CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 23

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF10	23	S23F		nonsyn	tCt	tTt	6345	6345	1	29624-29626
ORF10	23	S23P		nonsyn	Tct	Cct	3313	3311	0.999396	29624-29626
ORF10	23	S23P		nonsyn	TcT	CcC	3313	1	0.000301841	29624-29626
ORF10	23	S23P		nonsyn	TcT	CcG	3313	1	0.000301841	29624-29626
ORF10	23	S23S		syn	tcT	tcC	525	425	0.809524	29624-29626
ORF10	23	S23S		syn	tcT	tcA	525	76	0.144762	29624-29626
ORF10	23	S23S		syn	tcT	tcG	525	24	0.0457143	29624-29626
ORF10	23	S23del		del	TCT	---	31	31	1	29624-29626
ORF10	23	S23T		nonsyn	Tct	Act	26	26	1	29624-29626
ORF10	23	S23A		nonsyn	Tct	Gct	6	6	1	29624-29626
ORF10	23	S23Y		nonsyn	tCt	tAt	4	4	1	29624-29626
ORF10	23	S23C		nonsyn	tCt	tGt	3	2	0.666667	29624-29626
ORF10	23	S23C		nonsyn	tCT	tGC	3	1	0.333333	29624-29626
ORF10	23	S23R		nonsyn	TCT	AGA	1	1	1	29624-29626

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF10	23	S23F	tCt	tTt	6345	6345	All	0.001214
ORF10	23	S23P	Tct	Cct	3311	3313	All	0.000633
ORF10	23	S23P	TcT	CcG	1	3313	All	0
ORF10	23	S23P	TcT	CcC	1	3313	All	0
ORF10	23	S23P	Tct	Cct	2766	2766	AY.103	0.017174
ORF10	23	S23F	tCt	tTt	966	966	AY.33	0.064508
ORF10	23	S23F	tCt	tTt	791	791	B.1.497	0.248977
ORF10	23	S23F	tCt	tTt	719	719	B.1.1.7	0.000644
ORF10	23	S23F	tCt	tTt	556	556	AY.4	0.000865
ORF10	23	S23S	tcT	tcC	425	525	All	0.000081
ORF10	23	S23S	tcT	tcA	76	525	All	0.000015
ORF10	23	S23S	tcT	tcG	24	525	All	0.000005
ORF10	23	S23F	tCt	tTt	484	484	AY.25	0.002911
ORF10	23	S23F	tCt	tTt	406	406	B.1.438.1	0.043548
ORF10	23	S23P	Tct	Cct	233	233	AY.4.2	0.005053
ORF10	23	S23F	tCt	tTt	188	188	B.1.2	0.001655
ORF10	23	S23F	tCt	tTt	188	188	B.1.617.2	0.000708
ORF10	23	S23S	tcT	tcC	143	182	B.1.429	0.003365
ORF10	23	S23S	tcT	tcA	39	182	B.1.429	0.000918
ORF10	23	S23F	tCt	tTt	160	160	AY.5	0.003304
ORF10	23	S23F	tCt	tTt	116	116	AY.43	0.000514
ORF10	23	S23F	tCt	tTt	97	97	AY.3	0.000965
ORF10	23	S23F	tCt	tTt	85	85	B.1	0.000779
ORF10	23	S23P	Tct	Cct	79	79	AY.4	0.000123
ORF10	23	S23F	tCt	tTt	79	79	B.1.426	0.079717
ORF10	23	S23F	tCt	tTt	75	75	AY.27	0.004854
ORF10	23	S23F	tCt	tTt	66	66	B.1.427	0.003333
ORF10	23	S23F	tCt	tTt	60	60	B.1.177	0.00079
ORF10	23	S23F	tCt	tTt	55	55	B.1.1.123	0.982143
ORF10	23	S23S	tcT	tcC	43	54	B.1.2	0.000379
ORF10	23	S23S	tcT	tcA	11	54	B.1.2	0.000097
ORF10	23	S23F	tCt	tTt	53	53	AY.44	0.000323
ORF10	23	S23F	tCt	tTt	51	51	AY.103	0.000317
ORF10	23	S23F	tCt	tTt	50	50	AY.4.5	0.005375
ORF10	23	S23F	tCt	tTt	48	48	P.1	0.000756
ORF10	23	S23P	Tct	Cct	41	41	AY.120	0.001524
ORF10	23	S23F	tCt	tTt	41	41	B.1.1	0.000744
ORF10	23	S23F	tCt	tTt	38	38	C.3	0.290076
ORF10	23	S23S	tcT	tcC	30	37	B.1.427	0.001515
ORF10	23	S23S	tcT	tcA	7	37	B.1.427	0.000353
ORF10	23	S23S	tcT	tcC	29	37	B.1.617.2	0.000109
ORF10	23	S23S	tcT	tcG	8	37	B.1.617.2	0.00003
ORF10	23	S23P	Tct	Cct	33	33	B.1.617.2	0.000124
ORF10	23	S23del	TCT	---	31	31	All	0.000006
ORF10	23	S23F	tCt	tTt	28	28	AY.61	0.002934
ORF10	23	S23F	tCt	tTt	27	27	AY.47	0.00084
ORF10	23	S23F	tCt	tTt	27	27	B.1.351	0.000803
ORF10	23	S23T	Tct	Act	26	26	All	0.000005
ORF10	23	S23F	tCt	tTt	26	26	AY.16.1	0.012218
ORF10	23	S23F	tCt	tTt	26	26	B.1.429	0.000612
ORF10	23	S23F	tCt	tTt	25	25	AY.100	0.00115
ORF10	23	S23F	tCt	tTt	25	25	B.1.1.222	0.0051
ORF10	23	S23F	tCt	tTt	25	25	B.1.1.519	0.000993
ORF10	23	S23F	tCt	tTt	23	23	AY.20	0.000894
ORF10	23	S23F	tCt	tTt	23	23	AY.7.2	0.012864
ORF10	23	S23P	Tct	Cct	23	23	B.1.1.7	0.000021
ORF10	23	S23F	tCt	tTt	23	23	B.1.234	0.003035
ORF10	23	S23F	tCt	tTt	21	21	AY.10	0.011129
ORF10	23	S23P	Tct	Cct	20	20	AY.20	0.000777
ORF10	23	S23S	tcT	tcC	20	20	B.1.1.318	0.006035
ORF10	23	S23F	tCt	tTt	20	20	B.1.1.354	0.087719
ORF10	23	S23F	tCt	tTt	19	19	B.1.177.86	0.003486
ORF10	23	S23F	tCt	tTt	18	18	AY.39	0.000445
ORF10	23	S23F	tCt	tTt	17	17	AY.118	0.001065
ORF10	23	S23S	tcT	tcC	16	16	AY.74	0.00185
ORF10	23	S23S	tcT	tcC	16	16	AY.99.2	0.001475
ORF10	23	S23F	tCt	tTt	15	15	AY.29	0.000237
ORF10	23	S23F	tCt	tTt	15	15	AY.98.1	0.000726
ORF10	23	S23F	tCt	tTt	15	15	B.1.1.192	0.034642
ORF10	23	S23P	Tct	Cct	15	15	B.1.517	0.006405
ORF10	23	S23F	tCt	tTt	14	14	AY.75	0.000784
ORF10	23	S23F	tCt	tTt	14	14	B.1.1.50	0.009504
ORF10	23	S23F	tCt	tTt	13	13	AY.6	0.000535
ORF10	23	S23F	tCt	tTt	13	13	B.1.526	0.000306
ORF10	23	S23F	tCt	tTt	12	12	AY.119	0.000424
ORF10	23	S23F	tCt	tTt	12	12	AY.26	0.00034
ORF10	23	S23P	Tct	Cct	12	12	AY.44	0.000073
ORF10	23	S23F	tCt	tTt	12	12	C.37	0.001393
ORF10	23	S23F	tCt	tTt	11	11	AY.68	0.003011
ORF10	23	S23F	tCt	tTt	11	11	B.1.265	0.013977
ORF10	23	S23F	tCt	tTt	10	10	A.2.5.1	0.048077
ORF10	23	S23F	tCt	tTt	10	10	AY.4.2	0.000217
ORF10	23	S23F	tCt	tTt	10	10	AY.46	0.001041
ORF10	23	S23S	tcT	tcC	10	10	B.1.1.7	0.000009
ORF10	23	S23S	tcT	tcC	6	10	B.1.243	0.000418
ORF10	23	S23S	tcT	tcA	4	10	B.1.243	0.000278
ORF10	23	S23P	Tct	Cct	10	10	B.1.596	0.000871
ORF10	23	S23F	tCt	tTt	9	9	AY.5.4	0.00249
ORF10	23	S23F	tCt	tTt	9	9	B.1.160	0.000281
ORF10	23	S23F	tCt	tTt	9	9	B.1.311	0.002471
ORF10	23	S23F	tCt	tTt	8	8	AY.102	0.000212
ORF10	23	S23F	tCt	tTt	8	8	AY.34	0.000776
ORF10	23	S23T	Tct	Act	8	8	AY.4	0.000012
ORF10	23	S23S	tcT	tcC	7	8	B.1.1.416	0.006335
ORF10	23	S23S	tcT	tcA	1	8	B.1.1.416	0.000905
ORF10	23	S23F	tCt	tTt	8	8	B.1.214.2	0.004796
ORF10	23	S23S	tcT	tcC	8	8	B.1.526	0.000188
ORF10	23	S23F	tCt	tTt	7	7	AD.2	0.001533
ORF10	23	S23S	tcT	tcC	7	7	AY.103	0.000043
ORF10	23	S23F	tCt	tTt	7	7	AY.46.6	0.000505
ORF10	23	S23S	tcT	tcC	7	7	B.1.367	0.005547
ORF10	23	S23F	tCt	tTt	7	7	B.1.466.2	0.002739
ORF10	23	S23F	tCt	tTt	7	7	B.1.628	0.002467
ORF10	23	S23A	Tct	Gct	6	6	All	0.000001
ORF10	23	S23P	Tct	Cct	6	6	AY.3	0.00006
ORF10	23	S23P	Tct	Cct	6	6	AY.33	0.000401
ORF10	23	S23F	tCt	tTt	6	6	AY.42	0.000241
ORF10	23	S23F	tCt	tTt	6	6	B	0.000767
ORF10	23	S23S	tcT	tcA	3	6	B.1.1	0.000054
ORF10	23	S23S	tcT	tcC	3	6	B.1.1	0.000054
ORF10	23	S23F	tCt	tTt	6	6	B.1.221	0.000426
ORF10	23	S23F	tCt	tTt	6	6	B.1.439	0.035503
ORF10	23	S23F	tCt	tTt	6	6	B.1.617.1	0.000774
ORF10	23	S23F	tCt	tTt	5	5	AY.117	0.000423
ORF10	23	S23F	tCt	tTt	5	5	AY.23	0.000349
ORF10	23	S23P	Tct	Cct	4	5	AY.25	0.000024
ORF10	23	S23P	TcT	CcC	1	5	AY.25	0.000006
ORF10	23	S23S	tcT	tcC	5	5	AY.4	0.000008
ORF10	23	S23F	tCt	tTt	5	5	AY.85	0.002136
ORF10	23	S23F	tCt	tTt	5	5	AY.99.2	0.000461
ORF10	23	S23F	tCt	tTt	5	5	B.1.1.351	0.013966
ORF10	23	S23S	tcT	tcC	4	5	B.1.1.519	0.000159
ORF10	23	S23S	tcT	tcA	1	5	B.1.1.519	0.00004
ORF10	23	S23F	tCt	tTt	5	5	B.1.177.81	0.000947
ORF10	23	S23F	tCt	tTt	5	5	B.1.523	0.012255
ORF10	23	S23S	tcT	tcC	3	5	B.1.561	0.001191
ORF10	23	S23S	tcT	tcA	2	5	B.1.561	0.000794
ORF10	23	S23P	Tct	Cct	5	5	C.37	0.00058
ORF10	23	S23F	tCt	tTt	4	4	A.2.5	0.001996
ORF10	23	S23Y	tCt	tAt	4	4	All	0.000001
ORF10	23	S23S	tcT	tcG	4	4	AY.117	0.000338
ORF10	23	S23F	tCt	tTt	4	4	AY.121	0.000541
ORF10	23	S23F	tCt	tTt	4	4	AY.22	0.008368
ORF10	23	S23S	tcT	tcC	3	4	AY.25	0.000018
ORF10	23	S23S	tcT	tcG	1	4	AY.25	0.000006
ORF10	23	S23P	Tct	Cct	4	4	AY.39	0.000099
ORF10	23	S23S	tcT	tcC	4	4	AY.42	0.000161
ORF10	23	S23F	tCt	tTt	4	4	AY.5.3	0.00135
ORF10	23	S23F	tCt	tTt	4	4	AY.75.1	0.000721
ORF10	23	S23F	tCt	tTt	4	4	AY.9.2	0.000147
ORF10	23	S23F	tCt	tTt	4	4	AY.98	0.000316
ORF10	23	S23F	tCt	tTt	4	4	B.1.1.1	0.001307
ORF10	23	S23F	tCt	tTt	4	4	B.1.1.25	0.002274
ORF10	23	S23F	tCt	tTt	4	4	B.1.1.317	0.001647
ORF10	23	S23F	tCt	tTt	4	4	B.1.1.318	0.001207
ORF10	23	S23F	tCt	tTt	4	4	B.1.111	0.0047
ORF10	23	S23del	TCT	---	4	4	B.1.2	0.000035
ORF10	23	S23S	tcT	tcA	2	4	B.1.232	0.001075
ORF10	23	S23S	tcT	tcC	2	4	B.1.232	0.001075
ORF10	23	S23S	tcT	tcC	2	4	B.1.241	0.001623
ORF10	23	S23S	tcT	tcA	2	4	B.1.241	0.001623
ORF10	23	S23F	tCt	tTt	4	4	B.1.480	0.00995
ORF10	23	S23F	tCt	tTt	4	4	D.2	0.0003
ORF10	23	S23F	tCt	tTt	4	4	P.2	0.000747
ORF10	23	S23F	tCt	tTt	4	4	Q.1	0.000505
ORF10	23	S23F	tCt	tTt	4	4	Q.8	0.00066
ORF10	23	S23T	Tct	Act	3	3	A.2.5	0.001497
ORF10	23	S23F	tCt	tTt	3	3	AE.8	0.001467
ORF10	23	S23C	tCt	tGt	2	3	All	0
ORF10	23	S23C	tCT	tGC	1	3	All	0
ORF10	23	S23F	tCt	tTt	3	3	AY.111	0.000549
ORF10	23	S23F	tCt	tTt	3	3	AY.120	0.000112
ORF10	23	S23S	tcT	tcC	3	3	AY.3	0.00003
ORF10	23	S23F	tCt	tTt	3	3	AY.37	0.000948
ORF10	23	S23F	tCt	tTt	3	3	AY.46.4	0.000494
ORF10	23	S23F	tCt	tTt	3	3	AY.46.5	0.000595
ORF10	23	S23F	tCt	tTt	3	3	AY.48	0.001395
ORF10	23	S23F	tCt	tTt	3	3	AY.71	0.001425
ORF10	23	S23F	tCt	tTt	3	3	AY.9	0.000203
ORF10	23	S23S	tcT	tcC	3	3	B.1	0.000027
ORF10	23	S23del	TCT	---	3	3	B.1	0.000027
ORF10	23	S23P	Tct	Cct	3	3	B.1	0.000027
ORF10	23	S23F	tCt	tTt	3	3	B.1.1.306	0.001315
ORF10	23	S23F	tCt	tTt	3	3	B.1.1.432	0.003797
ORF10	23	S23F	tCt	tTt	3	3	B.1.160.7	0.006237
ORF10	23	S23F	tCt	tTt	3	3	B.1.177.57	0.000843
ORF10	23	S23F	tCt	tTt	3	3	B.1.189	0.012876
ORF10	23	S23F	tCt	tTt	3	3	B.1.351.2	0.000908
ORF10	23	S23F	tCt	tTt	3	3	B.1.36.29	0.001552
ORF10	23	S23F	tCt	tTt	3	3	B.1.369	0.000856
ORF10	23	S23F	tCt	tTt	3	3	B.1.565	0.002431
ORF10	23	S23F	tCt	tTt	3	3	B.1.582	0.001472
ORF10	23	S23S	tcT	tcC	2	3	B.1.588	0.00182
ORF10	23	S23S	tcT	tcA	1	3	B.1.588	0.00091
ORF10	23	S23F	tCt	tTt	3	3	B.1.595	0.000783
ORF10	23	S23F	tCt	tTt	3	3	B.1.596	0.000261
ORF10	23	S23T	Tct	Act	3	3	B.1.617.2	0.000011
ORF10	23	S23F	tCt	tTt	3	3	B.1.621	0.000266
ORF10	23	S23S	tcT	tcC	3	3	N.5	0.0053
ORF10	23	S23F	tCt	tTt	3	3	P.1.14	0.000143
ORF10	23	S23F	tCt	tTt	2	2	A.23.1	0.001408
ORF10	23	S23T	Tct	Act	2	2	AY.100	0.000092
ORF10	23	S23P	Tct	Cct	2	2	AY.102	0.000053
ORF10	23	S23F	tCt	tTt	2	2	AY.108	0.002205
ORF10	23	S23P	Tct	Cct	2	2	AY.117	0.000169
ORF10	23	S23F	tCt	tTt	2	2	AY.14	0.000176
ORF10	23	S23P	Tct	Cct	2	2	AY.16	0.000759
ORF10	23	S23del	TCT	---	2	2	AY.25	0.000012
ORF10	23	S23F	tCt	tTt	2	2	AY.3.1	0.000171
ORF10	23	S23F	tCt	tTt	2	2	AY.36	0.000296
ORF10	23	S23del	TCT	---	2	2	AY.39.1	0.000079
ORF10	23	S23F	tCt	tTt	2	2	AY.39.1	0.000079
ORF10	23	S23P	Tct	Cct	2	2	AY.43	0.000009
ORF10	23	S23S	tcT	tcG	1	2	AY.43	0.000004
ORF10	23	S23S	tcT	tcC	1	2	AY.43	0.000004
ORF10	23	S23S	tcT	tcC	2	2	AY.44	0.000012
ORF10	23	S23del	TCT	---	2	2	AY.44	0.000012
ORF10	23	S23S	tcT	tcG	1	2	AY.45	0.000122
ORF10	23	S23S	tcT	tcC	1	2	AY.45	0.000122
ORF10	23	S23P	Tct	Cct	2	2	AY.46.6	0.000144
ORF10	23	S23P	Tct	Cct	2	2	AY.47	0.000062
ORF10	23	S23F	tCt	tTt	2	2	AY.53	0.000575
ORF10	23	S23F	tCt	tTt	2	2	AY.59	0.001059
ORF10	23	S23F	tCt	tTt	2	2	AY.60	0.001876
ORF10	23	S23F	tCt	tTt	2	2	AY.62	0.000871
ORF10	23	S23F	tCt	tTt	2	2	AY.69	0.000373
ORF10	23	S23F	tCt	tTt	2	2	AY.84	0.000875
ORF10	23	S23P	Tct	Cct	2	2	AY.88	0.001768
ORF10	23	S23F	tCt	tTt	2	2	AY.9.1	0.000167
ORF10	23	S23P	Tct	Cct	2	2	AY.98	0.000158
ORF10	23	S23S	tcT	tcA	1	2	B	0.000128
ORF10	23	S23S	tcT	tcC	1	2	B	0.000128
ORF10	23	S23Y	tCt	tAt	2	2	B.1	0.000018
ORF10	23	S23F	tCt	tTt	2	2	B.1.1.148	0.017544
ORF10	23	S23P	Tct	Cct	2	2	B.1.1.519	0.000079
ORF10	23	S23F	tCt	tTt	2	2	B.1.160.24	0.00885
ORF10	23	S23F	tCt	tTt	2	2	B.1.177.75	0.002081
ORF10	23	S23F	tCt	tTt	2	2	B.1.177.8	0.001505
ORF10	23	S23F	tCt	tTt	2	2	B.1.177.87	0.001456
ORF10	23	S23P	Tct	Cct	2	2	B.1.2	0.000018
ORF10	23	S23F	tCt	tTt	2	2	B.1.236	0.004107
ORF10	23	S23T	Tct	Act	2	2	B.1.240	0.000431
ORF10	23	S23F	tCt	tTt	2	2	B.1.258	0.000133
ORF10	23	S23S	tcT	tcC	2	2	B.1.311	0.000549
ORF10	23	S23F	tCt	tTt	2	2	B.1.349	0.00143
ORF10	23	S23F	tCt	tTt	2	2	B.1.396	0.001411
ORF10	23	S23S	tcT	tcC	2	2	B.1.400	0.000858
ORF10	23	S23P	Tct	Cct	2	2	B.1.429	0.000047
ORF10	23	S23S	tcT	tcC	2	2	B.1.525	0.000226
ORF10	23	S23P	Tct	Cct	2	2	B.1.526	0.000047
ORF10	23	S23S	tcT	tcC	2	2	B.1.551	0.002581
ORF10	23	S23F	tCt	tTt	2	2	B.1.561	0.000794
ORF10	23	S23S	tcT	tcC	2	2	B.1.596	0.000174
ORF10	23	S23S	tcT	tcC	2	2	B.1.600	0.011696
ORF10	23	S23P	Tct	Cct	2	2	B.1.621	0.000177
ORF10	23	S23F	tCt	tTt	2	2	B.1.637	0.000146
ORF10	23	S23F	tCt	tTt	2	2	B.61	0.011494
ORF10	23	S23F	tCt	tTt	2	2	C.36.3	0.001134
ORF10	23	S23S	tcT	tcG	2	2	C.36.3	0.001134
ORF10	23	S23T	Tct	Act	2	2	C.37	0.000232
ORF10	23	S23P	Tct	Cct	2	2	D.2	0.00015
ORF10	23	S23P	Tct	Cct	2	2	P.1	0.000032
ORF10	23	S23del	TCT	---	2	2	P.1	0.000032
ORF10	23	S23F	tCt	tTt	2	2	P.1.12	0.000968
ORF10	23	S23Y	tCt	tAt	1	1	A	0.000387
ORF10	23	S23F	tCt	tTt	1	1	A	0.000387
ORF10	23	S23del	TCT	---	1	1	A.1	0.000282
ORF10	23	S23S	tcT	tcG	1	1	A.2.2	0.001689
ORF10	23	S23F	tCt	tTt	1	1	A.2.3	0.004739
ORF10	23	S23F	tCt	tTt	1	1	A.27	0.001656
ORF10	23	S23F	tCt	tTt	1	1	AE.1	0.011364
ORF10	23	S23R	TCT	AGA	1	1	All	0
ORF10	23	S23S	tcT	tcC	1	1	AY.100	0.000046
ORF10	23	S23P	Tct	Cct	1	1	AY.100	0.000046
ORF10	23	S23F	tCt	tTt	1	1	AY.101	0.00049
ORF10	23	S23S	tcT	tcG	1	1	AY.102	0.000027
ORF10	23	S23A	Tct	Gct	1	1	AY.103	0.000006
ORF10	23	S23T	Tct	Act	1	1	AY.103	0.000006
ORF10	23	S23F	tCt	tTt	1	1	AY.106	0.000335
ORF10	23	S23S	tcT	tcG	1	1	AY.11	0.001339
ORF10	23	S23P	Tct	Cct	1	1	AY.113	0.000142
ORF10	23	S23S	tcT	tcG	1	1	AY.116	0.000287
ORF10	23	S23S	tcT	tcC	1	1	AY.118	0.000063
ORF10	23	S23P	Tct	Cct	1	1	AY.119	0.000035
ORF10	23	S23del	TCT	---	1	1	AY.120.1	0.000321
ORF10	23	S23F	tCt	tTt	1	1	AY.13	0.000161
ORF10	23	S23P	Tct	Cct	1	1	AY.14	0.000088
ORF10	23	S23F	tCt	tTt	1	1	AY.16	0.00038
ORF10	23	S23F	tCt	tTt	1	1	AY.19	0.00114
ORF10	23	S23S	tcT	tcC	1	1	AY.23	0.00007
ORF10	23	S23P	Tct	Cct	1	1	AY.26	0.000028
ORF10	23	S23P	Tct	Cct	1	1	AY.29	0.000016
ORF10	23	S23T	Tct	Act	1	1	AY.29.1	0.000221
ORF10	23	S23del	TCT	---	1	1	AY.3	0.00001
ORF10	23	S23P	Tct	Cct	1	1	AY.3.1	0.000085
ORF10	23	S23F	tCt	tTt	1	1	AY.30	0.000396
ORF10	23	S23S	tcT	tcG	1	1	AY.34	0.000097
ORF10	23	S23P	Tct	Cct	1	1	AY.37	0.000316
ORF10	23	S23T	Tct	Act	1	1	AY.39.1	0.00004
ORF10	23	S23Y	tCt	tAt	1	1	AY.4	0.000002
ORF10	23	S23F	tCt	tTt	1	1	AY.4.1	0.000737
ORF10	23	S23S	tcT	tcC	1	1	AY.4.2	0.000022
ORF10	23	S23F	tCt	tTt	1	1	AY.4.4	0.000409
ORF10	23	S23S	tcT	tcC	1	1	AY.4.5	0.000107
ORF10	23	S23F	tCt	tTt	1	1	AY.40	0.000964
ORF10	23	S23C	tCt	tGt	1	1	AY.43	0.000004
ORF10	23	S23T	Tct	Act	1	1	AY.44	0.000006
ORF10	23	S23P	Tct	Cct	1	1	AY.46	0.000104
ORF10	23	S23F	tCt	tTt	1	1	AY.46.1	0.001027
ORF10	23	S23del	TCT	---	1	1	AY.46.6	0.000072
ORF10	23	S23S	tcT	tcA	1	1	AY.5	0.000021
ORF10	23	S23P	TcT	CcG	1	1	AY.53	0.000288
ORF10	23	S23P	Tct	Cct	1	1	AY.59	0.00053
ORF10	23	S23A	Tct	Gct	1	1	AY.61	0.000105
ORF10	23	S23del	TCT	---	1	1	AY.62	0.000436
ORF10	23	S23del	TCT	---	1	1	AY.65	0.000533
ORF10	23	S23F	tCt	tTt	1	1	AY.65	0.000533
ORF10	23	S23S	tcT	tcC	1	1	AY.7.1	0.000113
ORF10	23	S23A	Tct	Gct	1	1	AY.7.1	0.000113
ORF10	23	S23F	tCt	tTt	1	1	AY.73	0.000665
ORF10	23	S23P	Tct	Cct	1	1	AY.75	0.000056
ORF10	23	S23S	tcT	tcG	1	1	AY.75.1	0.00018
ORF10	23	S23F	tCt	tTt	1	1	AY.76	0.004831
ORF10	23	S23A	Tct	Gct	1	1	AY.9.1	0.000084
ORF10	23	S23F	tCt	tTt	1	1	AY.91	0.00073
ORF10	23	S23S	tcT	tcC	1	1	AY.91	0.00073
ORF10	23	S23S	tcT	tcC	1	1	AY.98.1	0.000048
ORF10	23	S23P	Tct	Cct	1	1	B	0.000128
ORF10	23	S23C	tCT	tGC	1	1	B.1	0.000009
ORF10	23	S23T	Tct	Act	1	1	B.1	0.000009
ORF10	23	S23del	TCT	---	1	1	B.1.1	0.000018
ORF10	23	S23S	tcT	tcG	1	1	B.1.1.1	0.000327
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.101	0.01
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.12	0.007463
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.176	0.000439
ORF10	23	S23P	Tct	Cct	1	1	B.1.1.189	0.001513
ORF10	23	S23S	tcT	tcC	1	1	B.1.1.207	0.001182
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.214	0.000055
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.216	0.00089
ORF10	23	S23S	tcT	tcC	1	1	B.1.1.222	0.000204
ORF10	23	S23P	Tct	Cct	1	1	B.1.1.27	0.00565
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.277	0.000759
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.28	0.000311
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.312	0.001912
ORF10	23	S23S	tcT	tcC	1	1	B.1.1.316	0.000925
ORF10	23	S23S	tcT	tcC	1	1	B.1.1.326	0.001761
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.33	0.000421
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.348	0.000796
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.372	0.000689
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.39	0.00051
ORF10	23	S23P	Tct	Cct	1	1	B.1.1.39	0.00051
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.406	0.006494
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.44	0.00241
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.45	0.014085
ORF10	23	S23S	tcT	tcC	1	1	B.1.1.517	0.006803
ORF10	23	S23S	tcT	tcC	1	1	B.1.1.518	0.006329
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.63	0.000386
ORF10	23	S23del	TCT	---	1	1	B.1.1.7	0.000001
ORF10	23	S23F	tCt	tTt	1	1	B.1.1.70	0.000341
ORF10	23	S23S	tcT	tcC	1	1	B.1.126	0.001276
ORF10	23	S23F	tCt	tTt	1	1	B.1.142	0.002899
ORF10	23	S23S	tcT	tcC	1	1	B.1.160	0.000031
ORF10	23	S23F	tCt	tTt	1	1	B.1.160.12	0.00641
ORF10	23	S23F	tCt	tTt	1	1	B.1.160.16	0.000929
ORF10	23	S23del	TCT	---	1	1	B.1.177	0.000013
ORF10	23	S23A	Tct	Gct	1	1	B.1.177	0.000013
ORF10	23	S23F	tCt	tTt	1	1	B.1.177.19	0.001431
ORF10	23	S23F	tCt	tTt	1	1	B.1.177.7	0.000165
ORF10	23	S23F	tCt	tTt	1	1	B.1.177.73	0.000566
ORF10	23	S23S	tcT	tcA	1	1	B.1.177.86	0.000183
ORF10	23	S23F	tCt	tTt	1	1	B.1.206	0.000816
ORF10	23	S23P	Tct	Cct	1	1	B.1.206	0.000816
ORF10	23	S23C	tCt	tGt	1	1	B.1.22	0.001318
ORF10	23	S23P	Tct	Cct	1	1	B.1.243	0.00007
ORF10	23	S23F	tCt	tTt	1	1	B.1.243	0.00007
ORF10	23	S23del	TCT	---	1	1	B.1.258.16	0.001637
ORF10	23	S23S	tcT	tcC	1	1	B.1.324	0.001605
ORF10	23	S23F	tCt	tTt	1	1	B.1.338	0.008621
ORF10	23	S23S	tcT	tcC	1	1	B.1.351	0.00003
ORF10	23	S23F	tCt	tTt	1	1	B.1.351.3	0.000876
ORF10	23	S23S	tcT	tcC	1	1	B.1.356	0.001727
ORF10	23	S23F	tCt	tTt	1	1	B.1.36	0.000146
ORF10	23	S23F	tCt	tTt	1	1	B.1.36.18	0.00042
ORF10	23	S23P	Tct	Cct	1	1	B.1.36.29	0.000517
ORF10	23	S23F	tCt	tTt	1	1	B.1.361	0.001289
ORF10	23	S23F	tCt	tTt	1	1	B.1.367	0.000792
ORF10	23	S23F	tCt	tTt	1	1	B.1.389	0.001002
ORF10	23	S23F	tCt	tTt	1	1	B.1.391	0.001127
ORF10	23	S23F	tCt	tTt	1	1	B.1.393	0.028571
ORF10	23	S23S	tcT	tcC	1	1	B.1.403	0.003268
ORF10	23	S23S	tcT	tcC	1	1	B.1.404	0.001302
ORF10	23	S23S	tcT	tcC	1	1	B.1.411	0.003704
ORF10	23	S23P	Tct	Cct	1	1	B.1.427	0.00005
ORF10	23	S23S	tcT	tcC	1	1	B.1.429.1	0.012048
ORF10	23	S23del	TCT	---	1	1	B.1.438.1	0.000107
ORF10	23	S23F	tCt	tTt	1	1	B.1.456	0.003268
ORF10	23	S23A	Tct	Gct	1	1	B.1.466.2	0.000391
ORF10	23	S23F	tCt	tTt	1	1	B.1.469	0.00361
ORF10	23	S23F	tCt	tTt	1	1	B.1.475	0.142857
ORF10	23	S23R	TCT	AGA	1	1	B.1.497	0.000315
ORF10	23	S23F	tCt	tTt	1	1	B.1.538	0.008065
ORF10	23	S23F	tCt	tTt	1	1	B.1.545	0.014493
ORF10	23	S23S	tcT	tcC	1	1	B.1.554	0.004405
ORF10	23	S23S	tcT	tcC	1	1	B.1.565	0.00081
ORF10	23	S23F	tCt	tTt	1	1	B.1.575	0.000303
ORF10	23	S23del	TCT	---	1	1	B.1.576	0.000907
ORF10	23	S23del	TCT	---	1	1	B.1.582	0.000491
ORF10	23	S23S	tcT	tcC	1	1	B.1.595	0.000261
ORF10	23	S23F	tCt	tTt	1	1	B.1.603	0.010638
ORF10	23	S23F	tCt	tTt	1	1	B.1.609	0.000479
ORF10	23	S23del	TCT	---	1	1	B.1.617.2	0.000004
ORF10	23	S23F	tCt	tTt	1	1	B.1.617.3	0.002985
ORF10	23	S23F	tCt	tTt	1	1	B.1.619.1	0.000641
ORF10	23	S23F	tCt	tTt	1	1	B.1.620	0.000946
ORF10	23	S23S	tcT	tcC	1	1	B.1.621	0.000089
ORF10	23	S23F	tCt	tTt	1	1	B.1.623	0.000536
ORF10	23	S23F	tCt	tTt	1	1	B.10	0.008264
ORF10	23	S23F	tCt	tTt	1	1	B.19	0.037037
ORF10	23	S23P	Tct	Cct	1	1	B.4	0.002208
ORF10	23	S23F	tCt	tTt	1	1	B.4	0.002208
ORF10	23	S23F	tCt	tTt	1	1	B.4.4	0.018868
ORF10	23	S23F	tCt	tTt	1	1	B.40	0.000364
ORF10	23	S23F	tCt	tTt	1	1	B.45	0.003831
ORF10	23	S23F	tCt	tTt	1	1	C.1	0.002392
ORF10	23	S23S	tcT	tcC	1	1	C.36	0.000911
ORF10	23	S23F	tCt	tTt	1	1	C.36.1	0.004149
ORF10	23	S23F	tCt	tTt	1	1	C.36.3.1	0.002717
ORF10	23	S23del	TCT	---	1	1	C.37	0.000116
ORF10	23	S23F	tCt	tTt	1	1	N.5	0.001767
ORF10	23	S23S	tcT	tcC	1	1	P.1	0.000016
ORF10	23	S23F	tCt	tTt	1	1	P.1.1	0.000318
ORF10	23	S23P	Tct	Cct	1	1	P.1.12	0.000484
ORF10	23	S23T	Tct	Act	1	1	P.1.15	0.000232
ORF10	23	S23F	tCt	tTt	1	1	P.1.15	0.000232
ORF10	23	S23del	TCT	---	1	1	P.1.17	0.000162
ORF10	23	S23F	tCt	tTt	1	1	P.1.17	0.000162
ORF10	23	S23F	tCt	tTt	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.