CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = T366I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	366	T366I		nonsyn	aCa	aTa	13088	13078	0.999236	29369-29371
N	366	T366I		nonsyn	aCA	aTT	13088	8	0.000611247	29369-29371
N	366	T366I		nonsyn	aCA	aTC	13088	2	0.000152812	29369-29371

Details of the mutation T366I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	366	T366I	aCa	aTa	13078	13088	All	0.002501
N	366	T366I	aCA	aTT	8	13088	All	0.000002
N	366	T366I	aCA	aTC	2	13088	All	0
N	366	T366I	aCa	aTa	2703	2703	C.37	0.313719
N	366	T366I	aCa	aTa	1780	1786	B.1.1.7	0.001593
N	366	T366I	aCA	aTT	4	1786	B.1.1.7	0.000004
N	366	T366I	aCA	aTC	2	1786	B.1.1.7	0.000002
N	366	T366I	aCa	aTa	1016	1016	AY.4	0.001581
N	366	T366I	aCa	aTa	996	996	B.1.1.348	0.792994
N	366	T366I	aCa	aTa	789	789	AY.4.2	0.017112
N	366	T366I	aCa	aTa	484	484	Q.1	0.061142
N	366	T366I	aCa	aTa	450	450	AY.103	0.002794
N	366	T366I	aCa	aTa	388	388	AY.3	0.003859
N	366	T366I	aCa	aTa	332	332	AY.43	0.001471
N	366	T366I	aCa	aTa	296	296	B.1.596	0.025793
N	366	T366I	aCa	aTa	266	266	B.1.1	0.004825
N	366	T366I	aCa	aTa	228	228	AY.74	0.026368
N	366	T366I	aCa	aTa	221	221	B.1	0.002024
N	366	T366I	aCa	aTa	219	219	AY.44	0.001333
N	366	T366I	aCa	aTa	214	214	B.1.2	0.001884
N	366	T366I	aCa	aTa	199	199	C.37.1	0.520942
N	366	T366I	aCa	aTa	147	147	B.1.617.2	0.000554
N	366	T366I	aCa	aTa	99	100	AY.25	0.000595
N	366	T366I	aCA	aTT	1	100	AY.25	0.000006
N	366	T366I	aCa	aTa	96	96	B.1.177	0.001264
N	366	T366I	aCa	aTa	81	81	P.1	0.001276
N	366	T366I	aCa	aTa	74	74	B.1.1.176	0.032513
N	366	T366I	aCa	aTa	72	72	B.1.428	0.073469
N	366	T366I	aCa	aTa	68	68	B.1.526	0.001598
N	366	T366I	aCa	aTa	62	62	R.1	0.005581
N	366	T366I	aCa	aTa	61	61	B.1.428.3	0.782051
N	366	T366I	aCa	aTa	58	58	B.1.177.82	0.027685
N	366	T366I	aCa	aTa	56	56	B.1.351	0.001665
N	366	T366I	aCa	aTa	54	54	AY.120	0.002008
N	366	T366I	aCa	aTa	51	51	B.1.177.81	0.009655
N	366	T366I	aCa	aTa	46	46	AY.30	0.018203
N	366	T366I	aCa	aTa	45	45	AY.27	0.002912
N	366	T366I	aCa	aTa	43	43	AY.13	0.006922
N	366	T366I	aCa	aTa	39	39	AY.5	0.000805
N	366	T366I	aCa	aTa	39	39	AY.7.1	0.004395
N	366	T366I	aCa	aTa	37	37	AY.26	0.001047
N	366	T366I	aCa	aTa	37	37	AY.29	0.000584
N	366	T366I	aCa	aTa	35	35	AY.20	0.00136
N	366	T366I	aCa	aTa	32	32	AY.39.1	0.001268
N	366	T366I	aCa	aTa	31	31	C.36	0.028233
N	366	T366I	aCa	aTa	30	30	B.1.177.46	0.027548
N	366	T366I	aCa	aTa	29	30	B.1.429	0.000682
N	366	T366I	aCA	aTT	1	30	B.1.429	0.000024
N	366	T366I	aCa	aTa	29	29	AY.24	0.0125
N	366	T366I	aCa	aTa	28	28	B.1.160	0.000873
N	366	T366I	aCa	aTa	27	27	B.1.601	0.818182
N	366	T366I	aCa	aTa	26	26	AY.33	0.001736
N	366	T366I	aCa	aTa	24	24	AY.75	0.001345
N	366	T366I	aCa	aTa	24	24	B.1.1.519	0.000953
N	366	T366I	aCa	aTa	24	24	B.1.427	0.001212
N	366	T366I	aCa	aTa	24	24	B.1.577	0.016495
N	366	T366I	aCa	aTa	21	21	B.1.1.222	0.004284
N	366	T366I	aCa	aTa	20	20	AY.61	0.002096
N	366	T366I	aCa	aTa	20	20	B.1.595	0.005219
N	366	T366I	aCa	aTa	17	17	AY.54	0.001621
N	366	T366I	aCa	aTa	17	17	B.1.637	0.001242
N	366	T366I	aCa	aTa	17	17	P.1.14	0.000813
N	366	T366I	aCa	aTa	15	15	AY.119	0.00053
N	366	T366I	aCa	aTa	15	15	AY.39	0.000371
N	366	T366I	aCa	aTa	14	14	AY.116	0.004015
N	366	T366I	aCa	aTa	14	14	P.1.7	0.00447
N	366	T366I	aCa	aTa	13	13	B.1.177.44	0.006746
N	366	T366I	aCa	aTa	12	12	AY.102	0.000318
N	366	T366I	aCa	aTa	12	12	AY.117	0.001014
N	366	T366I	aCa	aTa	12	12	AY.42	0.000483
N	366	T366I	aCa	aTa	11	11	AY.36	0.00163
N	366	T366I	aCa	aTa	11	11	B.1.617.1	0.001419
N	366	T366I	aCa	aTa	10	10	AY.3.1	0.000853
N	366	T366I	aCa	aTa	10	10	B.1.22	0.013175
N	366	T366I	aCa	aTa	10	10	B.1.621	0.000885
N	366	T366I	aCa	aTa	9	9	AY.23	0.000628
N	366	T366I	aCa	aTa	9	9	B.1.1.291	0.006682
N	366	T366I	aCa	aTa	9	9	B.1.1.307	0.022785
N	366	T366I	aCa	aTa	9	9	B.1.241	0.007305
N	366	T366I	aCa	aTa	9	9	B.1.243	0.000626
N	366	T366I	aCa	aTa	8	8	B.1.1.63	0.003086
N	366	T366I	aCa	aTa	8	8	B.1.146	0.033898
N	366	T366I	aCa	aTa	8	8	B.1.177.21	0.000612
N	366	T366I	aCa	aTa	8	8	B.1.467	0.32
N	366	T366I	aCa	aTa	8	8	B.1.497	0.002518
N	366	T366I	aCa	aTa	7	7	AE.6	0.269231
N	366	T366I	aCa	aTa	7	7	AY.106	0.002344
N	366	T366I	aCa	aTa	7	7	AY.116.1	0.00218
N	366	T366I	aCa	aTa	7	7	AY.98	0.000553
N	366	T366I	aCa	aTa	7	7	C.36.3	0.003971
N	366	T366I	aCa	aTa	7	7	P.2	0.001306
N	366	T366I	aCa	aTa	6	6	AY.118	0.000376
N	366	T366I	aCa	aTa	6	6	AY.37	0.001896
N	366	T366I	aCa	aTa	6	6	AY.9.2	0.00022
N	366	T366I	aCa	aTa	6	6	AY.92	0.001724
N	366	T366I	aCa	aTa	6	6	B.1.1.209	0.053571
N	366	T366I	aCa	aTa	6	6	B.1.177.58	0.007989
N	366	T366I	aCa	aTa	6	6	B.1.177.60	0.001311
N	366	T366I	aCa	aTa	6	6	B.1.258.17	0.000624
N	366	T366I	aCa	aTa	6	6	B.1.265	0.007624
N	366	T366I	aCa	aTa	6	6	B.1.362.2	0.028302
N	366	T366I	aCa	aTa	6	6	B.1.565	0.004862
N	366	T366I	aCa	aTa	6	6	B.1.609	0.002876
N	366	T366I	aCa	aTa	5	5	AY.34	0.000485
N	366	T366I	aCa	aTa	5	5	AY.47	0.000156
N	366	T366I	aCa	aTa	5	5	AY.48	0.002326
N	366	T366I	aCa	aTa	5	5	AY.6	0.000206
N	366	T366I	aCa	aTa	5	5	AY.99.2	0.000461
N	366	T366I	aCa	aTa	5	5	B	0.000639
N	366	T366I	aCa	aTa	5	5	B.1.1.283	0.116279
N	366	T366I	aCa	aTa	5	5	B.1.126	0.006378
N	366	T366I	aCa	aTa	5	5	B.1.177.32	0.006748
N	366	T366I	aCa	aTa	5	5	B.1.177.7	0.000824
N	366	T366I	aCa	aTa	5	5	B.1.177.84	0.033333
N	366	T366I	aCa	aTa	5	5	B.1.258	0.000333
N	366	T366I	aCa	aTa	5	5	B.1.36.1	0.005701
N	366	T366I	aCa	aTa	5	5	B.1.499	0.005252
N	366	T366I	aCa	aTa	5	5	B.1.620	0.00473
N	366	T366I	aCa	aTa	5	5	P.1.15	0.001162
N	366	T366I	aCa	aTa	2	4		0.111111
N	366	T366I	aCA	aTT	2	4		0.111111
N	366	T366I	aCa	aTa	4	4	AY.100	0.000184
N	366	T366I	aCa	aTa	4	4	AY.107	0.001864
N	366	T366I	aCa	aTa	4	4	AY.69	0.000747
N	366	T366I	aCa	aTa	4	4	AY.85	0.001709
N	366	T366I	aCa	aTa	4	4	AY.9.1	0.000335
N	366	T366I	aCa	aTa	4	4	B.1.1.220	0.007435
N	366	T366I	aCa	aTa	4	4	B.1.1.28	0.001245
N	366	T366I	aCa	aTa	4	4	B.1.110.3	0.002874
N	366	T366I	aCa	aTa	4	4	B.1.177.86	0.000734
N	366	T366I	aCa	aTa	4	4	B.1.36	0.000584
N	366	T366I	aCa	aTa	4	4	B.1.627	0.008081
N	366	T366I	aCa	aTa	4	4	B.1.634	0.013699
N	366	T366I	aCa	aTa	4	4	D.2	0.0003
N	366	T366I	aCa	aTa	3	3	A.2.5.3	0.030928
N	366	T366I	aCa	aTa	3	3	A.23.1	0.002113
N	366	T366I	aCa	aTa	3	3	AY.120.2.1	0.001495
N	366	T366I	aCa	aTa	3	3	AY.4.2.1	0.000447
N	366	T366I	aCa	aTa	3	3	AY.46	0.000312
N	366	T366I	aCa	aTa	3	3	AY.46.6	0.000217
N	366	T366I	aCa	aTa	3	3	AY.67	0.001393
N	366	T366I	aCa	aTa	3	3	AY.7	0.000588
N	366	T366I	aCa	aTa	3	3	AY.75.1	0.000541
N	366	T366I	aCa	aTa	3	3	AY.98.1	0.000145
N	366	T366I	aCa	aTa	3	3	AY.99	0.003148
N	366	T366I	aCa	aTa	3	3	B.1.1.1	0.00098
N	366	T366I	aCa	aTa	3	3	B.1.1.153	0.003286
N	366	T366I	aCa	aTa	3	3	B.1.1.214	0.000166
N	366	T366I	aCa	aTa	3	3	B.1.1.269	0.00406
N	366	T366I	aCa	aTa	3	3	B.1.1.416	0.002715
N	366	T366I	aCa	aTa	3	3	B.1.1.417	0.008108
N	366	T366I	aCa	aTa	3	3	B.1.177.12	0.000455
N	366	T366I	aCa	aTa	3	3	B.1.214.3	0.021429
N	366	T366I	aCa	aTa	3	3	B.1.232	0.001612
N	366	T366I	aCa	aTa	3	3	B.1.311	0.000824
N	366	T366I	aCa	aTa	3	3	B.1.350	0.008798
N	366	T366I	aCa	aTa	3	3	B.1.36.27	0.00229
N	366	T366I	aCa	aTa	3	3	B.1.576	0.00272
N	366	T366I	aCa	aTa	3	3	B.1.580	0.012195
N	366	T366I	aCa	aTa	3	3	B.1.628	0.001057
N	366	T366I	aCa	aTa	3	3	B.3	0.002492
N	366	T366I	aCa	aTa	3	3	C.35	0.002322
N	366	T366I	aCa	aTa	3	3	P.1.2	0.003468
N	366	T366I	aCa	aTa	3	3	Q.7	0.003333
N	366	T366I	aCa	aTa	2	2	A	0.000774
N	366	T366I	aCa	aTa	2	2	A.2.5	0.000998
N	366	T366I	aCa	aTa	2	2	AE.8	0.000978
N	366	T366I	aCa	aTa	2	2	AY.110	0.000225
N	366	T366I	aCa	aTa	2	2	AY.16	0.000759
N	366	T366I	aCa	aTa	2	2	AY.16.1	0.00094
N	366	T366I	aCa	aTa	2	2	AY.29.1	0.000441
N	366	T366I	aCa	aTa	2	2	AY.32	0.001065
N	366	T366I	aCa	aTa	2	2	AY.38	0.000999
N	366	T366I	aCa	aTa	2	2	AY.45	0.000243
N	366	T366I	aCa	aTa	2	2	AY.59	0.001059
N	366	T366I	aCa	aTa	2	2	AY.88	0.001768
N	366	T366I	aCa	aTa	2	2	B.1.1.161	0.007067
N	366	T366I	aCa	aTa	2	2	B.1.1.171	0.007353
N	366	T366I	aCa	aTa	2	2	B.1.1.174	0.006757
N	366	T366I	aCa	aTa	2	2	B.1.1.280	0.006173
N	366	T366I	aCa	aTa	2	2	B.1.1.317	0.000823
N	366	T366I	aCa	aTa	2	2	B.1.1.33	0.000842
N	366	T366I	aCa	aTa	2	2	B.1.1.369	0.000892
N	366	T366I	aCa	aTa	2	2	B.1.1.37	0.000386
N	366	T366I	aCa	aTa	2	2	B.1.1.372	0.001377
N	366	T366I	aCa	aTa	2	2	B.1.1.388	0.090909
N	366	T366I	aCa	aTa	2	2	B.1.1.409	0.005666
N	366	T366I	aCa	aTa	2	2	B.1.1.462	0.017241
N	366	T366I	aCa	aTa	2	2	B.1.177.10	0.001756
N	366	T366I	aCa	aTa	2	2	B.1.177.53	0.004785
N	366	T366I	aCa	aTa	2	2	B.1.177.77	0.001452
N	366	T366I	aCa	aTa	2	2	B.1.239	0.002442
N	366	T366I	aCa	aTa	2	2	B.1.245	0.0625
N	366	T366I	aCa	aTa	2	2	B.1.258.11	0.000793
N	366	T366I	aCa	aTa	2	2	B.1.36.29	0.001035
N	366	T366I	aCa	aTa	2	2	B.1.396	0.001411
N	366	T366I	aCa	aTa	2	2	B.1.459	0.008163
N	366	T366I	aCa	aTa	2	2	B.1.525	0.000226
N	366	T366I	aCa	aTa	2	2	B.1.551	0.002581
N	366	T366I	aCa	aTa	2	2	B.1.560	0.009259
N	366	T366I	aCa	aTa	2	2	B.40	0.000729
N	366	T366I	aCa	aTa	1	1	A.1	0.000282
N	366	T366I	aCa	aTa	1	1	A.3	0.002096
N	366	T366I	aCa	aTa	1	1	A.5	0.001923
N	366	T366I	aCa	aTa	1	1	AD.2	0.000219
N	366	T366I	aCa	aTa	1	1	AY.111	0.000183
N	366	T366I	aCa	aTa	1	1	AY.113	0.000142
N	366	T366I	aCa	aTa	1	1	AY.114	0.000231
N	366	T366I	aCa	aTa	1	1	AY.120.1	0.000321
N	366	T366I	aCa	aTa	1	1	AY.120.2	0.001285
N	366	T366I	aCa	aTa	1	1	AY.14	0.000088
N	366	T366I	aCa	aTa	1	1	AY.15	0.002222
N	366	T366I	aCa	aTa	1	1	AY.35	0.000233
N	366	T366I	aCa	aTa	1	1	AY.4.5	0.000107
N	366	T366I	aCa	aTa	1	1	AY.46.1	0.001027
N	366	T366I	aCa	aTa	1	1	AY.46.4	0.000165
N	366	T366I	aCa	aTa	1	1	AY.5.3	0.000337
N	366	T366I	aCa	aTa	1	1	AY.52	0.000814
N	366	T366I	aCa	aTa	1	1	AY.53	0.000288
N	366	T366I	aCa	aTa	1	1	AY.55	0.000917
N	366	T366I	aCa	aTa	1	1	AY.58	0.000907
N	366	T366I	aCa	aTa	1	1	AY.62	0.000436
N	366	T366I	aCa	aTa	1	1	AY.68	0.000274
N	366	T366I	aCa	aTa	1	1	AY.70	0.000209
N	366	T366I	aCa	aTa	1	1	AY.72	0.001361
N	366	T366I	aCa	aTa	1	1	AY.73	0.000665
N	366	T366I	aCa	aTa	1	1	AY.76	0.004831
N	366	T366I	aCa	aTa	1	1	AY.79	0.001211
N	366	T366I	aCa	aTa	1	1	AY.9	0.000068
N	366	T366I	aCa	aTa	1	1	AY.91	0.00073
N	366	T366I	aCa	aTa	1	1	AY.95	0.000761
N	366	T366I	aCa	aTa	1	1	B.1.1.13	0.035714
N	366	T366I	aCa	aTa	1	1	B.1.1.138	0.006061
N	366	T366I	aCa	aTa	1	1	B.1.1.141	0.002012
N	366	T366I	aCa	aTa	1	1	B.1.1.180	0.010753
N	366	T366I	aCa	aTa	1	1	B.1.1.194	0.00495
N	366	T366I	aCa	aTa	1	1	B.1.1.207	0.001182
N	366	T366I	aCa	aTa	1	1	B.1.1.284	0.000107
N	366	T366I	aCa	aTa	1	1	B.1.1.294	0.001266
N	366	T366I	aCa	aTa	1	1	B.1.1.301	0.001179
N	366	T366I	aCa	aTa	1	1	B.1.1.302	0.002075
N	366	T366I	aCa	aTa	1	1	B.1.1.305	0.003861
N	366	T366I	aCa	aTa	1	1	B.1.1.319	0.017544
N	366	T366I	aCa	aTa	1	1	B.1.1.320	0.018182
N	366	T366I	aCa	aTa	1	1	B.1.1.396	0.045455
N	366	T366I	aCa	aTa	1	1	B.1.1.398	0.003226
N	366	T366I	aCa	aTa	1	1	B.1.1.406	0.006494
N	366	T366I	aCa	aTa	1	1	B.1.1.442	0.018519
N	366	T366I	aCa	aTa	1	1	B.1.1.464	0.001473
N	366	T366I	aCa	aTa	1	1	B.1.1.486	0.001577
N	366	T366I	aCa	aTa	1	1	B.1.1.487	0.005587
N	366	T366I	aCa	aTa	1	1	B.1.1.514	0.038462
N	366	T366I	aCa	aTa	1	1	B.1.1.90	0.1
N	366	T366I	aCa	aTa	1	1	B.1.134	0.005464
N	366	T366I	aCa	aTa	1	1	B.1.160.14	0.002119
N	366	T366I	aCa	aTa	1	1	B.1.160.26	0.002421
N	366	T366I	aCa	aTa	1	1	B.1.160.32	0.004292
N	366	T366I	aCa	aTa	1	1	B.1.177.33	0.001645
N	366	T366I	aCa	aTa	1	1	B.1.177.48	0.003125
N	366	T366I	aCa	aTa	1	1	B.1.177.54	0.000606
N	366	T366I	aCa	aTa	1	1	B.1.177.63	0.002703
N	366	T366I	aCa	aTa	1	1	B.1.177.70	0.005917
N	366	T366I	aCa	aTa	1	1	B.1.177.79	0.002342
N	366	T366I	aCa	aTa	1	1	B.1.177.8	0.000752
N	366	T366I	aCa	aTa	1	1	B.1.177.9	0.001332
N	366	T366I	aCa	aTa	1	1	B.1.199	0.004132
N	366	T366I	aCa	aTa	1	1	B.1.214.1	0.02
N	366	T366I	aCa	aTa	1	1	B.1.221	0.000071
N	366	T366I	aCa	aTa	1	1	B.1.221.3	0.000833
N	366	T366I	aCa	aTa	1	1	B.1.23	0.006061
N	366	T366I	aCa	aTa	1	1	B.1.240	0.000216
N	366	T366I	aCa	aTa	1	1	B.1.349	0.000715
N	366	T366I	aCa	aTa	1	1	B.1.355	0.011111
N	366	T366I	aCa	aTa	1	1	B.1.36.36	0.000602
N	366	T366I	aCa	aTa	1	1	B.1.36.39	0.002217
N	366	T366I	aCa	aTa	1	1	B.1.369	0.000285
N	366	T366I	aCa	aTa	1	1	B.1.370	0.008
N	366	T366I	aCa	aTa	1	1	B.1.371	0.001122
N	366	T366I	aCa	aTa	1	1	B.1.400	0.000429
N	366	T366I	aCa	aTa	1	1	B.1.409	0.000781
N	366	T366I	aCa	aTa	1	1	B.1.426	0.001009
N	366	T366I	aCa	aTa	1	1	B.1.470	0.001404
N	366	T366I	aCa	aTa	1	1	B.1.503	0.002488
N	366	T366I	aCa	aTa	1	1	B.1.533	0.009615
N	366	T366I	aCa	aTa	1	1	B.1.535	0.028571
N	366	T366I	aCa	aTa	1	1	B.1.564	0.000426
N	366	T366I	aCa	aTa	1	1	B.1.586	0.010989
N	366	T366I	aCa	aTa	1	1	B.1.597	0.00463
N	366	T366I	aCa	aTa	1	1	B.1.615	0.04
N	366	T366I	aCa	aTa	1	1	B.1.618	0.004032
N	366	T366I	aCa	aTa	1	1	B.1.619	0.000871
N	366	T366I	aCa	aTa	1	1	B.1.76	0.011364
N	366	T366I	aCa	aTa	1	1	B.1.9.4	0.006135
N	366	T366I	aCa	aTa	1	1	B.20	0.023256
N	366	T366I	aCa	aTa	1	1	B.6	0.00091
N	366	T366I	aCa	aTa	1	1	B.6.8	0.008264
N	366	T366I	aCa	aTa	1	1	C.1.2	0.004255
N	366	T366I	aCa	aTa	1	1	P.1.1	0.000318
N	366	T366I	aCa	aTa	1	1	P.1.16	0.000374
N	366	T366I	aCa	aTa	1	1	P.1.17	0.000162
N	366	T366I	aCa	aTa	1	1	P.1.4	0.000977
N	366	T366I	aCa	aTa	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.