CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF10 | 19 | C19C | syn | tgC | tgT | 27710 | 27710 | 1 | 29612-29614 | |
ORF10 | 19 | C19R | nonsyn | Tgc | Cgc | 78 | 78 | 1 | 29612-29614 | |
ORF10 | 19 | C19F | nonsyn | tGc | tTc | 73 | 72 | 0.986301 | 29612-29614 | |
ORF10 | 19 | C19F | nonsyn | tGC | tTT | 73 | 1 | 0.0136986 | 29612-29614 | |
ORF10 | 19 | C19del | del | TGC | --- | 25 | 25 | 1 | 29612-29614 | |
ORF10 | 19 | C19Y | nonsyn | tGc | tAc | 19 | 19 | 1 | 29612-29614 | |
ORF10 | 19 | C19X | nonsyn | tgC | tgA | 15 | 15 | 1 | 29612-29614 | |
ORF10 | 19 | C19S | nonsyn | tGc | tCc | 9 | 5 | 0.555556 | 29612-29614 | |
ORF10 | 19 | C19S | nonsyn | Tgc | Agc | 9 | 4 | 0.444444 | 29612-29614 | |
ORF10 | 19 | C19del1 | del | tgC | tg- | 6 | 3 | 0.5 | 29612-29614 | |
ORF10 | 19 | C19del1 | del | tGc | t-c | 6 | 1 | 0.166667 | 29612-29614 | |
ORF10 | 19 | C19del1 | del | TgC | -gT | 6 | 1 | 0.166667 | 29612-29614 | |
ORF10 | 19 | C19del1 | del | tGC | t-T | 6 | 1 | 0.166667 | 29612-29614 | |
ORF10 | 19 | C19W | nonsyn | tgC | tgG | 4 | 4 | 1 | 29612-29614 | |
ORF10 | 19 | C19G | nonsyn | Tgc | Ggc | 3 | 2 | 0.666667 | 29612-29614 | |
ORF10 | 19 | C19G | nonsyn | TgC | GgA | 3 | 1 | 0.333333 | 29612-29614 | |
ORF10 | 19 | C19T | nonsyn | TGC | ACG | 2 | 2 | 1 | 29612-29614 | |
ORF10 | 19 | C19V | nonsyn | TGC | GTG | 1 | 1 | 1 | 29612-29614 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF10 | 19 | C19C | tgC | tgT | 27710 | 27710 | All | 0.0053 |
ORF10 | 19 | C19C | tgC | tgT | 8627 | 8627 | B.1.1.7 | 0.007723 |
ORF10 | 19 | C19C | tgC | tgT | 1677 | 1677 | AY.4 | 0.00261 |
ORF10 | 19 | C19C | tgC | tgT | 1412 | 1412 | AY.3 | 0.014044 |
ORF10 | 19 | C19C | tgC | tgT | 1356 | 1356 | B.1.1.214 | 0.0752 |
ORF10 | 19 | C19C | tgC | tgT | 1143 | 1143 | B.1.617.2 | 0.004304 |
ORF10 | 19 | C19C | tgC | tgT | 977 | 977 | B.1.2 | 0.008603 |
ORF10 | 19 | C19C | tgC | tgT | 922 | 922 | AY.44 | 0.005612 |
ORF10 | 19 | C19C | tgC | tgT | 720 | 720 | AY.103 | 0.004471 |
ORF10 | 19 | C19C | tgC | tgT | 564 | 564 | AY.25 | 0.003392 |
ORF10 | 19 | C19C | tgC | tgT | 564 | 564 | AY.43 | 0.002499 |
ORF10 | 19 | C19C | tgC | tgT | 440 | 440 | B.1 | 0.00403 |
ORF10 | 19 | C19C | tgC | tgT | 428 | 428 | B.1.351 | 0.012723 |
ORF10 | 19 | C19C | tgC | tgT | 414 | 414 | AY.39 | 0.010231 |
ORF10 | 19 | C19C | tgC | tgT | 404 | 404 | B.1.575.1 | 0.985366 |
ORF10 | 19 | C19C | tgC | tgT | 294 | 294 | B.1.427 | 0.014846 |
ORF10 | 19 | C19C | tgC | tgT | 268 | 268 | AY.74 | 0.030993 |
ORF10 | 19 | C19C | tgC | tgT | 266 | 266 | B.1.429 | 0.006259 |
ORF10 | 19 | C19C | tgC | tgT | 248 | 248 | P.1 | 0.003907 |
ORF10 | 19 | C19C | tgC | tgT | 240 | 240 | B.1.1 | 0.004354 |
ORF10 | 19 | C19C | tgC | tgT | 239 | 239 | AY.3.1 | 0.020377 |
ORF10 | 19 | C19C | tgC | tgT | 228 | 228 | AY.5 | 0.004708 |
ORF10 | 19 | C19C | tgC | tgT | 225 | 225 | B.1.1.318 | 0.067894 |
ORF10 | 19 | C19C | tgC | tgT | 186 | 186 | AY.120 | 0.006915 |
ORF10 | 19 | C19C | tgC | tgT | 172 | 172 | B.1.306 | 0.982857 |
ORF10 | 19 | C19C | tgC | tgT | 171 | 171 | AY.102 | 0.004534 |
ORF10 | 19 | C19C | tgC | tgT | 148 | 148 | AY.114 | 0.034204 |
ORF10 | 19 | C19C | tgC | tgT | 139 | 139 | B.1.177.65 | 0.092482 |
ORF10 | 19 | C19C | tgC | tgT | 138 | 138 | B.1.160 | 0.004304 |
ORF10 | 19 | C19C | tgC | tgT | 130 | 130 | AY.26 | 0.00368 |
ORF10 | 19 | C19C | tgC | tgT | 125 | 125 | AY.4.2 | 0.002711 |
ORF10 | 19 | C19C | tgC | tgT | 124 | 124 | AY.47 | 0.003857 |
ORF10 | 19 | C19C | tgC | tgT | 123 | 123 | AY.9.1 | 0.010298 |
ORF10 | 19 | C19C | tgC | tgT | 118 | 118 | B.1.111 | 0.13866 |
ORF10 | 19 | C19C | tgC | tgT | 107 | 107 | B.1.438.1 | 0.011477 |
ORF10 | 19 | C19C | tgC | tgT | 101 | 101 | B.1.36.19 | 0.935185 |
ORF10 | 19 | C19C | tgC | tgT | 96 | 96 | B.1.258 | 0.006389 |
ORF10 | 19 | C19C | tgC | tgT | 94 | 94 | B.1.591 | 1 |
ORF10 | 19 | C19C | tgC | tgT | 92 | 92 | B.1.499 | 0.096639 |
ORF10 | 19 | C19C | tgC | tgT | 79 | 79 | AY.36 | 0.011709 |
ORF10 | 19 | C19R | Tgc | Cgc | 78 | 78 | All | 0.000015 |
ORF10 | 19 | C19C | tgC | tgT | 77 | 77 | B.1.221 | 0.00547 |
ORF10 | 19 | C19F | tGc | tTc | 72 | 73 | All | 0.000014 |
ORF10 | 19 | C19F | tGC | tTT | 1 | 73 | All | 0 |
ORF10 | 19 | C19C | tgC | tgT | 73 | 73 | AY.119 | 0.002578 |
ORF10 | 19 | C19C | tgC | tgT | 72 | 72 | B.1.526 | 0.001692 |
ORF10 | 19 | C19C | tgC | tgT | 71 | 71 | AY.14 | 0.006249 |
ORF10 | 19 | C19C | tgC | tgT | 71 | 71 | B.1.637 | 0.005188 |
ORF10 | 19 | C19C | tgC | tgT | 69 | 69 | AY.100 | 0.003174 |
ORF10 | 19 | C19C | tgC | tgT | 68 | 68 | AY.20 | 0.002643 |
ORF10 | 19 | C19C | tgC | tgT | 66 | 66 | AY.42 | 0.002655 |
ORF10 | 19 | C19C | tgC | tgT | 65 | 65 | B.1.1.519 | 0.002581 |
ORF10 | 19 | C19C | tgC | tgT | 62 | 62 | B.1.1.37 | 0.011958 |
ORF10 | 19 | C19C | tgC | tgT | 60 | 60 | B.1.1.266 | 0.731707 |
ORF10 | 19 | C19C | tgC | tgT | 60 | 60 | B.1.188 | 1 |
ORF10 | 19 | C19C | tgC | tgT | 58 | 58 | B.1.177 | 0.000764 |
ORF10 | 19 | C19C | tgC | tgT | 57 | 57 | B.28 | 0.186885 |
ORF10 | 19 | C19C | tgC | tgT | 55 | 55 | AY.46.4 | 0.009048 |
ORF10 | 19 | C19C | tgC | tgT | 54 | 54 | B.1.577 | 0.037113 |
ORF10 | 19 | C19C | tgC | tgT | 53 | 53 | B.1.596 | 0.004618 |
ORF10 | 19 | C19C | tgC | tgT | 50 | 50 | B.1.243 | 0.003479 |
ORF10 | 19 | C19C | tgC | tgT | 49 | 49 | AY.29 | 0.000773 |
ORF10 | 19 | C19C | tgC | tgT | 48 | 48 | P.2 | 0.008959 |
ORF10 | 19 | C19C | tgC | tgT | 46 | 46 | AY.9 | 0.003109 |
ORF10 | 19 | C19C | tgC | tgT | 45 | 45 | AY.33 | 0.003005 |
ORF10 | 19 | C19C | tgC | tgT | 45 | 45 | B.1.628 | 0.015856 |
ORF10 | 19 | C19C | tgC | tgT | 45 | 45 | P.1.14 | 0.002151 |
ORF10 | 19 | C19C | tgC | tgT | 44 | 44 | AY.46.6 | 0.003177 |
ORF10 | 19 | C19C | tgC | tgT | 43 | 43 | B.1.1.222 | 0.008772 |
ORF10 | 19 | C19C | tgC | tgT | 41 | 41 | B.1.621 | 0.003629 |
ORF10 | 19 | C19C | tgC | tgT | 40 | 40 | AY.98 | 0.00316 |
ORF10 | 19 | C19C | tgC | tgT | 40 | 40 | B.1.575 | 0.012136 |
ORF10 | 19 | C19C | tgC | tgT | 38 | 38 | AY.117 | 0.003212 |
ORF10 | 19 | C19C | tgC | tgT | 38 | 38 | AY.71 | 0.018052 |
ORF10 | 19 | C19C | tgC | tgT | 38 | 38 | B.1.1.157 | 0.034703 |
ORF10 | 19 | C19C | tgC | tgT | 37 | 37 | AY.118 | 0.002318 |
ORF10 | 19 | C19C | tgC | tgT | 37 | 37 | B.1.206 | 0.030179 |
ORF10 | 19 | C19C | tgC | tgT | 36 | 36 | AY.46.3 | 0.033613 |
ORF10 | 19 | C19C | tgC | tgT | 36 | 36 | B.1.619 | 0.031359 |
ORF10 | 19 | C19C | tgC | tgT | 35 | 35 | AY.75 | 0.001961 |
ORF10 | 19 | C19C | tgC | tgT | 35 | 35 | B.1.36 | 0.005107 |
ORF10 | 19 | C19C | tgC | tgT | 34 | 34 | AY.46 | 0.003539 |
ORF10 | 19 | C19C | tgC | tgT | 30 | 30 | AY.23 | 0.002092 |
ORF10 | 19 | C19C | tgC | tgT | 30 | 30 | AY.32 | 0.015974 |
ORF10 | 19 | C19C | tgC | tgT | 30 | 30 | D.2 | 0.002251 |
ORF10 | 19 | C19C | tgC | tgT | 29 | 29 | P.1.7 | 0.009259 |
ORF10 | 19 | C19C | tgC | tgT | 28 | 28 | A.21 | 0.077562 |
ORF10 | 19 | C19C | tgC | tgT | 28 | 28 | AY.5.3 | 0.009447 |
ORF10 | 19 | C19C | tgC | tgT | 28 | 28 | B.1.22 | 0.036891 |
ORF10 | 19 | C19C | tgC | tgT | 27 | 27 | AY.98.1 | 0.001308 |
ORF10 | 19 | C19C | tgC | tgT | 27 | 27 | B.1.258.17 | 0.002807 |
ORF10 | 19 | C19C | tgC | tgT | 27 | 27 | B.1.585 | 0.75 |
ORF10 | 19 | C19C | tgC | tgT | 26 | 26 | B.1.36.36 | 0.015653 |
ORF10 | 19 | C19del | TGC | --- | 25 | 25 | All | 0.000005 |
ORF10 | 19 | C19C | tgC | tgT | 25 | 25 | AY.46.2 | 0.015883 |
ORF10 | 19 | C19C | tgC | tgT | 24 | 24 | AY.61 | 0.002515 |
ORF10 | 19 | C19C | tgC | tgT | 24 | 24 | C.37 | 0.002786 |
ORF10 | 19 | C19C | tgC | tgT | 22 | 22 | AY.29.1 | 0.004851 |
ORF10 | 19 | C19C | tgC | tgT | 22 | 22 | AY.99.2 | 0.002027 |
ORF10 | 19 | C19C | tgC | tgT | 22 | 22 | P.1.15 | 0.005112 |
ORF10 | 19 | C19C | tgC | tgT | 21 | 21 | AY.6 | 0.000864 |
ORF10 | 19 | C19C | tgC | tgT | 21 | 21 | B.1.177.21 | 0.001606 |
ORF10 | 19 | C19C | tgC | tgT | 20 | 20 | AY.1 | 0.007915 |
ORF10 | 19 | C19C | tgC | tgT | 20 | 20 | AY.4.5 | 0.00215 |
ORF10 | 19 | C19C | tgC | tgT | 20 | 20 | B.1.1.28 | 0.006225 |
ORF10 | 19 | C19Y | tGc | tAc | 19 | 19 | All | 0.000004 |
ORF10 | 19 | C19C | tgC | tgT | 19 | 19 | AY.45 | 0.002312 |
ORF10 | 19 | C19C | tgC | tgT | 18 | 18 | A | 0.006966 |
ORF10 | 19 | C19C | tgC | tgT | 18 | 18 | B.1.1.337 | 0.064748 |
ORF10 | 19 | C19C | tgC | tgT | 18 | 18 | B.1.234 | 0.002375 |
ORF10 | 19 | C19C | tgC | tgT | 18 | 18 | B.1.636 | 0.120805 |
ORF10 | 19 | C19C | tgC | tgT | 17 | 17 | AY.9.2 | 0.000624 |
ORF10 | 19 | C19C | tgC | tgT | 17 | 17 | B.1.177.77 | 0.012346 |
ORF10 | 19 | C19F | tGc | tTc | 16 | 16 | AY.4 | 0.000025 |
ORF10 | 19 | C19C | tgC | tgT | 16 | 16 | Q.8 | 0.002639 |
ORF10 | 19 | C19X | tgC | tgA | 15 | 15 | All | 0.000003 |
ORF10 | 19 | C19C | tgC | tgT | 15 | 15 | AY.121 | 0.00203 |
ORF10 | 19 | C19C | tgC | tgT | 15 | 15 | AY.34 | 0.001454 |
ORF10 | 19 | C19C | tgC | tgT | 15 | 15 | B.1.1.63 | 0.005787 |
ORF10 | 19 | C19C | tgC | tgT | 15 | 15 | B.1.551 | 0.019355 |
ORF10 | 19 | C19C | tgC | tgT | 15 | 15 | B.1.617.1 | 0.001934 |
ORF10 | 19 | C19C | tgC | tgT | 14 | 14 | AY.10 | 0.007419 |
ORF10 | 19 | C19C | tgC | tgT | 14 | 14 | AY.16.1 | 0.006579 |
ORF10 | 19 | C19C | tgC | tgT | 14 | 14 | B.1.599 | 0.051095 |
ORF10 | 19 | C19R | Tgc | Cgc | 13 | 13 | AY.103 | 0.000081 |
ORF10 | 19 | C19C | tgC | tgT | 13 | 13 | AY.92 | 0.003735 |
ORF10 | 19 | C19C | tgC | tgT | 13 | 13 | B.1.1.267 | 0.131313 |
ORF10 | 19 | C19C | tgC | tgT | 13 | 13 | B.1.36.20 | 0.220339 |
ORF10 | 19 | C19C | tgC | tgT | 12 | 12 | A.2.5 | 0.005988 |
ORF10 | 19 | C19C | tgC | tgT | 12 | 12 | B | 0.001534 |
ORF10 | 19 | C19C | tgC | tgT | 12 | 12 | B.1.36.34 | 0.255319 |
ORF10 | 19 | C19C | tgC | tgT | 12 | 12 | B.1.595 | 0.003132 |
ORF10 | 19 | C19C | tgC | tgT | 12 | 12 | Q.1 | 0.001516 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | AY.113 | 0.001566 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | AY.5.4 | 0.003044 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | B.1.1.1 | 0.003594 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | B.1.1.216 | 0.009795 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | B.1.399 | 0.021277 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | B.1.409 | 0.008594 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | B.1.413 | 0.046809 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | B.1.415 | 0.157143 |
ORF10 | 19 | C19C | tgC | tgT | 11 | 11 | B.1.609 | 0.005273 |
ORF10 | 19 | C19C | tgC | tgT | 10 | 10 | AY.4.3 | 0.008418 |
ORF10 | 19 | C19C | tgC | tgT | 10 | 10 | AY.75.1 | 0.001803 |
ORF10 | 19 | C19C | tgC | tgT | 10 | 10 | AY.88 | 0.008842 |
ORF10 | 19 | C19C | tgC | tgT | 10 | 10 | B.1.1.362 | 0.05618 |
ORF10 | 19 | C19C | tgC | tgT | 10 | 10 | B.1.1.70 | 0.003411 |
ORF10 | 19 | C19C | tgC | tgT | 10 | 10 | B.1.466.2 | 0.003912 |
ORF10 | 19 | C19C | tgC | tgT | 10 | 10 | R.1 | 0.0009 |
ORF10 | 19 | C19S | tGc | tCc | 5 | 9 | All | 0.000001 |
ORF10 | 19 | C19S | Tgc | Agc | 4 | 9 | All | 0.000001 |
ORF10 | 19 | C19Y | tGc | tAc | 9 | 9 | AY.119 | 0.000318 |
ORF10 | 19 | C19C | tgC | tgT | 9 | 9 | AY.13 | 0.001449 |
ORF10 | 19 | C19R | Tgc | Cgc | 9 | 9 | AY.39 | 0.000222 |
ORF10 | 19 | C19C | tgC | tgT | 9 | 9 | B.1.369 | 0.002567 |
ORF10 | 19 | C19C | tgC | tgT | 8 | 8 | AY.109 | 0.005917 |
ORF10 | 19 | C19C | tgC | tgT | 8 | 8 | AY.39.1 | 0.000317 |
ORF10 | 19 | C19C | tgC | tgT | 8 | 8 | AY.67 | 0.003714 |
ORF10 | 19 | C19C | tgC | tgT | 8 | 8 | B.1.1.374 | 0.019002 |
ORF10 | 19 | C19C | tgC | tgT | 8 | 8 | B.1.311 | 0.002197 |
ORF10 | 19 | C19C | tgC | tgT | 8 | 8 | B.1.561 | 0.003176 |
ORF10 | 19 | C19C | tgC | tgT | 8 | 8 | B.1.627 | 0.016162 |
ORF10 | 19 | C19C | tgC | tgT | 8 | 8 | P.1.10.1 | 0.065041 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | AY.108 | 0.007718 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | AY.116.1 | 0.00218 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | AY.27 | 0.000453 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | AY.34.1 | 0.00357 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | AY.35 | 0.001631 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | AY.54 | 0.000667 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | AY.69 | 0.001307 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | B.1.1.231 | 0.021672 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | B.1.1.306 | 0.003069 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | B.1.1.397 | 0.015766 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | B.1.324 | 0.011236 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | B.1.429.1 | 0.084337 |
ORF10 | 19 | C19R | Tgc | Cgc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF10 | 19 | C19C | tgC | tgT | 7 | 7 | C.36.3 | 0.003971 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | A.2.5.2 | 0.009434 |
ORF10 | 19 | C19del1 | tgC | tg- | 3 | 6 | All | 0.000001 |
ORF10 | 19 | C19del1 | tGC | t-T | 1 | 6 | All | 0 |
ORF10 | 19 | C19del1 | TgC | -gT | 1 | 6 | All | 0 |
ORF10 | 19 | C19del1 | tGc | t-c | 1 | 6 | All | 0 |
ORF10 | 19 | C19R | Tgc | Cgc | 6 | 6 | AY.4 | 0.000009 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | AY.55 | 0.005505 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | AY.94 | 0.002656 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.1.291 | 0.004454 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.1.307 | 0.01519 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF10 | 19 | C19R | Tgc | Cgc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF10 | 19 | C19F | tGc | tTc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.177.36 | 0.096774 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.425 | 0.017964 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.497 | 0.001889 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.623 | 0.003219 |
ORF10 | 19 | C19C | tgC | tgT | 6 | 6 | P.1.17 | 0.000971 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | AY.106 | 0.001674 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | AY.110 | 0.000563 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | AY.111 | 0.000916 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | AY.120.2 | 0.006427 |
ORF10 | 19 | C19R | Tgc | Cgc | 5 | 5 | AY.26 | 0.000142 |
ORF10 | 19 | C19X | tgC | tgA | 5 | 5 | AY.4.2 | 0.000108 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | AY.64 | 0.002976 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.1.372 | 0.003444 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.177.57 | 0.001405 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.177.73 | 0.002831 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.232 | 0.002687 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.240 | 0.001078 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.301 | 0.029586 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.349 | 0.003574 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.36.18 | 0.002101 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.36.29 | 0.002587 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.582 | 0.002453 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.588 | 0.00455 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.597 | 0.023148 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.621.1 | 0.002529 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | B.6 | 0.00455 |
ORF10 | 19 | C19C | tgC | tgT | 5 | 5 | Q.3 | 0.000725 |
ORF10 | 19 | C19W | tgC | tgG | 4 | 4 | All | 0.000001 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.101 | 0.001962 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.107 | 0.001864 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.116 | 0.001147 |
ORF10 | 19 | C19R | Tgc | Cgc | 4 | 4 | AY.118 | 0.000251 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.16 | 0.001519 |
ORF10 | 19 | C19F | tGc | tTc | 4 | 4 | AY.25 | 0.000024 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.30 | 0.001583 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.41 | 0.001176 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.7 | 0.000784 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.77 | 0.00451 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.85 | 0.001709 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.89 | 0.019608 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.9.2.1 | 0.007905 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AY.91 | 0.002922 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | AZ.2 | 0.003284 |
ORF10 | 19 | C19F | tGc | tTc | 4 | 4 | B.1 | 0.000037 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.349 | 0.041237 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.39 | 0.002039 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.448 | 0.00813 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.516 | 0.266667 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.162 | 0.020101 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.182 | 0.028986 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.279 | 0.002054 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.396 | 0.002823 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.416 | 0.005076 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.466.1 | 0.028777 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.469 | 0.01444 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | B.3 | 0.003322 |
ORF10 | 19 | C19C | tgC | tgT | 4 | 4 | C.16 | 0.004242 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AD.2 | 0.000657 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AE.8 | 0.001467 |
ORF10 | 19 | C19G | Tgc | Ggc | 2 | 3 | All | 0 |
ORF10 | 19 | C19G | TgC | GgA | 1 | 3 | All | 0 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AY.105 | 0.001929 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AY.23.1 | 0.001252 |
ORF10 | 19 | C19del | TGC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AY.28 | 0.005671 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AY.39.2 | 0.004622 |
ORF10 | 19 | C19F | tGc | tTc | 3 | 3 | AY.44 | 0.000018 |
ORF10 | 19 | C19F | tGc | tTc | 3 | 3 | AY.5 | 0.000062 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AY.50 | 0.002398 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AY.59 | 0.001589 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AY.7.1 | 0.000338 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | AY.99 | 0.003148 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.133 | 0.025424 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.134 | 0.034091 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.189 | 0.004539 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.220 | 0.005576 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.241 | 0.006211 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.269 | 0.00406 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.277 | 0.002276 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.279 | 0.003363 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.3 | 0.026087 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.329 | 0.011538 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.376 | 0.017857 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.486 | 0.004732 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.139 | 0.002199 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.160.20 | 0.026786 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.160.30 | 0.008929 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.160.8 | 0.003866 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.166 | 0.025424 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.177.63 | 0.008108 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.356 | 0.005181 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.580 | 0.012195 |
ORF10 | 19 | C19F | tGc | tTc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.620 | 0.002838 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.12 | 0.019231 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | B.40 | 0.001093 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | N.5 | 0.0053 |
ORF10 | 19 | C19C | tgC | tgT | 3 | 3 | P.1.12 | 0.001452 |
ORF10 | 19 | C19T | TGC | ACG | 2 | 2 | All | 0 |
ORF10 | 19 | C19F | tGc | tTc | 2 | 2 | AY.23 | 0.000139 |
ORF10 | 19 | C19F | tGC | tTT | 1 | 2 | AY.3 | 0.00001 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 2 | AY.3 | 0.00001 |
ORF10 | 19 | C19R | Tgc | Cgc | 2 | 2 | AY.34.1 | 0.00102 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.38 | 0.000999 |
ORF10 | 19 | C19F | tGc | tTc | 2 | 2 | AY.43 | 0.000009 |
ORF10 | 19 | C19R | Tgc | Cgc | 2 | 2 | AY.43 | 0.000009 |
ORF10 | 19 | C19del | TGC | --- | 2 | 2 | AY.44 | 0.000012 |
ORF10 | 19 | C19S | tGc | tCc | 2 | 2 | AY.44 | 0.000012 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.57 | 0.001312 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.62 | 0.000871 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.65 | 0.001066 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.7.2 | 0.001119 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.70 | 0.000417 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.78 | 0.003082 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.79 | 0.002421 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.8 | 0.001212 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | AY.82 | 0.002714 |
ORF10 | 19 | C19F | tGc | tTc | 2 | 2 | AY.9.2 | 0.000073 |
ORF10 | 19 | C19del | TGC | --- | 2 | 2 | B.1 | 0.000018 |
ORF10 | 19 | C19X | tgC | tgA | 2 | 2 | B.1 | 0.000018 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.163 | 0.015267 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.301 | 0.002358 |
ORF10 | 19 | C19del1 | tGc | t-c | 1 | 2 | B.1.1.306 | 0.000438 |
ORF10 | 19 | C19del1 | tgC | tg- | 1 | 2 | B.1.1.306 | 0.000438 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.354 | 0.008772 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.429 | 0.009217 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.484 | 0.2 |
ORF10 | 19 | C19G | Tgc | Ggc | 2 | 2 | B.1.1.521 | 0.010695 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.72 | 0.060606 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.146 | 0.008475 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.147 | 0.001512 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.157 | 0.00597 |
ORF10 | 19 | C19F | tGc | tTc | 2 | 2 | B.1.177 | 0.000026 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.177.23 | 0.006472 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.177.43 | 0.002954 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.177.45 | 0.000762 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF10 | 19 | C19del | TGC | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.212 | 0.033333 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.223 | 0.005556 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.236 | 0.004107 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.237 | 0.00995 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.239 | 0.002442 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.241 | 0.001623 |
ORF10 | 19 | C19F | tGc | tTc | 2 | 2 | B.1.258 | 0.000133 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.258.3 | 0.00335 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.265 | 0.002541 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.284 | 0.026316 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.3 | 0.005236 |
ORF10 | 19 | C19S | Tgc | Agc | 2 | 2 | B.1.351 | 0.000059 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.367 | 0.001585 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.377 | 0.009132 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.400 | 0.000858 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.428.2 | 0.066667 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.459 | 0.008163 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.470 | 0.002809 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.517 | 0.000854 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.520 | 0.043478 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.558 | 0.009132 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.612 | 0.005305 |
ORF10 | 19 | C19Y | tGc | tAc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF10 | 19 | C19del1 | tgC | tg- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF10 | 19 | C19del1 | TgC | -gT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.619.1 | 0.001283 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | B.6.6 | 0.001778 |
ORF10 | 19 | C19del | TGC | --- | 2 | 2 | P.1 | 0.000032 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | Q.2 | 0.001227 |
ORF10 | 19 | C19X | tgC | tgA | 2 | 2 | Q.3 | 0.00029 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | W.2 | 0.009662 |
ORF10 | 19 | C19C | tgC | tgT | 2 | 2 | Z.1 | 0.00578 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | A.1 | 0.000282 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | A.1 | 0.000282 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | A.2 | 0.000662 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | A.2.5 | 0.000499 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | A.23 | 0.010526 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | A.3 | 0.002096 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | A.5 | 0.001923 |
ORF10 | 19 | C19V | TGC | GTG | 1 | 1 | All | 0 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AW.1 | 0.003049 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.102 | 0.000027 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.102 | 0.000027 |
ORF10 | 19 | C19X | tgC | tgA | 1 | 1 | AY.102 | 0.000027 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.103 | 0.000006 |
ORF10 | 19 | C19T | TGC | ACG | 1 | 1 | AY.103 | 0.000006 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.113 | 0.000142 |
ORF10 | 19 | C19X | tgC | tgA | 1 | 1 | AY.113 | 0.000142 |
ORF10 | 19 | C19X | tgC | tgA | 1 | 1 | AY.119 | 0.000035 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.12 | 0.000316 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.120.1 | 0.000321 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.13 | 0.000161 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.14 | 0.000088 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.16 | 0.00038 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.16.1 | 0.00047 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.20 | 0.000039 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.23 | 0.00007 |
ORF10 | 19 | C19Y | tGc | tAc | 1 | 1 | AY.23.1 | 0.000417 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.24 | 0.000431 |
ORF10 | 19 | C19W | tgC | tgG | 1 | 1 | AY.25 | 0.000006 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.25 | 0.000006 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.29 | 0.000016 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.3.1 | 0.000085 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.33 | 0.000067 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF10 | 19 | C19X | tgC | tgA | 1 | 1 | AY.4 | 0.000002 |
ORF10 | 19 | C19Y | tGc | tAc | 1 | 1 | AY.4 | 0.000002 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.40 | 0.000964 |
ORF10 | 19 | C19Y | tGc | tAc | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 19 | C19S | tGc | tCc | 1 | 1 | AY.43 | 0.000004 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.46.1 | 0.001027 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.46.4 | 0.000165 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.46.5 | 0.000198 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | AY.47 | 0.000031 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.5 | 0.000021 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.51 | 0.000909 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.53 | 0.000288 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.56 | 0.001605 |
ORF10 | 19 | C19T | TGC | ACG | 1 | 1 | AY.59 | 0.00053 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF10 | 19 | C19Y | tGc | tAc | 1 | 1 | AY.67 | 0.000464 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.68 | 0.000274 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.70 | 0.000209 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.72 | 0.001361 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | AY.75 | 0.000056 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.75 | 0.000056 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.81 | 0.001992 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.84 | 0.000437 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.87 | 0.000833 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.88 | 0.000884 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.90 | 0.000684 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.95 | 0.000761 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AY.96 | 0.002075 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | AY.98 | 0.000079 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AZ.1 | 0.000867 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | AZ.3 | 0.00152 |
ORF10 | 19 | C19W | tgC | tgG | 1 | 1 | B.1 | 0.000009 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1 | 0.000009 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 19 | C19S | Tgc | Agc | 1 | 1 | B.1.1 | 0.000018 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.101 | 0.01 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF10 | 19 | C19del1 | tgC | tg- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.1.161 | 0.003534 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.201 | 0.02439 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF10 | 19 | C19Y | tGc | tAc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.1.228 | 0.003049 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF10 | 19 | C19W | tgC | tgG | 1 | 1 | B.1.1.27 | 0.00565 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.426 | 0.035714 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.53 | 0.013699 |
ORF10 | 19 | C19X | tgC | tgA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF10 | 19 | C19Y | tGc | tAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF10 | 19 | C19V | TGC | GTG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.110 | 0.004525 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.113 | 0.015625 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.118 | 0.006711 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.124 | 0.007812 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.128 | 0.000635 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.160.11 | 0.005714 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.160.18 | 0.007299 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.167 | 0.007812 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.170 | 0.00431 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.173 | 0.026316 |
ORF10 | 19 | C19W | tgC | tgG | 1 | 1 | B.1.177 | 0.000013 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF10 | 19 | C19S | tGc | tCc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.41 | 0.0025 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF10 | 19 | C19G | TgC | GgA | 1 | 1 | B.1.177.86 | 0.000183 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.195 | 0.005025 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.195 | 0.005025 |
ORF10 | 19 | C19del1 | tGC | t-T | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 19 | C19S | tGc | tCc | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.2 | 0.000009 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.221.1 | 0.002907 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.222 | 0.001692 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.243 | 0.00007 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.258.12 | 0.007874 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.258.2 | 0.004505 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.258.5 | 0.008772 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.260 | 0.003344 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.277 | 0.02381 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.313 | 0.006579 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.320 | 0.001245 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.329 | 0.000608 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.336 | 0.002439 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.344 | 0.008197 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.350 | 0.002933 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.351 | 0.00003 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.357 | 0.009524 |
ORF10 | 19 | C19S | Tgc | Agc | 1 | 1 | B.1.36.1 | 0.00114 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.36.7 | 0.004 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.361 | 0.001289 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.362 | 0.001541 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.371 | 0.001122 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.378 | 0.006849 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.39 | 0.003906 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.390 | 0.010638 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.391 | 0.001127 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.398 | 0.002976 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.417 | 0.028571 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.423 | 0.010204 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.424 | 0.008065 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.426 | 0.001009 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.428 | 0.00102 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.429 | 0.000024 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.442 | 0.035714 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.456 | 0.003268 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.471 | 0.002732 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.478 | 0.011765 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.480 | 0.002488 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.497 | 0.000315 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.498 | 0.020408 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.521 | 0.004975 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.523 | 0.002451 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.524 | 0.001406 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.526 | 0.000024 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.527 | 0.003704 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.538 | 0.008065 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.540 | 0.009709 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.542 | 0.03125 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.560 | 0.00463 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.564 | 0.000426 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.576 | 0.000907 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.596 | 0.000087 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.596 | 0.000087 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.600 | 0.005848 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.606 | 0.006024 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.609 | 0.000479 |
ORF10 | 19 | C19X | tgC | tgA | 1 | 1 | B.1.612 | 0.002653 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.618 | 0.004032 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.625 | 0.002353 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.93 | 0.000934 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.31 | 0.003731 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.4 | 0.002208 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.46 | 0.020833 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.52 | 0.010101 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.6.1 | 0.026316 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | B.61 | 0.005747 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | C.2 | 0.016129 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | C.26 | 0.007353 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | C.32 | 0.023256 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | C.35 | 0.000774 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | C.37 | 0.000116 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | C.37 | 0.000116 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | C.37.1 | 0.002618 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | C.8 | 0.004464 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | D.2 | 0.000075 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | D.5 | 0.004975 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | L.1 | 0.001905 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | P.1 | 0.000016 |
ORF10 | 19 | C19F | tGc | tTc | 1 | 1 | P.1.14 | 0.000048 |
ORF10 | 19 | C19Y | tGc | tAc | 1 | 1 | P.1.15 | 0.000232 |
ORF10 | 19 | C19del | TGC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | P.1.2 | 0.001156 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | P.6 | 0.003145 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | P.7 | 0.004367 |
ORF10 | 19 | C19R | Tgc | Cgc | 1 | 1 | Q.1 | 0.000126 |
ORF10 | 19 | C19Y | tGc | tAc | 1 | 1 | Q.3 | 0.000145 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | Q.4 | 0.000455 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | Q.7 | 0.001111 |
ORF10 | 19 | C19C | tgC | tgT | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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