CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF10 : CodonNum = 10

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1010P10SnonsynCcgTcg11950119440.99949829585-29587
ORF1010P10SnonsynCcGTcA1195030.00025104629585-29587
ORF1010P10SnonsynCcGTcC1195020.00016736429585-29587
ORF1010P10SnonsynCcGTcT1195010.00008368229585-29587
ORF1010P10LnonsyncCgcTg455445440.99780429585-29587
ORF1010P10LnonsyncCGcTA455440.00087834929585-29587
ORF1010P10LnonsynCCgTTg455430.00065876229585-29587
ORF1010P10LnonsyncCGcTT455420.00043917429585-29587
ORF1010P10LnonsynCCGTTA455410.00021958729585-29587
ORF1010P10PsynccGccA272322540.82776329585-29587
ORF1010P10PsynccGccT27234620.16966629585-29587
ORF1010P10PsynccGccC272370.0025706929585-29587
ORF1010P10deldelCCG---15851585129585-29587
ORF1010P10AnonsynCcgGcg1801790.99444429585-29587
ORF1010P10AnonsynCcGGcA18010.0055555629585-29587
ORF1010P10del1delCcg-cg8888129585-29587
ORF1010P10TnonsynCcgAcg58520.89655229585-29587
ORF1010P10TnonsynCcGAcT5850.086206929585-29587
ORF1010P10TnonsynCcGAcA5810.017241429585-29587
ORF1010P10RnonsyncCgcGg38330.86842129585-29587
ORF1010P10RnonsyncCGcGC3830.078947429585-29587
ORF1010P10RnonsyncCGcGT3820.052631629585-29587
ORF1010P10QnonsyncCgcAg3131129585-29587
ORF1010P10FnonsynCCGTTC11129585-29587
ORF1010P10VnonsynCCgGTg11129585-29587
ORF1010P10HnonsyncCGcAC11129585-29587
ORF1010P10del2delCCg--g11129585-29587

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1010P10SCcgTcg1194411950All0.002284
ORF1010P10SCcGTcA311950All0.000001
ORF1010P10SCcGTcC211950All0
ORF1010P10SCcGTcT111950All0
ORF1010P10SCcgTcg65796579B.1.1.70.00589
ORF1010P10LcCgcTg45444554All0.000869
ORF1010P10LcCGcTA44554All0.000001
ORF1010P10LCCgTTg34554All0.000001
ORF1010P10LcCGcTT24554All0
ORF1010P10LCCGTTA14554All0
ORF1010P10PccGccA22542723All0.000431
ORF1010P10PccGccT4622723All0.000088
ORF1010P10PccGccC72723All0.000001
ORF1010P10LcCgcTg27122713B.1.5260.063744
ORF1010P10LCCgTTg12713B.1.5260.000024
ORF1010P10delCCG---15851585All0.000303
ORF1010P10delCCG---12591259B.1.1280.799873
ORF1010P10PccGccA10271115AY.40.001598
ORF1010P10PccGccT881115AY.40.000137
ORF1010P10SCcgTcg784784AU.10.992405
ORF1010P10SCcgTcg317319B.1.617.20.001194
ORF1010P10SCcGTcC2319B.1.617.20.000008
ORF1010P10SCcgTcg308308B.1.20.002712
ORF1010P10PccGccA231303B.1.1.70.000207
ORF1010P10PccGccT72303B.1.1.70.000064
ORF1010P10SCcgTcg302302AY.540.028795
ORF1010P10SCcgTcg264264AY.40.000411
ORF1010P10SCcgTcg244245AY.430.001081
ORF1010P10SCcGTcA1245AY.430.000004
ORF1010P10LcCgcTg215216AY.250.001293
ORF1010P10LCCgTTg1216AY.250.000006
ORF1010P10SCcgTcg213213B.1.177.860.039075
ORF1010P10SCcgTcg195195B.1.10.003537
ORF1010P10LcCgcTg191191AY.40.000297
ORF1010P10ACcgGcg179180All0.000034
ORF1010P10ACcGGcA1180All0
ORF1010P10LcCgcTg169170B.1.1.70.000151
ORF1010P10LCCgTTg1170B.1.1.70.000001
ORF1010P10PccGccA144152AY.1030.000894
ORF1010P10PccGccT8152AY.1030.00005
ORF1010P10LcCgcTg147147B.1.617.20.000554
ORF1010P10SCcgTcg137137N.50.242049
ORF1010P10SCcgTcg135135AY.1030.000838
ORF1010P10SCcgTcg130130B.1.1.630.050154
ORF1010P10SCcgTcg128128AY.30.001273
ORF1010P10SCcgTcg125125B.1.4290.002941
ORF1010P10LcCgcTg117117AY.430.000518
ORF1010P10PccGccA94117B.1.617.20.000354
ORF1010P10PccGccT23117B.1.617.20.000087
ORF1010P10LcCgcTg114115AY.440.000694
ORF1010P10LcCGcTT1115AY.440.000006
ORF1010P10PccGccA97110AY.250.000583
ORF1010P10PccGccT13110AY.250.000078
ORF1010P10ACcgGcg109109B.1.1.70.000098
ORF1010P10SCcgTcg109109B.1.1770.001435
ORF1010P10PccGccA9293AY.9.10.007703
ORF1010P10PccGccT193AY.9.10.000084
ORF1010P10SCcgTcg9191B.1.36.360.054786
ORF1010P10SCcgTcg8989B.10.000815
ORF1010P10del1Ccg-cg8888All0.000017
ORF1010P10SCcgTcg8787AY.260.002463
ORF1010P10SCcgTcg8686B.1.3240.138042
ORF1010P10PccGccA7282B.10.000659
ORF1010P10PccGccT1082B.10.000092
ORF1010P10LcCgcTg8080B.1.1.5190.003177
ORF1010P10SCcgTcg7070AY.250.000421
ORF1010P10SCcgTcg6666AY.4.20.001431
ORF1010P10PccGccA6165AY.470.001897
ORF1010P10PccGccT465AY.470.000124
ORF1010P10LcCgcTg6363B.10.000577
ORF1010P10SCcgTcg6363B.1.1.4320.079747
ORF1010P10LcCgcTg6363B.1.20.000555
ORF1010P10SCcgTcg6161AY.440.000371
ORF1010P10TCcgAcg5258All0.00001
ORF1010P10TCcGAcT558All0.000001
ORF1010P10TCcGAcA158All0
ORF1010P10LcCgcTg5858AY.1110.010623
ORF1010P10SCcgTcg5757B.1.1.2740.287879
ORF1010P10SCcgTcg5656AY.50.001156
ORF1010P10LcCgcTg5255AY.1030.000323
ORF1010P10LcCGcTA355AY.1030.000019
ORF1010P10SCcgTcg5454P.10.000851
ORF1010P10PccGccA2753AY.440.000164
ORF1010P10PccGccT2653AY.440.000158
ORF1010P10SCcgTcg4848AY.39.10.001901
ORF1010P10SCcgTcg4545AY.1020.001193
ORF1010P10SCcgTcg4142AY.200.001593
ORF1010P10SCcGTcA142AY.200.000039
ORF1010P10SCcgTcg4141A.10.011556
ORF1010P10LcCgcTg4141AY.290.000647
ORF1010P10PccGccA3140AY.430.000137
ORF1010P10PccGccT940AY.430.00004
ORF1010P10RcCgcGg3338All0.000006
ORF1010P10RcCGcGC338All0.000001
ORF1010P10RcCGcGT238All0
ORF1010P10SCcgTcg3838AY.1200.001413
ORF1010P10SCcgTcg3737B.1.4270.001868
ORF1010P10LcCgcTg3636B.1.4270.001818
ORF1010P10SCcgTcg3434AY.980.002686
ORF1010P10del1Ccg-cg3333B.1.1.70.00003
ORF1010P10delCCG---3232B.1.1.410.202532
ORF1010P10QcCgcAg3131All0.000006
ORF1010P10delCCG---3131AY.40.000048
ORF1010P10PccGccA3030B.1.1.3540.131579
ORF1010P10PccGccA1729B.1.20.00015
ORF1010P10PccGccT1229B.1.20.000106
ORF1010P10SCcgTcg2929B.340.39726
ORF1010P10SCcgTcg2828AY.390.000692
ORF1010P10ACcgGcg2727AY.1200.001004
ORF1010P10SCcgTcg2727AY.60.00111
ORF1010P10delCCG---2626AY.470.000809
ORF1010P10SCcgTcg2626D.20.001951
ORF1010P10PccGccA2525AY.750.001401
ORF1010P10delCCG---2525B.1.1.70.000022
ORF1010P10SCcgTcg2424B.1.2650.030496
ORF1010P10PccGccT2424B.1.6230.012876
ORF1010P10SCcgTcg2323AY.500.018385
ORF1010P10SCcgTcg2323AY.920.006607
ORF1010P10PccGccA2123B.1.10.000381
ORF1010P10PccGccT223B.1.10.000036
ORF1010P10PccGccT2022B.1.2430.001392
ORF1010P10PccGccA222B.1.2430.000139
ORF1010P10SCcgTcg2121B.1.1.5190.000834
ORF1010P10SCcgTcg2121B.1.2210.001492
ORF1010P10SCcgTcg2121B.1.36.290.010864
ORF1010P10del1Ccg-cg2121B.1.5260.000494
ORF1010P10del1Ccg-cg2020AY.250.00012
ORF1010P10LcCgcTg2020AY.30.000199
ORF1010P10delCCG---2020B.1.160.140.042373
ORF1010P10RcCgcGg1919AY.9.20.000698
ORF1010P10SCcgTcg1919B.1.1.1330.161017
ORF1010P10delCCG---1919B.1.1.5190.000755
ORF1010P10LcCgcTg1818B.1.2320.009672
ORF1010P10SCcgTcg1818B.1.5960.001568
ORF1010P10TCcgAcg1717AY.40.000026
ORF1010P10SCcgTcg1717AY.420.000684
ORF1010P10LcCgcTg1616AY.390.000395
ORF1010P10SCcgTcg1515A.2.50.007485
ORF1010P10PccGccA1315AY.1200.000483
ORF1010P10PccGccT215AY.1200.000074
ORF1010P10delCCG---1515AY.390.000371
ORF1010P10SCcgTcg1515AY.98.10.000726
ORF1010P10ACcgGcg1515AZ.20.012315
ORF1010P10SCcgTcg1515B.1.3510.000446
ORF1010P10LcCgcTg1414AY.1020.000371
ORF1010P10LcCgcTg1414AY.470.000435
ORF1010P10PccGccA1414AY.9.20.000514
ORF1010P10SCcgTcg1414AY.9.20.000514
ORF1010P10QcCgcAg1414B.1.1.70.000013
ORF1010P10SCcgTcg1313AY.1190.000459
ORF1010P10PccGccA1213AY.340.001164
ORF1010P10PccGccT113AY.340.000097
ORF1010P10LcCgcTg1313AY.540.00124
ORF1010P10LcCgcTg1313AY.9.20.000477
ORF1010P10delCCG---1313B.1.617.20.000049
ORF1010P10PccGccT1212AY.360.001779
ORF1010P10LcCgcTg1212B.1.3510.000357
ORF1010P10PccGccA1212B.1.6210.001062
ORF1010P10SCcgTcg1212B.1.6210.001062
ORF1010P10SCcgTcg1111B.1.1.4200.011066
ORF1010P10TCcgAcg1111B.1.1.70.00001
ORF1010P10SCcgTcg1111B.1.5260.000259
ORF1010P10SCcgTcg1010AY.230.000697
ORF1010P10PccGccT410AY.30.00004
ORF1010P10PccGccA310AY.30.00003
ORF1010P10PccGccC310AY.30.00003
ORF1010P10LcCgcTg1010AY.330.000668
ORF1010P10LcCgcTg1010AY.610.001048
ORF1010P10SCcgTcg1010AY.750.00056
ORF1010P10LcCgcTg1010B.1.10.000181
ORF1010P10TCcgAcg510B.1.1280.003177
ORF1010P10TCcGAcT510B.1.1280.003177
ORF1010P10SCcgTcg1010B.1.1600.000312
ORF1010P10PccGccT1010B.1.1600.000312
ORF1010P10SCcgTcg1010B.1.177.160.006645
ORF1010P10SCcgTcg1010B.1.2580.000665
ORF1010P10LcCgcTg1010B.1.5960.000871
ORF1010P10delCCG---99AD.20.001971
ORF1010P10SCcgTcg99AY.1000.000414
ORF1010P10SCcgTcg99AY.1180.000564
ORF1010P10PccGccT59AY.1180.000313
ORF1010P10PccGccA49AY.1180.000251
ORF1010P10SCcgTcg99AY.140.000792
ORF1010P10PccGccA89AY.230.000558
ORF1010P10PccGccT19AY.230.00007
ORF1010P10PccGccA69AY.260.00017
ORF1010P10PccGccT39AY.260.000085
ORF1010P10PccGccA79AY.390.000173
ORF1010P10PccGccT29AY.390.000049
ORF1010P10delCCG---99AY.440.000055
ORF1010P10PccGccA99AY.98.10.000436
ORF1010P10LcCgcTg99B.1.1.1890.013616
ORF1010P10SCcgTcg99B.1.1.2140.000499
ORF1010P10LcCgcTg99B.1.1.2220.001836
ORF1010P10SCcgTcg99B.1.1.2220.001836
ORF1010P10LcCgcTg99B.1.1770.000119
ORF1010P10SCcgTcg99B.1.5090.007792
ORF1010P10SCcgTcg99B.1.6370.000658
ORF1010P10LcCgcTg88AY.1200.000297
ORF1010P10delCCG---88AY.250.000048
ORF1010P10LcCgcTg88AY.420.000322
ORF1010P10SCcgTcg78AY.450.000852
ORF1010P10SCcGTcT18AY.450.000122
ORF1010P10LcCgcTg88AY.60.000329
ORF1010P10delCCG---88B.1.1.2410.016563
ORF1010P10SCcgTcg88B.1.177.240.010363
ORF1010P10PccGccA78B.1.3510.000208
ORF1010P10PccGccT18B.1.3510.00003
ORF1010P10PccGccA88B.1.36.290.004139
ORF1010P10SCcgTcg88B.1.466.20.00313
ORF1010P10PccGccA88B.1.5600.037037
ORF1010P10PccGccA88B.1.6190.006969
ORF1010P10LcCgcTg88P.10.000126
ORF1010P10PccGccA88P.1.140.000382
ORF1010P10SCcgTcg88Q.10.001011
ORF1010P10PccGccT77AY.1000.000322
ORF1010P10LcCgcTg77AY.120.002212
ORF1010P10PccGccA47AY.200.000155
ORF1010P10PccGccT37AY.200.000117
ORF1010P10SCcgTcg77AY.290.00011
ORF1010P10PccGccT47AY.4.20.000087
ORF1010P10PccGccA37AY.4.20.000065
ORF1010P10LcCgcTg77AY.4.2.10.001043
ORF1010P10SCcgTcg77AY.460.000729
ORF1010P10LcCgcTg77AY.50.000145
ORF1010P10LcCgcTg77AY.90.000473
ORF1010P10LcCgcTg77AY.9.10.000586
ORF1010P10LcCgcTg77AY.980.000553
ORF1010P10PccGccA77AY.99.20.000645
ORF1010P10LcCgcTg77AY.99.20.000645
ORF1010P10SCcgTcg77B.1.1.3050.027027
ORF1010P10SCcgTcg77B.1.1.3060.003069
ORF1010P10delCCG---77B.1.4020.068627
ORF1010P10PccGccT67P.10.000095
ORF1010P10PccGccA17P.10.000016
ORF1010P10LcCgcTg66AY.1000.000276
ORF1010P10SCcgTcg66AY.1170.000507
ORF1010P10PccGccT46AY.1190.000141
ORF1010P10PccGccA26AY.1190.000071
ORF1010P10LcCgcTg66AY.230.000418
ORF1010P10LcCgcTg66AY.39.10.000238
ORF1010P10SCcgTcg66AY.590.003178
ORF1010P10LcCgcTg66AY.620.002614
ORF1010P10delCCG---66B.10.000055
ORF1010P10delCCG---66B.1.1770.000079
ORF1010P10SCcgTcg66B.1.177.70.000989
ORF1010P10delCCG---66B.1.20.000053
ORF1010P10SCcgTcg66B.1.2430.000418
ORF1010P10ACcgGcg66B.1.617.20.000023
ORF1010P10SCcgTcg66P.20.00112
ORF1010P10SCcgTcg66Q.40.002729
ORF1010P10delCCG---55AY.1030.000031
ORF1010P10PccGccT45AY.1100.000451
ORF1010P10PccGccA15AY.1100.000113
ORF1010P10LcCgcTg55AY.260.000142
ORF1010P10PccGccA45AY.290.000063
ORF1010P10PccGccT15AY.290.000016
ORF1010P10delCCG---55AY.30.00005
ORF1010P10PccGccA55AY.3.10.000426
ORF1010P10SCcgTcg55AY.4.2.10.000745
ORF1010P10PccGccA35AY.450.000365
ORF1010P10PccGccT25AY.450.000243
ORF1010P10PccGccT45AY.46.40.000658
ORF1010P10PccGccA15AY.46.40.000165
ORF1010P10SCcgTcg55AY.470.000156
ORF1010P10PccGccT45AY.60.000165
ORF1010P10PccGccA15AY.60.000041
ORF1010P10LcCgcTg55B.1.1.1740.016892
ORF1010P10SCcgTcg55B.1.1.2200.009294
ORF1010P10SCcgTcg55B.1.1.330.002104
ORF1010P10LcCgcTg55B.1.1.3680.015432
ORF1010P10SCcgTcg55B.1.110.30.003592
ORF1010P10PccGccA35B.1.1770.00004
ORF1010P10PccGccT25B.1.1770.000026
ORF1010P10LcCgcTg55B.1.214.20.002998
ORF1010P10SCcgTcg55B.1.258.170.00052
ORF1010P10LcCgcTg55B.1.360.00073
ORF1010P10LcCgcTg55B.1.4290.000118
ORF1010P10PccGccA55B.1.4970.001574
ORF1010P10PccGccA55B.1.5070.05618
ORF1010P10LcCgcTg55B.1.6370.000365
ORF1010P10SCcgTcg55C.370.00058
ORF1010P10delCCG---55P.10.000079
ORF1010P10SCcgTcg55Q.80.000825
ORF1010P10LcCgcTg44A0.001548
ORF1010P10PccGccA24AY.1020.000053
ORF1010P10PccGccT24AY.1020.000053
ORF1010P10TCcgAcg44AY.1030.000025
ORF1010P10LcCgcTg44AY.1130.00057
ORF1010P10PccGccA34AY.1170.000254
ORF1010P10PccGccT14AY.1170.000085
ORF1010P10SCcgTcg44AY.190.004561
ORF1010P10SCcgTcg44AY.270.000259
ORF1010P10SCcgTcg44AY.370.001264
ORF1010P10QcCgcAg44AY.40.000006
ORF1010P10PccGccA44AY.4.40.001637
ORF1010P10PccGccT24AY.420.00008
ORF1010P10PccGccA24AY.420.00008
ORF1010P10LcCgcTg44AY.450.000487
ORF1010P10PccGccT34AY.5.40.00083
ORF1010P10PccGccA14AY.5.40.000277
ORF1010P10delCCG---44AY.60.000165
ORF1010P10SCcgTcg44AY.610.000419
ORF1010P10PccGccA24AY.610.00021
ORF1010P10PccGccT24AY.610.00021
ORF1010P10LcCgcTg44AY.7.10.000451
ORF1010P10SCcgTcg44AY.730.002661
ORF1010P10SCcgTcg44AY.850.001709
ORF1010P10SCcgTcg44B0.000511
ORF1010P10delCCG---44B.1.10.000073
ORF1010P10SCcgTcg44B.1.1.2840.00043
ORF1010P10SCcgTcg44B.1.1.3040.011236
ORF1010P10SCcgTcg44B.1.1.3170.001647
ORF1010P10SCcgTcg44B.1.1.3510.011173
ORF1010P10PccGccA44B.1.1.4160.00362
ORF1010P10SCcgTcg44B.1.1.4480.00813
ORF1010P10LcCgcTg44B.1.1650.047619
ORF1010P10SCcgTcg44B.1.177.440.002076
ORF1010P10SCcgTcg44B.1.2340.000528
ORF1010P10LcCgcTg44B.1.258.30.0067
ORF1010P10SCcgTcg44B.1.3460.005242
ORF1010P10PccGccT44B.1.3460.005242
ORF1010P10PccGccT44B.1.360.000584
ORF1010P10LcCgcTg44B.1.438.10.000429
ORF1010P10SCcgTcg44B.1.4970.001259
ORF1010P10delCCG---44B.1.5260.000094
ORF1010P10PccGccA34B.1.5260.000071
ORF1010P10PccGccT14B.1.5260.000024
ORF1010P10LcCgcTg44B.1.5270.014815
ORF1010P10ACcgGcg44P.10.000063
ORF1010P10PccGccA44P.20.000747
ORF1010P10LcCgcTg44Q.80.00066
ORF1010P10PccGccA33A.10.000846
ORF1010P10SCcgTcg33AY.1010.001471
ORF1010P10LcCgcTg33AY.1070.001398
ORF1010P10PccGccA33AY.140.000264
ORF1010P10PccGccT33AY.20.001068
ORF1010P10RcCgcGg33AY.30.00003
ORF1010P10LcCgcTg33AY.3.10.000256
ORF1010P10PccGccA33AY.39.10.000119
ORF1010P10LcCgcTg33AY.4.50.000322
ORF1010P10delCCG---33AY.430.000013
ORF1010P10RcCgcGg23AY.440.000012
ORF1010P10RcCGcGT13AY.440.000006
ORF1010P10SCcgTcg33AY.46.60.000217
ORF1010P10delCCG---33AY.50.000062
ORF1010P10delCCG---33AY.540.000286
ORF1010P10PccGccA33AY.680.000821
ORF1010P10SCcgTcg33AY.7.10.000338
ORF1010P10del1Ccg-cg33AY.90.000203
ORF1010P10SCcgTcg33AY.9.10.000251
ORF1010P10PccGccA33AY.940.001328
ORF1010P10SCcgTcg33AY.99.20.000276
ORF1010P10PccGccA23B0.000256
ORF1010P10PccGccC13B0.000128
ORF1010P10QcCgcAg33B.10.000027
ORF1010P10PccGccT33B.1.1.1890.004539
ORF1010P10delCCG---33B.1.1.2220.000612
ORF1010P10PccGccA23B.1.1.3060.000877
ORF1010P10PccGccT13B.1.1.3060.000438
ORF1010P10LcCgcTg33B.1.1.3260.005282
ORF1010P10PccGccA33B.1.1.3480.002389
ORF1010P10PccGccT23B.1.1.5190.000079
ORF1010P10PccGccA13B.1.1.5190.00004
ORF1010P10LcCgcTg33B.1.1600.000094
ORF1010P10SCcgTcg33B.1.177.540.001819
ORF1010P10SCcgTcg33B.1.177.810.000568
ORF1010P10SCcgTcg33B.1.2600.010033
ORF1010P10PccGccT23B.1.4290.000047
ORF1010P10PccGccA13B.1.4290.000024
ORF1010P10SCcgTcg33B.1.438.10.000322
ORF1010P10SCcgTcg33B.1.4590.012245
ORF1010P10PccGccA33B.1.617.10.000387
ORF1010P10SCcgTcg23B.1.617.10.000258
ORF1010P10SCcGTcA13B.1.617.10.000129
ORF1010P10SCcgTcg33B.1.6190.002613
ORF1010P10SCcgTcg33C.1.20.012766
ORF1010P10RcCgcGg33C.370.000348
ORF1010P10LcCgcTg33D.50.014925
ORF1010P10SCcgTcg33P.1.140.000143
ORF1010P10PccGccT23Q.10.000253
ORF1010P10PccGccA13Q.10.000126
ORF1010P10ACcgGcg33Q.40.001364
ORF1010P10LcCgcTg33Q.70.003333
ORF1010P10LcCgcTg33R.10.00027
ORF1010P10PccGccT22A.270.003311
ORF1010P10SCcgTcg22AE.80.000978
ORF1010P10RcCGcGC22AY.1030.000012
ORF1010P10SCcgTcg22AY.1050.001286
ORF1010P10SCcgTcg22AY.1070.000932
ORF1010P10SCcgTcg22AY.1100.000225
ORF1010P10SCcgTcg22AY.1130.000285
ORF1010P10LcCgcTg22AY.1170.000169
ORF1010P10SCcgTcg22AY.130.000322
ORF1010P10SCcgTcg22AY.160.000759
ORF1010P10PccGccA22AY.270.000129
ORF1010P10LcCgcTg22AY.270.000129
ORF1010P10TCcgAcg22AY.30.00002
ORF1010P10LcCgcTg22AY.300.000791
ORF1010P10PccGccA12AY.330.000067
ORF1010P10PccGccT12AY.330.000067
ORF1010P10SCcgTcg22AY.340.000194
ORF1010P10SCcgTcg22AY.360.000296
ORF1010P10ACcgGcg22AY.40.000003
ORF1010P10delCCG---22AY.4.50.000215
ORF1010P10QcCgcAg22AY.440.000012
ORF1010P10PccGccC12AY.460.000104
ORF1010P10PccGccA12AY.460.000104
ORF1010P10LcCgcTg22AY.46.60.000144
ORF1010P10PccGccA22AY.50.000041
ORF1010P10LcCgcTg22AY.510.001818
ORF1010P10SCcgTcg22AY.550.001835
ORF1010P10PccGccT22AY.710.00095
ORF1010P10SCcgTcg22AY.710.00095
ORF1010P10SCcgTcg22AY.780.003082
ORF1010P10PccGccT22AY.90.000135
ORF1010P10SCcgTcg22AY.90.000135
ORF1010P10TCcgAcg22B.10.000018
ORF1010P10SCcgTcg22B.1.1.1530.002191
ORF1010P10delCCG---22B.1.1.2140.000111
ORF1010P10LcCgcTg22B.1.1.2140.000111
ORF1010P10PccGccT12B.1.1.250.000569
ORF1010P10PccGccA12B.1.1.250.000569
ORF1010P10SCcgTcg22B.1.1.280.000622
ORF1010P10LcCgcTg22B.1.1.2910.001485
ORF1010P10LcCgcTg22B.1.1.3060.000877
ORF1010P10LcCgcTg22B.1.1.330.000842
ORF1010P10delCCG---22B.1.1.3680.006173
ORF1010P10LcCgcTg22B.1.1.3740.004751
ORF1010P10SCcgTcg22B.1.160.70.004158
ORF1010P10SCcgTcg22B.1.177.210.000153
ORF1010P10ACcgGcg22B.1.177.40.000422
ORF1010P10LcCgcTg22B.1.177.440.001038
ORF1010P10PccGccA22B.1.177.570.000562
ORF1010P10PccGccA22B.1.177.860.000367
ORF1010P10LcCgcTg22B.1.2430.000139
ORF1010P10LcCgcTg22B.1.2580.000133
ORF1010P10PccGccA22B.1.2580.000133
ORF1010P10SCcgTcg22B.1.258.220.005333
ORF1010P10PccGccT22B.1.3490.00143
ORF1010P10SCcgTcg22B.1.351.20.000605
ORF1010P10PccGccT22B.1.36.80.002
ORF1010P10SCcgTcg22B.1.3690.00057
ORF1010P10delCCG---22B.1.3750.001639
ORF1010P10PccGccT22B.1.4160.002538
ORF1010P10LcCgcTg22B.1.4220.001625
ORF1010P10TCcgAcg22B.1.4270.000101
ORF1010P10SCcgTcg22B.1.4530.006472
ORF1010P10PccGccA22B.1.5170.000854
ORF1010P10SCcgTcg22B.1.5270.007407
ORF1010P10PccGccA22B.1.5510.002581
ORF1010P10SCcgTcg22B.1.564.10.003155
ORF1010P10LcCgcTg22B.1.5750.000607
ORF1010P10SCcgTcg22B.1.5750.000607
ORF1010P10SCcgTcg22B.1.5820.000981
ORF1010P10RcCgcGg12B.1.5960.000087
ORF1010P10RcCGcGC12B.1.5960.000087
ORF1010P10PccGccA22B.1.6090.000959
ORF1010P10del1Ccg-cg22B.1.617.20.000008
ORF1010P10SCcgTcg22B.1.619.10.001283
ORF1010P10PccGccA22B.1.619.10.001283
ORF1010P10LcCgcTg22B.1.6210.000177
ORF1010P10delCCG---22B.1.6210.000177
ORF1010P10LcCgcTg22B.1.6230.001073
ORF1010P10SCcgTcg22B.1.6280.000705
ORF1010P10PccGccT12B.1.6370.000073
ORF1010P10PccGccA12B.1.6370.000073
ORF1010P10SCcgTcg22B.400.000729
ORF1010P10delCCG---22D.20.00015
ORF1010P10ACcgGcg22P.1.140.000096
ORF1010P10TCcgAcg22P.1.150.000465
ORF1010P10LcCgcTg22P.1.70.000639
ORF1010P10SCcgTcg22P.30.00319
ORF1010P10LcCgcTg22Q.40.00091
ORF1010P10LcCgcTg22V.20.064516
ORF1010P10PccGccC110.055556
ORF1010P10SCcgTcg11A0.000387
ORF1010P10QcCgcAg11A0.000387
ORF1010P10delCCG---11A.10.000282
ORF1010P10SCcgTcg11A.110.058824
ORF1010P10LcCgcTg11A.2.50.000499
ORF1010P10PccGccA11A.2.50.000499
ORF1010P10PccGccA11A.2.5.10.004808
ORF1010P10SCcgTcg11A.280.002646
ORF1010P10SCcgTcg11AD.20.000219
ORF1010P10FCCGTTC11All0
ORF1010P10del2CCg--g11All0
ORF1010P10VCCgGTg11All0
ORF1010P10HcCGcAC11All0
ORF1010P10LcCgcTg11AT.10.005128
ORF1010P10SCcgTcg11AY.10.000396
ORF1010P10del1Ccg-cg11AY.1000.000046
ORF1010P10delCCG---11AY.1010.00049
ORF1010P10RcCgcGg11AY.1020.000027
ORF1010P10delCCG---11AY.1020.000027
ORF1010P10ACcgGcg11AY.1030.000006
ORF1010P10PccGccT11AY.1050.000643
ORF1010P10SCcgTcg11AY.1060.000335
ORF1010P10ACcgGcg11AY.1100.000113
ORF1010P10delCCG---11AY.1100.000113
ORF1010P10delCCG---11AY.1110.000183
ORF1010P10PccGccA11AY.1130.000142
ORF1010P10PccGccA11AY.1140.000231
ORF1010P10SCcgTcg11AY.1140.000231
ORF1010P10SCcgTcg11AY.116.10.000311
ORF1010P10LcCgcTg11AY.1180.000063
ORF1010P10PccGccT11AY.120.10.000321
ORF1010P10SCcgTcg11AY.1210.000135
ORF1010P10PccGccA11AY.1210.000135
ORF1010P10LcCgcTg11AY.1210.000135
ORF1010P10LcCgcTg11AY.140.000088
ORF1010P10PccGccA11AY.16.10.00047
ORF1010P10SCcgTcg11AY.16.10.00047
ORF1010P10LcCgcTg11AY.200.000039
ORF1010P10delCCG---11AY.200.000039
ORF1010P10QcCgcAg11AY.200.000039
ORF1010P10SCcgTcg11AY.220.002092
ORF1010P10LcCgcTg11AY.240.000431
ORF1010P10RcCgcGg11AY.250.000006
ORF1010P10QcCgcAg11AY.250.000006
ORF1010P10delCCG---11AY.260.000028
ORF1010P10delCCG---11AY.270.000065
ORF1010P10del1Ccg-cg11AY.290.000016
ORF1010P10SCcgTcg11AY.29.10.000221
ORF1010P10ACcgGcg11AY.30.00001
ORF1010P10delCCG---11AY.3.10.000085
ORF1010P10SCcgTcg11AY.300.000396
ORF1010P10QcCgcAg11AY.300.000396
ORF1010P10SCcgTcg11AY.320.000532
ORF1010P10LcCgcTg11AY.340.000097
ORF1010P10LcCgcTg11AY.34.10.00051
ORF1010P10SCcgTcg11AY.34.10.00051
ORF1010P10SCcgTcg11AY.350.000233
ORF1010P10LcCGcTT11AY.360.000148
ORF1010P10PccGccT11AY.370.000316
ORF1010P10PccGccA11AY.380.000499
ORF1010P10delCCG---11AY.39.10.00004
ORF1010P10SCcgTcg11AY.39.20.001541
ORF1010P10LcCgcTg11AY.4.30.000842
ORF1010P10PccGccA11AY.4.50.000107
ORF1010P10PccGccT11AY.410.000294
ORF1010P10ACcgGcg11AY.430.000004
ORF1010P10SCcgTcg11AY.46.40.000165
ORF1010P10LcCgcTg11AY.46.40.000165
ORF1010P10SCcgTcg11AY.46.50.000198
ORF1010P10PccGccA11AY.46.60.000072
ORF1010P10ACcGGcA11AY.530.000288
ORF1010P10SCcgTcg11AY.530.000288
ORF1010P10SCcgTcg11AY.570.000656
ORF1010P10LcCgcTg11AY.570.000656
ORF1010P10SCcgTcg11AY.580.000907
ORF1010P10PccGccA11AY.580.000907
ORF1010P10LcCGcTA11AY.590.00053
ORF1010P10delCCG---11AY.590.00053
ORF1010P10delCCG---11AY.610.000105
ORF1010P10delCCG---11AY.620.000436
ORF1010P10SCcgTcg11AY.620.000436
ORF1010P10delCCG---11AY.650.000533
ORF1010P10LcCgcTg11AY.680.000274
ORF1010P10SCcgTcg11AY.690.000187
ORF1010P10TCcgAcg11AY.70.000196
ORF1010P10delCCG---11AY.7.10.000113
ORF1010P10LcCgcTg11AY.7.20.000559
ORF1010P10SCcgTcg11AY.700.000209
ORF1010P10delCCG---11AY.700.000209
ORF1010P10PccGccA11AY.700.000209
ORF1010P10LcCgcTg11AY.750.000056
ORF1010P10ACcgGcg11AY.75.10.00018
ORF1010P10SCcgTcg11AY.75.10.00018
ORF1010P10SCcgTcg11AY.760.004831
ORF1010P10LcCgcTg11AY.770.001127
ORF1010P10PccGccA11AY.770.001127
ORF1010P10LcCgcTg11AY.780.001541
ORF1010P10SCcgTcg11AY.840.000437
ORF1010P10PccGccA11AY.850.000427
ORF1010P10PccGccA11AY.860.00083
ORF1010P10PccGccA11AY.890.004902
ORF1010P10delCCG---11AY.90.000068
ORF1010P10TCcgAcg11AY.9.20.000037
ORF1010P10delCCG---11AY.9.20.000037
ORF1010P10SCcgTcg11AY.910.00073
ORF1010P10SCcgTcg11AY.930.000273
ORF1010P10SCcgTcg11AY.950.000761
ORF1010P10SCcgTcg11AY.960.002075
ORF1010P10PccGccT11AY.980.000079
ORF1010P10SCcgTcg11AY.990.001049
ORF1010P10VCCgGTg11AZ.20.000821
ORF1010P10del1Ccg-cg11AZ.30.00152
ORF1010P10RcCgcGg11B.10.000009
ORF1010P10del1Ccg-cg11B.10.000009
ORF1010P10ACcgGcg11B.1.10.000018
ORF1010P10TCcgAcg11B.1.10.000018
ORF1010P10SCcgTcg11B.1.1.10.000327
ORF1010P10SCcgTcg11B.1.1.1170.009709
ORF1010P10SCcgTcg11B.1.1.1280.007092
ORF1010P10SCcgTcg11B.1.1.1410.002012
ORF1010P10PccGccT11B.1.1.1410.002012
ORF1010P10LcCgcTg11B.1.1.1410.002012
ORF1010P10SCcgTcg11B.1.1.1590.004673
ORF1010P10LcCgcTg11B.1.1.1760.000439
ORF1010P10SCcgTcg11B.1.1.1890.001513
ORF1010P10LcCgcTg11B.1.1.1960.005714
ORF1010P10SCcgTcg11B.1.1.1980.001468
ORF1010P10LcCgcTg11B.1.1.2070.001182
ORF1010P10PccGccA11B.1.1.2160.00089
ORF1010P10SCcgTcg11B.1.1.2160.00089
ORF1010P10LcCgcTg11B.1.1.2160.00089
ORF1010P10SCcgTcg11B.1.1.2250.007194
ORF1010P10SCcgTcg11B.1.1.2280.003049
ORF1010P10SCcgTcg11B.1.1.2430.004082
ORF1010P10SCcgTcg11B.1.1.250.000569
ORF1010P10LcCgcTg11B.1.1.250.000569
ORF1010P10PccGccA11B.1.1.270.00565
ORF1010P10PccGccA11B.1.1.2770.000759
ORF1010P10PccGccT11B.1.1.2840.000107
ORF1010P10PccGccA11B.1.1.3170.000412
ORF1010P10SCcgTcg11B.1.1.3180.000302
ORF1010P10PccGccA11B.1.1.3180.000302
ORF1010P10PccGccA11B.1.1.3260.001761
ORF1010P10SCcgTcg11B.1.1.3480.000796
ORF1010P10LcCgcTg11B.1.1.3510.002793
ORF1010P10SCcgTcg11B.1.1.3540.004386
ORF1010P10delCCG---11B.1.1.3560.008547
ORF1010P10LcCgcTg11B.1.1.3690.000446
ORF1010P10LcCgcTg11B.1.1.370.000193
ORF1010P10PccGccT11B.1.1.370.000193
ORF1010P10PccGccA11B.1.1.3720.000689
ORF1010P10SCcgTcg11B.1.1.3770.001381
ORF1010P10LcCgcTg11B.1.1.390.00051
ORF1010P10LcCgcTg11B.1.1.3970.002252
ORF1010P10SCcgTcg11B.1.1.3970.002252
ORF1010P10PccGccT11B.1.1.4060.006494
ORF1010P10SCcgTcg11B.1.1.4090.002833
ORF1010P10delCCG---11B.1.1.4200.001006
ORF1010P10SCcgTcg11B.1.1.4310.016129
ORF1010P10PccGccT11B.1.1.4320.001266
ORF1010P10LcCgcTg11B.1.1.4480.002033
ORF1010P10SCcgTcg11B.1.1.460.004367
ORF1010P10PccGccT11B.1.1.500.000679
ORF1010P10LcCgcTg11B.1.1.500.000679
ORF1010P10LcCgcTg11B.1.1.5180.006329
ORF1010P10QcCgcAg11B.1.1.5190.00004
ORF1010P10ACcgGcg11B.1.1.5230.001563
ORF1010P10RcCgcGg11B.1.1.70.000001
ORF1010P10HcCGcAC11B.1.1.70.000001
ORF1010P10SCcgTcg11B.1.1.700.000341
ORF1010P10SCcgTcg11B.1.1040.00369
ORF1010P10SCcgTcg11B.1.1270.002198
ORF1010P10SCcgTcg11B.1.1280.000635
ORF1010P10SCcgTcg11B.1.1390.000733
ORF1010P10delCCG---11B.1.1490.003425
ORF1010P10delCCG---11B.1.1600.000031
ORF1010P10del1Ccg-cg11B.1.1600.000031
ORF1010P10LcCgcTg11B.1.160.120.00641
ORF1010P10SCcgTcg11B.1.160.260.002421
ORF1010P10LcCgcTg11B.1.177.120.000152
ORF1010P10SCcgTcg11B.1.177.150.000631
ORF1010P10LcCgcTg11B.1.177.150.000631
ORF1010P10SCcgTcg11B.1.177.330.001645
ORF1010P10SCcgTcg11B.1.177.40.000211
ORF1010P10PccGccA11B.1.177.460.000918
ORF1010P10SCcgTcg11B.1.177.520.001757
ORF1010P10SCcgTcg11B.1.177.570.000281
ORF1010P10LcCgcTg11B.1.177.600.000218
ORF1010P10TCcGAcA11B.1.177.630.002703
ORF1010P10SCcgTcg11B.1.177.770.000726
ORF1010P10PccGccT11B.1.177.820.000477
ORF1010P10SCcgTcg11B.1.177.870.000728
ORF1010P10QcCgcAg11B.1.20.000009
ORF1010P10TCcgAcg11B.1.20.000009
ORF1010P10SCcgTcg11B.1.2060.000816
ORF1010P10LcCgcTg11B.1.2210.000071
ORF1010P10PccGccA11B.1.2210.000071
ORF1010P10SCcgTcg11B.1.2220.001692
ORF1010P10PccGccT11B.1.2320.000537
ORF1010P10PccGccA11B.1.2390.001221
ORF1010P10LcCgcTg11B.1.2410.000812
ORF1010P10SCcgTcg11B.1.2410.000812
ORF1010P10ACcgGcg11B.1.2580.000067
ORF1010P10delCCG---11B.1.258.160.001637
ORF1010P10PccGccT11B.1.2760.016949
ORF1010P10LcCgcTg11B.1.2790.000514
ORF1010P10SCcgTcg11B.1.2790.000514
ORF1010P10SCcgTcg11B.1.2810.021739
ORF1010P10SCcgTcg11B.1.2840.013158
ORF1010P10delCCG---11B.1.3050.002151
ORF1010P10LcCgcTg11B.1.3110.000275
ORF1010P10SCcgTcg11B.1.3330.010526
ORF1010P10delCCG---11B.1.3540.043478
ORF1010P10SCcgTcg11B.1.360.000146
ORF1010P10LcCgcTg11B.1.36.10.00114
ORF1010P10PccGccA11B.1.36.10.00114
ORF1010P10PccGccT11B.1.36.100.004785
ORF1010P10SCcgTcg11B.1.36.160.001425
ORF1010P10SCcgTcg11B.1.36.170.000494
ORF1010P10SCcgTcg11B.1.36.180.00042
ORF1010P10LcCgcTg11B.1.36.220.001208
ORF1010P10LcCgcTg11B.1.36.290.000517
ORF1010P10QcCgcAg11B.1.36.290.000517
ORF1010P10LcCgcTg11B.1.36.380.001642
ORF1010P10SCcgTcg11B.1.36.390.002217
ORF1010P10TCcgAcg11B.1.36.80.001
ORF1010P10LcCgcTg11B.1.3750.00082
ORF1010P10SCcgTcg11B.1.3770.004566
ORF1010P10delCCG---11B.1.3970.004854
ORF1010P10SCcgTcg11B.1.4000.000429
ORF1010P10delCCG---11B.1.4000.000429
ORF1010P10delCCG---11B.1.4290.000024
ORF1010P10delCCG---11B.1.438.10.000107
ORF1010P10PccGccA11B.1.4530.003236
ORF1010P10SCcgTcg11B.1.4620.007246
ORF1010P10LcCgcTg11B.1.466.10.007194
ORF1010P10del1Ccg-cg11B.1.4680.005714
ORF1010P10PccGccT11B.1.4690.00361
ORF1010P10SCcgTcg11B.1.4700.001404
ORF1010P10FCCGTTC11B.1.4970.000315
ORF1010P10LcCgcTg11B.1.4970.000315
ORF1010P10SCcgTcg11B.1.5030.002488
ORF1010P10SCcgTcg11B.1.5240.001406
ORF1010P10delCCG---11B.1.5250.000113
ORF1010P10SCcgTcg11B.1.5250.000113
ORF1010P10LcCgcTg11B.1.5250.000113
ORF1010P10PccGccA11B.1.5400.009709
ORF1010P10LcCgcTg11B.1.5610.000397
ORF1010P10SCcgTcg11B.1.5610.000397
ORF1010P10LcCgcTg11B.1.5670.003333
ORF1010P10delCCG---11B.1.5760.000907
ORF1010P10PccGccA11B.1.5950.000261
ORF1010P10LcCgcTg11B.1.595.30.026316
ORF1010P10PccGccC11B.1.5960.000087
ORF1010P10delCCG---11B.1.5960.000087
ORF1010P10del1Ccg-cg11B.1.5960.000087
ORF1010P10SCcgTcg11B.1.5970.00463
ORF1010P10RcCgcGg11B.1.6090.000479
ORF1010P10SCcgTcg11B.1.6090.000479
ORF1010P10LCCGTTA11B.1.617.10.000129
ORF1010P10TCcgAcg11B.1.617.10.000129
ORF1010P10RcCGcGT11B.1.617.20.000004
ORF1010P10del2CCg--g11B.1.6210.000089
ORF1010P10SCcgTcg11B.1.6260.005714
ORF1010P10SCcgTcg11B.1.6270.00202
ORF1010P10PccGccA11B.1.6270.00202
ORF1010P10LcCgcTg11B.1.6280.000352
ORF1010P10del1Ccg-cg11B.1.6320.006711
ORF1010P10LcCgcTg11B.1.6360.006711
ORF1010P10PccGccT11B.1.810.021277
ORF1010P10PccGccT11B.1.88.10.004808
ORF1010P10PccGccA11B.30.000831
ORF1010P10SCcgTcg11B.580.010204
ORF1010P10PccGccA11C.220.071429
ORF1010P10LcCgcTg11C.300.001727
ORF1010P10LcCgcTg11C.350.000774
ORF1010P10SCcgTcg11C.350.000774
ORF1010P10delCCG---11C.370.000116
ORF1010P10PccGccT11C.370.000116
ORF1010P10PccGccA11D.20.000075
ORF1010P10SCcgTcg11L.30.003546
ORF1010P10PccGccA11L.30.003546
ORF1010P10PccGccA11L.40.05
ORF1010P10del1Ccg-cg11N.50.001767
ORF1010P10SCcgTcg11P.1.120.000484
ORF1010P10delCCG---11P.1.150.000232
ORF1010P10LcCgcTg11P.1.150.000232
ORF1010P10delCCG---11P.1.170.000162
ORF1010P10LcCgcTg11P.1.170.000162
ORF1010P10LcCgcTg11P.1.20.001156
ORF1010P10PccGccT11P.1.70.000319
ORF1010P10SCcgTcg11P.1.70.000319
ORF1010P10LcCgcTg11P.20.000187
ORF1010P10PccGccA11P.30.001595
ORF1010P10TCcgAcg11P.60.003145
ORF1010P10LcCgcTg11Q.10.000126
ORF1010P10PccGccT11Q.80.000165
ORF1010P10ACcgGcg11R.10.00009
ORF1010P10SCcgTcg11R.10.00009
ORF1010P10QcCgcAg11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.