CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF10 | 10 | P10P | syn | ccG | ccA | 2723 | 2254 | 0.827763 | 29585-29587 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF10 | 10 | P10P | ccG | ccA | 2254 | 2723 | All | 0.000431 |
ORF10 | 10 | P10P | ccG | ccA | 1027 | 1115 | AY.4 | 0.001598 |
ORF10 | 10 | P10P | ccG | ccA | 231 | 303 | B.1.1.7 | 0.000207 |
ORF10 | 10 | P10P | ccG | ccA | 144 | 152 | AY.103 | 0.000894 |
ORF10 | 10 | P10P | ccG | ccA | 94 | 117 | B.1.617.2 | 0.000354 |
ORF10 | 10 | P10P | ccG | ccA | 97 | 110 | AY.25 | 0.000583 |
ORF10 | 10 | P10P | ccG | ccA | 92 | 93 | AY.9.1 | 0.007703 |
ORF10 | 10 | P10P | ccG | ccA | 72 | 82 | B.1 | 0.000659 |
ORF10 | 10 | P10P | ccG | ccA | 61 | 65 | AY.47 | 0.001897 |
ORF10 | 10 | P10P | ccG | ccA | 27 | 53 | AY.44 | 0.000164 |
ORF10 | 10 | P10P | ccG | ccA | 31 | 40 | AY.43 | 0.000137 |
ORF10 | 10 | P10P | ccG | ccA | 30 | 30 | B.1.1.354 | 0.131579 |
ORF10 | 10 | P10P | ccG | ccA | 17 | 29 | B.1.2 | 0.00015 |
ORF10 | 10 | P10P | ccG | ccA | 25 | 25 | AY.75 | 0.001401 |
ORF10 | 10 | P10P | ccG | ccA | 21 | 23 | B.1.1 | 0.000381 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 22 | B.1.243 | 0.000139 |
ORF10 | 10 | P10P | ccG | ccA | 13 | 15 | AY.120 | 0.000483 |
ORF10 | 10 | P10P | ccG | ccA | 14 | 14 | AY.9.2 | 0.000514 |
ORF10 | 10 | P10P | ccG | ccA | 12 | 13 | AY.34 | 0.001164 |
ORF10 | 10 | P10P | ccG | ccA | 12 | 12 | B.1.621 | 0.001062 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 10 | AY.3 | 0.00003 |
ORF10 | 10 | P10P | ccG | ccA | 4 | 9 | AY.118 | 0.000251 |
ORF10 | 10 | P10P | ccG | ccA | 8 | 9 | AY.23 | 0.000558 |
ORF10 | 10 | P10P | ccG | ccA | 6 | 9 | AY.26 | 0.00017 |
ORF10 | 10 | P10P | ccG | ccA | 7 | 9 | AY.39 | 0.000173 |
ORF10 | 10 | P10P | ccG | ccA | 9 | 9 | AY.98.1 | 0.000436 |
ORF10 | 10 | P10P | ccG | ccA | 7 | 8 | B.1.351 | 0.000208 |
ORF10 | 10 | P10P | ccG | ccA | 8 | 8 | B.1.36.29 | 0.004139 |
ORF10 | 10 | P10P | ccG | ccA | 8 | 8 | B.1.560 | 0.037037 |
ORF10 | 10 | P10P | ccG | ccA | 8 | 8 | B.1.619 | 0.006969 |
ORF10 | 10 | P10P | ccG | ccA | 8 | 8 | P.1.14 | 0.000382 |
ORF10 | 10 | P10P | ccG | ccA | 4 | 7 | AY.20 | 0.000155 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 7 | AY.4.2 | 0.000065 |
ORF10 | 10 | P10P | ccG | ccA | 7 | 7 | AY.99.2 | 0.000645 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 7 | P.1 | 0.000016 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 6 | AY.119 | 0.000071 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 5 | AY.110 | 0.000113 |
ORF10 | 10 | P10P | ccG | ccA | 4 | 5 | AY.29 | 0.000063 |
ORF10 | 10 | P10P | ccG | ccA | 5 | 5 | AY.3.1 | 0.000426 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 5 | AY.45 | 0.000365 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 5 | AY.46.4 | 0.000165 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 5 | AY.6 | 0.000041 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 5 | B.1.177 | 0.00004 |
ORF10 | 10 | P10P | ccG | ccA | 5 | 5 | B.1.497 | 0.001574 |
ORF10 | 10 | P10P | ccG | ccA | 5 | 5 | B.1.507 | 0.05618 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 4 | AY.102 | 0.000053 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 4 | AY.117 | 0.000254 |
ORF10 | 10 | P10P | ccG | ccA | 4 | 4 | AY.4.4 | 0.001637 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 4 | AY.42 | 0.00008 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 4 | AY.5.4 | 0.000277 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 4 | AY.61 | 0.00021 |
ORF10 | 10 | P10P | ccG | ccA | 4 | 4 | B.1.1.416 | 0.00362 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 4 | B.1.526 | 0.000071 |
ORF10 | 10 | P10P | ccG | ccA | 4 | 4 | P.2 | 0.000747 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 3 | A.1 | 0.000846 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 3 | AY.14 | 0.000264 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 3 | AY.39.1 | 0.000119 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 3 | AY.68 | 0.000821 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 3 | AY.94 | 0.001328 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 3 | B | 0.000256 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 3 | B.1.1.306 | 0.000877 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 3 | B.1.1.348 | 0.002389 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 3 | B.1.1.519 | 0.00004 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 3 | B.1.429 | 0.000024 |
ORF10 | 10 | P10P | ccG | ccA | 3 | 3 | B.1.617.1 | 0.000387 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 3 | Q.1 | 0.000126 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | AY.27 | 0.000129 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 2 | AY.33 | 0.000067 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 2 | AY.46 | 0.000104 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | AY.5 | 0.000041 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 2 | B.1.1.25 | 0.000569 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | B.1.177.57 | 0.000562 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | B.1.177.86 | 0.000367 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | B.1.258 | 0.000133 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | B.1.517 | 0.000854 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | B.1.551 | 0.002581 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | B.1.609 | 0.000959 |
ORF10 | 10 | P10P | ccG | ccA | 2 | 2 | B.1.619.1 | 0.001283 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 2 | B.1.637 | 0.000073 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | A.2.5 | 0.000499 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | A.2.5.1 | 0.004808 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.113 | 0.000142 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.114 | 0.000231 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.121 | 0.000135 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.16.1 | 0.00047 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.38 | 0.000499 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.4.5 | 0.000107 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.46.6 | 0.000072 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.58 | 0.000907 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.70 | 0.000209 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.77 | 0.001127 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.85 | 0.000427 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.86 | 0.00083 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | AY.89 | 0.004902 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.1.27 | 0.00565 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.1.277 | 0.000759 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.1.317 | 0.000412 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.1.372 | 0.000689 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.177.46 | 0.000918 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.221 | 0.000071 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.239 | 0.001221 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.36.1 | 0.00114 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.453 | 0.003236 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.540 | 0.009709 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.595 | 0.000261 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.1.627 | 0.00202 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | B.3 | 0.000831 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | C.22 | 0.071429 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | D.2 | 0.000075 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | L.3 | 0.003546 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | L.4 | 0.05 |
ORF10 | 10 | P10P | ccG | ccA | 1 | 1 | P.3 | 0.001595 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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