt11AY.1080.001103
ORF1024R24CCgtTgt11AY.1100.000113
ORF1024R24LcGtcTt11AY.1100.000113
ORF1024R24LcGtcTt11AY.1130.000142
ORF1024R24RcgTcgC11AY.1130.000142
ORF1024R24CCgtTgt11AY.1140.000231
ORF1024R24HcGtcAt11AY.1170.000085
ORF1024R24LcGtcTt11AY.1180.000063
ORF1024R24RcgTcgC11AY.120.000316
ORF1024R24PcGtcCt11AY.1200.000037
ORF1024R24LcGtcTt11AY.120.20.001285
ORF1024R24del1Cgt-gt11AY.1210.000135
ORF1024R24FCGtTTt11AY.1210.000135
ORF1024R24HcGtcAt11AY.1210.000135
ORF1024R24HcGtcAt11AY.130.000161
ORF1024R24SCgtAgt11AY.160.00038
ORF1024R24CCgtTgt11AY.16.10.00047
ORF1024R24HcGtcAt11AY.16.10.00047
ORF1024R24LcGtcTt11AY.170.008197
ORF1024R24HcGtcAt11AY.180.010101
ORF1024R24HcGtcAt11AY.190.00114
ORF1024R24CCgtTgt11AY.20.000356
ORF1024R24RcgTcgC11AY.200.000039
ORF1024R24LcGtcTt11AY.210.001898
ORF1024R24RcgTcgA11AY.23.10.000417
ORF1024R24CCgtTgt11AY.240.000431
ORF1024R24NCGTAAC11AY.250.000006
ORF1024R24HcGtcAt11AY.270.000065
ORF1024R24PcGtcCt11AY.270.000065
ORF1024R24RcgTcgC11AY.290.000016
ORF1024R24delCGT---11AY.30.00001
ORF1024R24HcGtcAt11AY.3.10.000085
ORF1024R24HcGtcAt11AY.300.000396
ORF1024R24CCgtTgt11AY.340.000097
ORF1024R24CCgtTgt11AY.34.10.00051
ORF1024R24SCgtAgt11AY.390.000025
ORF1024R24HcGtcAt11AY.39.10.00004
ORF1024R24PcGtcCt11AY.39.10.00004
ORF1024R24SCgtAgt11AY.4.20.000022
ORF1024R24PcGtcCt11AY.4.20.000022
ORF1024R24LcGtcTt11AY.4.20.000022
ORF1024R24RcgTcgC11AY.4.2.10.000149
ORF1024R24LcGtcTt11AY.4.40.000409
ORF1024R24HcGtcAt11AY.4.50.000107
ORF1024R24CCgtTgt11AY.4.50.000107
ORF1024R24CCgtTgt11AY.400.000964
ORF1024R24LcGtcTt11AY.410.000294
ORF1024R24HcGtcAt11AY.410.000294
ORF1024R24del1Cgt-gt11AY.440.000006
ORF1024R24QcGTcAA11AY.440.000006
ORF1024R24HcGtcAt11AY.450.000122
ORF1024R24HcGtcAt11AY.460.000104
ORF1024R24RcgTcgC11AY.46.20.000635
ORF1024R24LcGtcTt11AY.46.20.000635
ORF1024R24LcGtcTt11AY.46.40.000165
ORF1024R24CCgtTgt11AY.46.60.000072
ORF1024R24LcGtcTt11AY.46.60.000072
ORF1024R24delCGT---11AY.46.60.000072
ORF1024R24LcGtcTt11AY.470.000031
ORF1024R24WCgTTgG11AY.470.000031
ORF1024R24CCgtTgt11AY.480.000465
ORF1024R24PcGtcCt11AY.5.40.000277
ORF1024R24CCgtTgt11AY.520.000814
ORF1024R24SCgtAgt11AY.530.000288
ORF1024R24LcGtcTt11AY.540.000095
ORF1024R24HcGtcAt11AY.550.000917
ORF1024R24CCgtTgt11AY.560.001605
ORF1024R24LcGtcTt11AY.570.000656
ORF1024R24GCgtGgt11AY.580.000907
ORF1024R24HcGtcAt11AY.590.00053
ORF1024R24LcGtcTt11AY.600.000938
ORF1024R24SCgtAgt11AY.610.000105
ORF1024R24LcGtcTt11AY.610.000105
ORF1024R24delCGT---11AY.620.000436
ORF1024R24delCGT---11AY.650.000533
ORF1024R24CCgtTgt11AY.680.000274
ORF1024R24LcGtcTt11AY.700.000209
ORF1024R24CCgtTgt11AY.700.000209
ORF1024R24HcGtcAt11AY.740.000116
ORF1024R24PcGtcCt11AY.740.000116
ORF1024R24HcGtcAt11AY.750.000056
ORF1024R24SCgtAgt11AY.750.000056
ORF1024R24PcGtcCt11AY.75.10.00018
ORF1024R24CCgtTgt11AY.780.001541
ORF1024R24CCgtTgt11AY.840.000437
ORF1024R24RcgTcgC11AY.850.000427
ORF1024R24LcGtcTt11AY.90.000068
ORF1024R24SCgtAgt11AY.90.000068
ORF1024R24PcGtcCt11AY.9.20.000037
ORF1024R24CCgtTgt11AY.900.000684
ORF1024R24HcGtcAt11AY.920.000287
ORF1024R24CCgtTgt11AY.930.000273
ORF1024R24PcGtcCt11AY.980.000079
ORF1024R24LcGtcTt11AY.98.10.000048
ORF1024R24RcgTcgG11AY.98.10.000048
ORF1024R24LcGtcTt11AY.990.001049
ORF1024R24HcGtcAt11AY.99.10.001553
ORF1024R24LcGtcTt11AZ.20.000821
ORF1024R24GCgtGgt11B0.000128
ORF1024R24RcgTcgC11B0.000128
ORF1024R24del1Cgt-gt11B.10.000009
ORF1024R24GCgtGgt11B.1.10.000018
ORF1024R24PcGtcCt11B.1.10.000018
ORF1024R24delCGT---11B.1.10.000018
ORF1024R24CCgtTgt11B.1.1.100.001115
ORF1024R24CCgtTgt11B.1.1.1890.001513
ORF1024R24CCgtTgt11B.1.1.2100.005714
ORF1024R24LcGtcTt11B.1.1.2160.00089
ORF1024R24LcGtcTt11B.1.1.2180.007692
ORF1024R24CCgtTgt11B.1.1.2220.000204
ORF1024R24LcGtcTt11B.1.1.2240.014286
ORF1024R24CCgtTgt11B.1.1.2300.009174
ORF1024R24CCgtTgt11B.1.1.2310.003096
ORF1024R24HcGtcAt11B.1.1.2410.00207
ORF1024R24CCgtTgt11B.1.1.2410.00207
ORF1024R24LcGtcTt11B.1.1.250.000569
ORF1024R24CCgtTgt11B.1.1.2530.002506
ORF1024R24FCGTTTC11B.1.1.270.00565
ORF1024R24CCgtTgt11B.1.1.2770.000759
ORF1024R24GCgtGgt11B.1.1.280.000311
ORF1024R24CCgtTgt11B.1.1.280.000311
ORF1024R24CCgtTgt11B.1.1.2800.003086
ORF1024R24HcGtcAt11B.1.1.2840.000107
ORF1024R24CCgtTgt11B.1.1.2840.000107
ORF1024R24CCgtTgt11B.1.1.2980.000862
ORF1024R24del1Cgt-gt11B.1.1.3060.000438
ORF1024R24LcGtcTt11B.1.1.3060.000438
ORF1024R24CCgtTgt11B.1.1.3180.000302
ORF1024R24SCgtAgt11B.1.1.3180.000302
ORF1024R24LcGtcTt11B.1.1.3220.008772
ORF1024R24CCgtTgt11B.1.1.330.000421
ORF1024R24CCgtTgt11B.1.1.3360.016667
ORF1024R24CCgtTgt11B.1.1.3630.005988
ORF1024R24CCgtTgt11B.1.1.3690.000446
ORF1024R24HcGtcAt11B.1.1.3700.012658
ORF1024R24CCgtTgt11B.1.1.3770.001381
ORF1024R24LcGtcTt11B.1.1.3890.006061
ORF1024R24RcgTcgC11B.1.1.390.00051
ORF1024R24LcGtcTt11B.1.1.390.00051
ORF1024R24LcGtcTt11B.1.1.4090.002833
ORF1024R24CCgtTgt11B.1.1.4220.045455
ORF1024R24CCgtTgt11B.1.1.4320.001266
ORF1024R24CCgtTgt11B.1.1.4560.055556
ORF1024R24CCgtTgt11B.1.1.470.005348
ORF1024R24SCgtAgt11B.1.1.5190.00004
ORF1024R24CCgtTgt11B.1.1.5250.005464
ORF1024R24CCgtTgt11B.1.1.540.003021
ORF1024R24CCgtTgt11B.1.1.610.008772
ORF1024R24LcGtcTt11B.1.1.630.000386
ORF1024R24GCgtGgt11B.1.1.70.000001
ORF1024R24delCGT---11B.1.1.70.000001
ORF1024R24GCgtGgt11B.1.1.740.00431
ORF1024R24HcGtcAt11B.1.1.830.00271
ORF1024R24CCgtTgt11B.1.1060.03125
ORF1024R24CCgtTgt11B.1.110.30.000718
ORF1024R24HcGtcAt11B.1.110.30.000718
ORF1024R24CCgtTgt11B.1.1390.000733
ORF1024R24CCgtTgt11B.1.1470.000756
ORF1024R24CCgtTgt11B.1.1530.018868
ORF1024R24RcgTcgC11B.1.1600.000031
ORF1024R24CCgtTgt11B.1.160.160.000929
ORF1024R24CCgtTgt11B.1.160.300.002976
ORF1024R24delCGT---11B.1.1770.000013
ORF1024R24RcgTcgC11B.1.1770.000013
ORF1024R24CCgtTgt11B.1.177.100.000878
ORF1024R24CCgtTgt11B.1.177.210.000076
ORF1024R24RcgTcgC11B.1.177.210.000076
ORF1024R24LcGtcTt11B.1.177.230.003236
ORF1024R24LcGtcTt11B.1.177.40.000211
ORF1024R24CCgtTgt11B.1.177.420.000894
ORF1024R24HcGtcAt11B.1.177.430.001477
ORF1024R24RcgTcgC11B.1.177.540.000606
ORF1024R24CCgtTgt11B.1.177.560.000668
ORF1024R24CCgtTgt11B.1.177.600.000218
ORF1024R24WCgTTgG11B.1.177.630.002703
ORF1024R24HcGtcAt11B.1.177.70.000165
ORF1024R24CCgtTgt11B.1.177.730.000566
ORF1024R24CCgtTgt11B.1.177.80.000752
ORF1024R24del2cGTc--11B.1.20.000009
ORF1024R24RcgTcgA11B.1.20.000009
ORF1024R24LcGtcTt11B.1.2100.002132
ORF1024R24HcGtcAt11B.1.2210.000071
ORF1024R24LcGtcTt11B.1.2220.001692
ORF1024R24HcGtcAt11B.1.2430.00007
ORF1024R24CCgtTgt11B.1.258.110.000396
ORF1024R24delCGT---11B.1.258.160.001637
ORF1024R24CCgtTgt11B.1.258.210.007752
ORF1024R24CCgtTgt11B.1.2600.003344
ORF1024R24CCgtTgt11B.1.2650.001271
ORF1024R24LcGtcTt11B.1.2790.000514
ORF1024R24CCgtTgt11B.1.2790.000514
ORF1024R24CCgtTgt11B.1.2890.00266
ORF1024R24CCgtTgt11B.1.3110.000275
ORF1024R24CCgtTgt11B.1.3240.001605
ORF1024R24CCgtTgt11B.1.3360.002439
ORF1024R24CCgtTgt11B.1.3380.008621
ORF1024R24VCGTGTA11B.1.3510.00003
ORF1024R24CCgtTgt11B.1.351.30.000876
ORF1024R24RcgTcgC11B.1.360.000146
ORF1024R24VCGTGTA11B.1.36.10.00114
ORF1024R24LcGtcTt11B.1.36.100.004785
ORF1024R24CCgtTgt11B.1.36.360.000602
ORF1024R24CCgtTgt11B.1.36.70.004
ORF1024R24HcGtcAt11B.1.36.80.001
ORF1024R24LcGtcTt11B.1.3690.000285
ORF1024R24LcGtcTt11B.1.3710.001122
ORF1024R24CCgtTgt11B.1.3750.00082
ORF1024R24LcGtcTt11B.1.3750.00082
ORF1024R24CCgtTgt11B.1.3770.004566
ORF1024R24LcGtcTt11B.1.3820.008929
ORF1024R24CCgtTgt11B.1.3910.001127
ORF1024R24LcGtcTt11B.1.3960.000706
ORF1024R24LcGtcTt11B.1.3980.002976
ORF1024R24CCgtTgt11B.1.400.10.015152
ORF1024R24CCgtTgt11B.1.4080.00369
ORF1024R24CCgtTgt11B.1.4090.000781
ORF1024R24CCgtTgt11B.1.4150.014286
ORF1024R24LcGtcTt11B.1.4160.001269
ORF1024R24HcGtcAt11B.1.4220.000812
ORF1024R24CCgtTgt11B.1.4220.000812
ORF1024R24SCgtAgt11B.1.4270.00005
ORF1024R24HcGtcAt11B.1.4290.000024
ORF1024R24CCgtTgt11B.1.4380.006536
ORF1024R24LcGtcTt11B.1.4430.004673
ORF1024R24CCgtTgt11B.1.4560.003268
ORF1024R24LcGtcTt11B.1.4590.004082
ORF1024R24ICGTATA11B.1.4970.000315
ORF1024R24HcGtcAt11B.1.4990.00105
ORF1024R24LcGtcTt11B.1.5000.052632
ORF1024R24CCgtTgt11B.1.5030.002488
ORF1024R24LcGtcTt11B.1.5170.000427
ORF1024R24CCgtTgt11B.1.5240.001406
ORF1024R24SCgtAgt11B.1.5260.000024
ORF1024R24HcGtcAt11B.1.5260.000024
ORF1024R24LcGtcTt11B.1.5320.006211
ORF1024R24CCgtTgt11B.1.5500.013699
ORF1024R24RcgTcgC11B.1.5510.00129
ORF1024R24LcGtcTt11B.1.5550.022222
ORF1024R24LcGtcTt11B.1.5660.019231
ORF1024R24CCgtTgt11B.1.575.10.002439
ORF1024R24delCGT---11B.1.5760.000907
ORF1024R24LcGtcTt11B.1.5800.004065
ORF1024R24delCGT---11B.1.5820.000491
ORF1024R24CCgtTgt11B.1.5870.001898
ORF1024R24HcGtcAt11B.1.5890.007576
ORF1024R24HcGtcAt11B.1.5920.04
ORF1024R24LcGtcTt11B.1.5950.000261
ORF1024R24HcGtcAt11B.1.5960.000087
ORF1024R24CCgtTgt11B.1.6010.030303
ORF1024R24LcGtcTt11B.1.6030.010638
ORF1024R24SCGTTCC11B.1.617.10.000129
ORF1024R24delCGT---11B.1.617.20.000004
ORF1024R24LcGtcTt11B.1.619.10.000641
ORF1024R24LcGtcTt11B.1.621.10.000506
ORF1024R24CCgtTgt11B.1.6250.002353
ORF1024R24CCgtTgt11B.1.90.006173
ORF1024R24LcGtcTt11B.550.00295
ORF1024R24LcGtcTt11B.6.60.000889
ORF1024R24LcGtcTt11C.140.004329
ORF1024R24RcgTcgC11C.36.30.000567
ORF1024R24delCGT---11C.370.000116
ORF1024R24RcgTcgC11D.20.000075
ORF1024R24LcGtcTt11D.20.000075
ORF1024R24CCgtTgt11N.40.004255
ORF1024R24RcgTcgA11P.10.000016
ORF1024R24LcGtcTt11P.1.130.000898
ORF1024R24delCGT---11P.1.170.000162
ORF1024R24LcGtcTt11P.1.70.000319
ORF1024R24HcGtcAt11P.1.70.000319
ORF1024R24CCgtTgt11P.30.001595
ORF1024R24CCgtTgt11Q.40.000455
ORF1024R24CCgtTgt11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.