CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 392 | V392V | syn | gtG | gtT | 10425 | 9727 | 0.933046 | 29447-29449 | |
N | 392 | V392V | syn | gtG | gtC | 10425 | 562 | 0.0539089 | 29447-29449 | |
N | 392 | V392V | syn | gtG | gtA | 10425 | 136 | 0.0130456 | 29447-29449 |
Details of the mutation V392V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 392 | V392V | gtG | gtT | 9727 | 10425 | All | 0.00186 |
N | 392 | V392V | gtG | gtC | 562 | 10425 | All | 0.000107 |
N | 392 | V392V | gtG | gtA | 136 | 10425 | All | 0.000026 |
N | 392 | V392V | gtG | gtT | 1737 | 1827 | AY.4 | 0.002704 |
N | 392 | V392V | gtG | gtC | 86 | 1827 | AY.4 | 0.000134 |
N | 392 | V392V | gtG | gtA | 4 | 1827 | AY.4 | 0.000006 |
N | 392 | V392V | gtG | gtT | 1024 | 1060 | B.1.1.7 | 0.000917 |
N | 392 | V392V | gtG | gtC | 21 | 1060 | B.1.1.7 | 0.000019 |
N | 392 | V392V | gtG | gtA | 15 | 1060 | B.1.1.7 | 0.000013 |
N | 392 | V392V | gtG | gtT | 674 | 687 | AY.44 | 0.004102 |
N | 392 | V392V | gtG | gtC | 7 | 687 | AY.44 | 0.000043 |
N | 392 | V392V | gtG | gtA | 6 | 687 | AY.44 | 0.000037 |
N | 392 | V392V | gtG | gtT | 554 | 671 | B.1.617.2 | 0.002086 |
N | 392 | V392V | gtG | gtC | 116 | 671 | B.1.617.2 | 0.000437 |
N | 392 | V392V | gtG | gtA | 1 | 671 | B.1.617.2 | 0.000004 |
N | 392 | V392V | gtG | gtT | 551 | 563 | AY.25 | 0.003314 |
N | 392 | V392V | gtG | gtC | 12 | 563 | AY.25 | 0.000072 |
N | 392 | V392V | gtG | gtT | 456 | 457 | AY.9 | 0.030823 |
N | 392 | V392V | gtG | gtC | 1 | 457 | AY.9 | 0.000068 |
N | 392 | V392V | gtG | gtT | 406 | 434 | AY.43 | 0.001799 |
N | 392 | V392V | gtG | gtC | 26 | 434 | AY.43 | 0.000115 |
N | 392 | V392V | gtG | gtA | 2 | 434 | AY.43 | 0.000009 |
N | 392 | V392V | gtG | gtT | 383 | 385 | AY.5 | 0.007909 |
N | 392 | V392V | gtG | gtA | 2 | 385 | AY.5 | 0.000041 |
N | 392 | V392V | gtG | gtT | 377 | 377 | B.1.1.222 | 0.076907 |
N | 392 | V392V | gtG | gtT | 288 | 290 | B.1.2 | 0.002536 |
N | 392 | V392V | gtG | gtA | 1 | 290 | B.1.2 | 0.000009 |
N | 392 | V392V | gtG | gtC | 1 | 290 | B.1.2 | 0.000009 |
N | 392 | V392V | gtG | gtT | 240 | 254 | B.1 | 0.002198 |
N | 392 | V392V | gtG | gtC | 14 | 254 | B.1 | 0.000128 |
N | 392 | V392V | gtG | gtT | 173 | 209 | P.1 | 0.002725 |
N | 392 | V392V | gtG | gtC | 31 | 209 | P.1 | 0.000488 |
N | 392 | V392V | gtG | gtA | 5 | 209 | P.1 | 0.000079 |
N | 392 | V392V | gtG | gtT | 208 | 208 | B.1.575.2 | 1 |
N | 392 | V392V | gtG | gtT | 97 | 121 | AY.103 | 0.000602 |
N | 392 | V392V | gtG | gtA | 18 | 121 | AY.103 | 0.000112 |
N | 392 | V392V | gtG | gtC | 6 | 121 | AY.103 | 0.000037 |
N | 392 | V392V | gtG | gtT | 115 | 119 | AY.98.1 | 0.00557 |
N | 392 | V392V | gtG | gtA | 3 | 119 | AY.98.1 | 0.000145 |
N | 392 | V392V | gtG | gtC | 1 | 119 | AY.98.1 | 0.000048 |
N | 392 | V392V | gtG | gtT | 96 | 118 | AY.3 | 0.000955 |
N | 392 | V392V | gtG | gtA | 18 | 118 | AY.3 | 0.000179 |
N | 392 | V392V | gtG | gtC | 4 | 118 | AY.3 | 0.00004 |
N | 392 | V392V | gtG | gtT | 115 | 115 | B.1.526 | 0.002703 |
N | 392 | V392V | gtG | gtT | 82 | 82 | B.1.243 | 0.005706 |
N | 392 | V392V | gtG | gtT | 72 | 79 | AY.39 | 0.001779 |
N | 392 | V392V | gtG | gtC | 7 | 79 | AY.39 | 0.000173 |
N | 392 | V392V | gtG | gtT | 56 | 74 | AY.102 | 0.001485 |
N | 392 | V392V | gtG | gtC | 18 | 74 | AY.102 | 0.000477 |
N | 392 | V392V | gtG | gtT | 67 | 71 | B.1.1 | 0.001215 |
N | 392 | V392V | gtG | gtC | 4 | 71 | B.1.1 | 0.000073 |
N | 392 | V392V | gtG | gtC | 68 | 70 | AY.75 | 0.00381 |
N | 392 | V392V | gtG | gtT | 2 | 70 | AY.75 | 0.000112 |
N | 392 | V392V | gtG | gtT | 60 | 60 | B.1.177.21 | 0.004588 |
N | 392 | V392V | gtG | gtT | 54 | 57 | AY.47 | 0.00168 |
N | 392 | V392V | gtG | gtC | 2 | 57 | AY.47 | 0.000062 |
N | 392 | V392V | gtG | gtA | 1 | 57 | AY.47 | 0.000031 |
N | 392 | V392V | gtG | gtT | 56 | 57 | AY.9.2 | 0.002057 |
N | 392 | V392V | gtG | gtC | 1 | 57 | AY.9.2 | 0.000037 |
N | 392 | V392V | gtG | gtT | 52 | 53 | B.1.429 | 0.001224 |
N | 392 | V392V | gtG | gtC | 1 | 53 | B.1.429 | 0.000024 |
N | 392 | V392V | gtG | gtT | 47 | 49 | AY.120 | 0.001747 |
N | 392 | V392V | gtG | gtC | 2 | 49 | AY.120 | 0.000074 |
N | 392 | V392V | gtG | gtT | 44 | 45 | AY.20 | 0.00171 |
N | 392 | V392V | gtG | gtC | 1 | 45 | AY.20 | 0.000039 |
N | 392 | V392V | gtG | gtT | 45 | 45 | Q.1 | 0.005685 |
N | 392 | V392V | gtG | gtA | 22 | 41 | B.1.258 | 0.001464 |
N | 392 | V392V | gtG | gtT | 18 | 41 | B.1.258 | 0.001198 |
N | 392 | V392V | gtG | gtC | 1 | 41 | B.1.258 | 0.000067 |
N | 392 | V392V | gtG | gtT | 40 | 41 | P.1.14 | 0.001912 |
N | 392 | V392V | gtG | gtC | 1 | 41 | P.1.14 | 0.000048 |
N | 392 | V392V | gtG | gtT | 36 | 38 | B.1.177 | 0.000474 |
N | 392 | V392V | gtG | gtA | 1 | 38 | B.1.177 | 0.000013 |
N | 392 | V392V | gtG | gtC | 1 | 38 | B.1.177 | 0.000013 |
N | 392 | V392V | gtG | gtT | 22 | 37 | AY.100 | 0.001012 |
N | 392 | V392V | gtG | gtC | 12 | 37 | AY.100 | 0.000552 |
N | 392 | V392V | gtG | gtA | 3 | 37 | AY.100 | 0.000138 |
N | 392 | V392V | gtG | gtT | 33 | 34 | B.1.1.519 | 0.00131 |
N | 392 | V392V | gtG | gtA | 1 | 34 | B.1.1.519 | 0.00004 |
N | 392 | V392V | gtG | gtT | 34 | 34 | B.1.361 | 0.043814 |
N | 392 | V392V | gtG | gtT | 27 | 32 | AY.119 | 0.000953 |
N | 392 | V392V | gtG | gtC | 4 | 32 | AY.119 | 0.000141 |
N | 392 | V392V | gtG | gtA | 1 | 32 | AY.119 | 0.000035 |
N | 392 | V392V | gtG | gtT | 31 | 31 | AY.6 | 0.001275 |
N | 392 | V392V | gtG | gtT | 31 | 31 | C.37 | 0.003598 |
N | 392 | V392V | gtG | gtT | 30 | 30 | AY.4.2.1 | 0.00447 |
N | 392 | V392V | gtG | gtT | 19 | 30 | B.1.621 | 0.001682 |
N | 392 | V392V | gtG | gtA | 9 | 30 | B.1.621 | 0.000797 |
N | 392 | V392V | gtG | gtC | 2 | 30 | B.1.621 | 0.000177 |
N | 392 | V392V | gtG | gtT | 28 | 28 | A | 0.010836 |
N | 392 | V392V | gtG | gtT | 28 | 28 | D.2 | 0.002101 |
N | 392 | V392V | gtG | gtT | 27 | 27 | AY.26 | 0.000764 |
N | 392 | V392V | gtG | gtT | 24 | 27 | B.1.351 | 0.000713 |
N | 392 | V392V | gtG | gtC | 2 | 27 | B.1.351 | 0.000059 |
N | 392 | V392V | gtG | gtA | 1 | 27 | B.1.351 | 0.00003 |
N | 392 | V392V | gtG | gtT | 26 | 26 | B.1.1.451 | 1 |
N | 392 | V392V | gtG | gtC | 20 | 25 | AY.14 | 0.00176 |
N | 392 | V392V | gtG | gtT | 5 | 25 | AY.14 | 0.00044 |
N | 392 | V392V | gtG | gtT | 23 | 23 | AY.54 | 0.002193 |
N | 392 | V392V | gtG | gtT | 23 | 23 | AY.94 | 0.010181 |
N | 392 | V392V | gtG | gtT | 23 | 23 | B.1.1.15 | 0.310811 |
N | 392 | V392V | gtG | gtT | 21 | 22 | AY.42 | 0.000845 |
N | 392 | V392V | gtG | gtC | 1 | 22 | AY.42 | 0.00004 |
N | 392 | V392V | gtG | gtT | 20 | 21 | AY.46 | 0.002082 |
N | 392 | V392V | gtG | gtC | 1 | 21 | AY.46 | 0.000104 |
N | 392 | V392V | gtG | gtT | 21 | 21 | AY.86 | 0.017427 |
N | 392 | V392V | gtG | gtT | 19 | 20 | AY.12 | 0.006005 |
N | 392 | V392V | gtG | gtC | 1 | 20 | AY.12 | 0.000316 |
N | 392 | V392V | gtG | gtT | 20 | 20 | AY.13 | 0.00322 |
N | 392 | V392V | gtG | gtT | 20 | 20 | AY.49 | 0.063898 |
N | 392 | V392V | gtG | gtT | 20 | 20 | B.1.1.192 | 0.046189 |
N | 392 | V392V | gtG | gtT | 20 | 20 | B.1.160 | 0.000624 |
N | 392 | V392V | gtG | gtT | 15 | 18 | AY.29 | 0.000237 |
N | 392 | V392V | gtG | gtC | 3 | 18 | AY.29 | 0.000047 |
N | 392 | V392V | gtG | gtT | 18 | 18 | AY.3.1 | 0.001535 |
N | 392 | V392V | gtG | gtT | 18 | 18 | AY.39.1 | 0.000713 |
N | 392 | V392V | gtG | gtT | 18 | 18 | AY.5.4 | 0.004981 |
N | 392 | V392V | gtG | gtT | 15 | 17 | B.1.1.306 | 0.006576 |
N | 392 | V392V | gtG | gtC | 2 | 17 | B.1.1.306 | 0.000877 |
N | 392 | V392V | gtG | gtT | 16 | 16 | AY.46.5 | 0.003175 |
N | 392 | V392V | gtG | gtT | 16 | 16 | AY.74 | 0.00185 |
N | 392 | V392V | gtG | gtT | 16 | 16 | B.1.36 | 0.002334 |
N | 392 | V392V | gtG | gtT | 15 | 15 | AY.121 | 0.00203 |
N | 392 | V392V | gtG | gtT | 15 | 15 | B | 0.001917 |
N | 392 | V392V | gtG | gtT | 13 | 14 | AY.118 | 0.000814 |
N | 392 | V392V | gtG | gtC | 1 | 14 | AY.118 | 0.000063 |
N | 392 | V392V | gtG | gtT | 13 | 13 | AY.4.2 | 0.000282 |
N | 392 | V392V | gtG | gtC | 13 | 13 | B.1.177.33 | 0.021382 |
N | 392 | V392V | gtG | gtT | 13 | 13 | B.1.435 | 0.147727 |
N | 392 | V392V | gtG | gtT | 13 | 13 | B.1.582 | 0.006379 |
N | 392 | V392V | gtG | gtT | 9 | 12 | AY.46.4 | 0.001481 |
N | 392 | V392V | gtG | gtC | 2 | 12 | AY.46.4 | 0.000329 |
N | 392 | V392V | gtG | gtA | 1 | 12 | AY.46.4 | 0.000165 |
N | 392 | V392V | gtG | gtT | 12 | 12 | B.1.36.29 | 0.006208 |
N | 392 | V392V | gtG | gtT | 12 | 12 | B.1.427 | 0.000606 |
N | 392 | V392V | gtG | gtT | 11 | 12 | B.1.466.2 | 0.004304 |
N | 392 | V392V | gtG | gtA | 1 | 12 | B.1.466.2 | 0.000391 |
N | 392 | V392V | gtG | gtT | 12 | 12 | B.1.628 | 0.004228 |
N | 392 | V392V | gtG | gtT | 11 | 11 | AY.16 | 0.004176 |
N | 392 | V392V | gtG | gtT | 11 | 11 | AY.5.2 | 0.027094 |
N | 392 | V392V | gtG | gtT | 9 | 11 | B.1.637 | 0.000658 |
N | 392 | V392V | gtG | gtA | 2 | 11 | B.1.637 | 0.000146 |
N | 392 | V392V | gtG | gtT | 11 | 11 | N.5 | 0.019435 |
N | 392 | V392V | gtG | gtT | 10 | 10 | AY.33 | 0.000668 |
N | 392 | V392V | gtG | gtT | 10 | 10 | AY.46.6 | 0.000722 |
N | 392 | V392V | gtG | gtT | 10 | 10 | AY.9.1 | 0.000837 |
N | 392 | V392V | gtG | gtT | 10 | 10 | AY.99.2 | 0.000922 |
N | 392 | V392V | gtG | gtC | 10 | 10 | B.1.502 | 0.526316 |
N | 392 | V392V | gtG | gtT | 9 | 9 | AY.115 | 0.046875 |
N | 392 | V392V | gtG | gtT | 6 | 9 | AY.117 | 0.000507 |
N | 392 | V392V | gtG | gtC | 3 | 9 | AY.117 | 0.000254 |
N | 392 | V392V | gtG | gtT | 8 | 9 | AY.45 | 0.000973 |
N | 392 | V392V | gtG | gtC | 1 | 9 | AY.45 | 0.000122 |
N | 392 | V392V | gtG | gtT | 9 | 9 | AY.61 | 0.000943 |
N | 392 | V392V | gtG | gtT | 8 | 9 | AY.85 | 0.003417 |
N | 392 | V392V | gtG | gtC | 1 | 9 | AY.85 | 0.000427 |
N | 392 | V392V | gtG | gtT | 8 | 9 | B.1.1.214 | 0.000444 |
N | 392 | V392V | gtG | gtC | 1 | 9 | B.1.1.214 | 0.000055 |
N | 392 | V392V | gtG | gtT | 9 | 9 | B.1.393 | 0.257143 |
N | 392 | V392V | gtG | gtT | 6 | 9 | B.1.561 | 0.002382 |
N | 392 | V392V | gtG | gtC | 3 | 9 | B.1.561 | 0.001191 |
N | 392 | V392V | gtG | gtT | 9 | 9 | B.1.572 | 0.225 |
N | 392 | V392V | gtG | gtT | 8 | 8 | AY.34 | 0.000776 |
N | 392 | V392V | gtG | gtT | 8 | 8 | AY.36 | 0.001186 |
N | 392 | V392V | gtG | gtT | 8 | 8 | AY.7.1 | 0.000902 |
N | 392 | V392V | gtG | gtT | 8 | 8 | AY.72 | 0.010884 |
N | 392 | V392V | gtG | gtT | 8 | 8 | AY.92 | 0.002298 |
N | 392 | V392V | gtG | gtT | 8 | 8 | B.1.1.28 | 0.00249 |
N | 392 | V392V | gtG | gtT | 7 | 8 | B.1.1.318 | 0.002112 |
N | 392 | V392V | gtG | gtA | 1 | 8 | B.1.1.318 | 0.000302 |
N | 392 | V392V | gtG | gtT | 5 | 8 | B.1.221 | 0.000355 |
N | 392 | V392V | gtG | gtC | 3 | 8 | B.1.221 | 0.000213 |
N | 392 | V392V | gtG | gtT | 6 | 8 | B.1.258.17 | 0.000624 |
N | 392 | V392V | gtG | gtC | 2 | 8 | B.1.258.17 | 0.000208 |
N | 392 | V392V | gtG | gtT | 8 | 8 | B.1.369 | 0.002282 |
N | 392 | V392V | gtG | gtT | 7 | 8 | Q.8 | 0.001154 |
N | 392 | V392V | gtG | gtA | 1 | 8 | Q.8 | 0.000165 |
N | 392 | V392V | gtG | gtT | 7 | 7 | AY.41 | 0.002058 |
N | 392 | V392V | gtG | gtT | 5 | 7 | AY.68 | 0.001369 |
N | 392 | V392V | gtG | gtC | 1 | 7 | AY.68 | 0.000274 |
N | 392 | V392V | gtG | gtA | 1 | 7 | AY.68 | 0.000274 |
N | 392 | V392V | gtG | gtT | 6 | 7 | B.1.609 | 0.002876 |
N | 392 | V392V | gtG | gtA | 1 | 7 | B.1.609 | 0.000479 |
N | 392 | V392V | gtG | gtT | 6 | 7 | B.1.617.1 | 0.000774 |
N | 392 | V392V | gtG | gtC | 1 | 7 | B.1.617.1 | 0.000129 |
N | 392 | V392V | gtG | gtT | 6 | 6 | AY.23 | 0.000418 |
N | 392 | V392V | gtG | gtT | 6 | 6 | AY.91 | 0.004383 |
N | 392 | V392V | gtG | gtT | 6 | 6 | B.1.1.1 | 0.00196 |
N | 392 | V392V | gtG | gtT | 6 | 6 | B.1.1.39 | 0.003058 |
N | 392 | V392V | gtG | gtT | 6 | 6 | B.1.1.44 | 0.014458 |
N | 392 | V392V | gtG | gtT | 6 | 6 | B.1.177.77 | 0.004357 |
N | 392 | V392V | gtG | gtT | 6 | 6 | B.1.597 | 0.027778 |
N | 392 | V392V | gtG | gtT | 6 | 6 | P.1.17.1 | 0.005249 |
N | 392 | V392V | gtG | gtT | 3 | 5 | AY.106 | 0.001005 |
N | 392 | V392V | gtG | gtA | 1 | 5 | AY.106 | 0.000335 |
N | 392 | V392V | gtG | gtC | 1 | 5 | AY.106 | 0.000335 |
N | 392 | V392V | gtG | gtT | 5 | 5 | AY.73 | 0.003327 |
N | 392 | V392V | gtG | gtT | 4 | 5 | AY.75.1 | 0.000721 |
N | 392 | V392V | gtG | gtC | 1 | 5 | AY.75.1 | 0.00018 |
N | 392 | V392V | gtG | gtT | 5 | 5 | B.1.1.163 | 0.038168 |
N | 392 | V392V | gtG | gtC | 3 | 5 | B.1.362 | 0.004622 |
N | 392 | V392V | gtG | gtT | 2 | 5 | B.1.362 | 0.003082 |
N | 392 | V392V | gtG | gtT | 5 | 5 | C.11 | 0.053191 |
N | 392 | V392V | gtG | gtT | 5 | 5 | P.1.2 | 0.00578 |
N | 392 | V392V | gtG | gtT | 4 | 4 | AD.2 | 0.000876 |
N | 392 | V392V | gtG | gtT | 4 | 4 | AY.113 | 0.00057 |
N | 392 | V392V | gtG | gtT | 4 | 4 | AY.120.2.1 | 0.001993 |
N | 392 | V392V | gtG | gtT | 4 | 4 | AY.24 | 0.001724 |
N | 392 | V392V | gtG | gtT | 4 | 4 | AY.27 | 0.000259 |
N | 392 | V392V | gtG | gtT | 3 | 4 | AY.64 | 0.001786 |
N | 392 | V392V | gtG | gtC | 1 | 4 | AY.64 | 0.000595 |
N | 392 | V392V | gtG | gtT | 4 | 4 | AY.69 | 0.000747 |
N | 392 | V392V | gtG | gtT | 3 | 4 | AY.98 | 0.000237 |
N | 392 | V392V | gtG | gtC | 1 | 4 | AY.98 | 0.000079 |
N | 392 | V392V | gtG | gtC | 2 | 4 | B.1.1.216 | 0.001781 |
N | 392 | V392V | gtG | gtT | 2 | 4 | B.1.1.216 | 0.001781 |
N | 392 | V392V | gtG | gtT | 4 | 4 | B.1.1.277 | 0.003035 |
N | 392 | V392V | gtG | gtT | 4 | 4 | B.1.177.6 | 0.003906 |
N | 392 | V392V | gtG | gtA | 3 | 4 | B.1.438.1 | 0.000322 |
N | 392 | V392V | gtG | gtT | 1 | 4 | B.1.438.1 | 0.000107 |
N | 392 | V392V | gtG | gtT | 4 | 4 | B.1.517 | 0.001708 |
N | 392 | V392V | gtG | gtT | 4 | 4 | B.1.525 | 0.000453 |
N | 392 | V392V | gtG | gtT | 4 | 4 | B.1.575 | 0.001214 |
N | 392 | V392V | gtG | gtT | 4 | 4 | B.1.596 | 0.000349 |
N | 392 | V392V | gtG | gtT | 3 | 4 | C.36 | 0.002732 |
N | 392 | V392V | gtG | gtC | 1 | 4 | C.36 | 0.000911 |
N | 392 | V392V | gtG | gtT | 4 | 4 | P.1.12 | 0.001936 |
N | 392 | V392V | gtG | gtT | 4 | 4 | P.2 | 0.000747 |
N | 392 | V392V | gtG | gtT | 3 | 3 | AY.104 | 0.005952 |
N | 392 | V392V | gtG | gtT | 2 | 3 | AY.108 | 0.002205 |
N | 392 | V392V | gtG | gtA | 1 | 3 | AY.108 | 0.001103 |
N | 392 | V392V | gtG | gtT | 3 | 3 | AY.120.1 | 0.000963 |
N | 392 | V392V | gtG | gtC | 2 | 3 | AY.34.1 | 0.00102 |
N | 392 | V392V | gtG | gtT | 1 | 3 | AY.34.1 | 0.00051 |
N | 392 | V392V | gtG | gtT | 3 | 3 | AY.4.5 | 0.000322 |
N | 392 | V392V | gtG | gtC | 3 | 3 | AY.46.2 | 0.001906 |
N | 392 | V392V | gtG | gtT | 3 | 3 | AY.63 | 0.001161 |
N | 392 | V392V | gtG | gtT | 3 | 3 | AY.84 | 0.001312 |
N | 392 | V392V | gtG | gtT | 3 | 3 | AY.90 | 0.002053 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.1.10 | 0.003344 |
N | 392 | V392V | gtG | gtC | 3 | 3 | B.1.1.354 | 0.013158 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.1.434 | 0.001046 |
N | 392 | V392V | gtG | gtA | 2 | 3 | B.1.1.58 | 0.010753 |
N | 392 | V392V | gtG | gtT | 1 | 3 | B.1.1.58 | 0.005376 |
N | 392 | V392V | gtG | gtC | 3 | 3 | B.1.177.10 | 0.002634 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.177.15 | 0.001893 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.177.35 | 0.002073 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.240 | 0.000647 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.281 | 0.065217 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.329 | 0.001823 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.346 | 0.003932 |
N | 392 | V392V | gtG | gtA | 3 | 3 | B.1.351.2 | 0.000908 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.400 | 0.001287 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.466.1 | 0.021583 |
N | 392 | V392V | gtG | gtT | 3 | 3 | B.1.588 | 0.00273 |
N | 392 | V392V | gtG | gtT | 3 | 3 | P.1.10 | 0.000808 |
N | 392 | V392V | gtG | gtT | 3 | 3 | Q.3 | 0.000435 |
N | 392 | V392V | gtG | gtT | 2 | 2 | A.2 | 0.001324 |
N | 392 | V392V | gtG | gtC | 2 | 2 | A.23.1 | 0.001408 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AH.3 | 0.007605 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.1 | 0.000791 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.109 | 0.001479 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.111 | 0.000366 |
N | 392 | V392V | gtG | gtT | 1 | 2 | AY.116 | 0.000287 |
N | 392 | V392V | gtG | gtC | 1 | 2 | AY.116 | 0.000287 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.116.1 | 0.000623 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.16.1 | 0.00094 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.2 | 0.000712 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.22 | 0.004184 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.30 | 0.000791 |
N | 392 | V392V | gtG | gtC | 1 | 2 | AY.37 | 0.000316 |
N | 392 | V392V | gtG | gtT | 1 | 2 | AY.37 | 0.000316 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.5.3 | 0.000675 |
N | 392 | V392V | gtG | gtT | 1 | 2 | AY.59 | 0.00053 |
N | 392 | V392V | gtG | gtC | 1 | 2 | AY.59 | 0.00053 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.60 | 0.001876 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.77 | 0.002255 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.88 | 0.001768 |
N | 392 | V392V | gtG | gtT | 2 | 2 | AY.99 | 0.002099 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.153 | 0.002191 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.198 | 0.002937 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.243 | 0.008163 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.25 | 0.001137 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.284 | 0.000215 |
N | 392 | V392V | gtG | gtC | 1 | 2 | B.1.1.294 | 0.001266 |
N | 392 | V392V | gtG | gtT | 1 | 2 | B.1.1.294 | 0.001266 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.316 | 0.00185 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.33 | 0.000842 |
N | 392 | V392V | gtG | gtT | 1 | 2 | B.1.1.372 | 0.000689 |
N | 392 | V392V | gtG | gtA | 1 | 2 | B.1.1.372 | 0.000689 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.416 | 0.00181 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.1.512 | 0.057143 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.157 | 0.00597 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.177.81 | 0.000379 |
N | 392 | V392V | gtG | gtC | 2 | 2 | B.1.177.86 | 0.000367 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.351.3 | 0.001753 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.389 | 0.002004 |
N | 392 | V392V | gtG | gtC | 2 | 2 | B.1.413 | 0.008511 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.474 | 0.003802 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.499 | 0.002101 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.516 | 0.003914 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.564.1 | 0.003155 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.580 | 0.00813 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.617.3 | 0.00597 |
N | 392 | V392V | gtG | gtT | 2 | 2 | B.1.619 | 0.001742 |
N | 392 | V392V | gtG | gtT | 2 | 2 | P.1.1 | 0.000635 |
N | 392 | V392V | gtG | gtA | 1 | 2 | P.1.15 | 0.000232 |
N | 392 | V392V | gtG | gtT | 1 | 2 | P.1.15 | 0.000232 |
N | 392 | V392V | gtG | gtT | 2 | 2 | P.1.16 | 0.000748 |
N | 392 | V392V | gtG | gtT | 2 | 2 | R.1 | 0.00018 |
N | 392 | V392V | gtG | gtT | 1 | 1 | A.2.5 | 0.000499 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.10 | 0.00053 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.21 | 0.001898 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.32 | 0.000532 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.35 | 0.000233 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.38 | 0.000499 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.46.1 | 0.001027 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.46.3 | 0.000934 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.51 | 0.000909 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.52 | 0.000814 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.55 | 0.000917 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.56 | 0.001605 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.67 | 0.000464 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.7 | 0.000196 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.78 | 0.001541 |
N | 392 | V392V | gtG | gtA | 1 | 1 | AY.83 | 0.001724 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.87 | 0.000833 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.95 | 0.000761 |
N | 392 | V392V | gtG | gtT | 1 | 1 | AY.99.1 | 0.001553 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.111 | 0.014706 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.159 | 0.004673 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.161 | 0.003534 |
N | 392 | V392V | gtG | gtC | 1 | 1 | B.1.1.170 | 0.001247 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.174 | 0.003378 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.177 | 0.019231 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.194 | 0.00495 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.205 | 0.003717 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.207 | 0.001182 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.210 | 0.005714 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.225 | 0.007194 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.232 | 0.001815 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.254 | 0.011236 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.261 | 0.008621 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.27 | 0.00565 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.291 | 0.000742 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.297 | 0.002237 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.311 | 0.000358 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.317 | 0.000412 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.322 | 0.008772 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.326 | 0.001761 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.329 | 0.003846 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.335 | 0.012987 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.368 | 0.003086 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.369 | 0.000446 |
N | 392 | V392V | gtG | gtC | 1 | 1 | B.1.1.376 | 0.005952 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.389 | 0.006061 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.396 | 0.045455 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.398 | 0.003226 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.432 | 0.001266 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.435 | 0.034483 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.440 | 0.011765 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.448 | 0.002033 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.487 | 0.005587 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.49 | 0.017544 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.500 | 0.02 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.54 | 0.003021 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.1.63 | 0.000386 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.110.3 | 0.000718 |
N | 392 | V392V | gtG | gtC | 1 | 1 | B.1.111 | 0.001175 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.160.8 | 0.001289 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.177.19 | 0.001431 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.177.53 | 0.002392 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.177.56 | 0.000668 |
N | 392 | V392V | gtG | gtA | 1 | 1 | B.1.177.63 | 0.002703 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.198 | 0.071429 |
N | 392 | V392V | gtG | gtC | 1 | 1 | B.1.201 | 0.005682 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.218 | 0.005155 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.22 | 0.001318 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.227 | 0.047619 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.234 | 0.000132 |
N | 392 | V392V | gtG | gtC | 1 | 1 | B.1.239 | 0.001221 |
N | 392 | V392V | gtG | gtC | 1 | 1 | B.1.279 | 0.000514 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.3 | 0.002618 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.332 | 0.003497 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.333 | 0.010526 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.336 | 0.002439 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.349 | 0.000715 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.356 | 0.001727 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.36.7 | 0.004 |
N | 392 | V392V | gtG | gtC | 1 | 1 | B.1.367 | 0.000792 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.381 | 0.007812 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.521 | 0.004975 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.549 | 0.007194 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.591 | 0.010638 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.620 | 0.000946 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.623 | 0.000536 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.633 | 0.041667 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.84 | 0.020833 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.1.9.4 | 0.006135 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.3 | 0.000831 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.35 | 0.007812 |
N | 392 | V392V | gtG | gtT | 1 | 1 | B.40 | 0.000364 |
N | 392 | V392V | gtG | gtT | 1 | 1 | C.1.2 | 0.004255 |
N | 392 | V392V | gtG | gtT | 1 | 1 | C.30 | 0.001727 |
N | 392 | V392V | gtG | gtT | 1 | 1 | D.3 | 0.005917 |
N | 392 | V392V | gtG | gtT | 1 | 1 | N.9 | 0.005952 |
N | 392 | V392V | gtG | gtC | 1 | 1 | P.1.17 | 0.000162 |
N | 392 | V392V | gtG | gtT | 1 | 1 | P.5 | 0.013699 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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