CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 362 | T362I | nonsyn | aCa | aTa | 16445 | 16408 | 0.99775 | 29357-29359 | |
N | 362 | T362I | nonsyn | aCA | aTT | 16445 | 21 | 0.00127698 | 29357-29359 | |
N | 362 | T362I | nonsyn | aCA | aTC | 16445 | 16 | 0.00097294 | 29357-29359 |
Details of the mutation T362I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 362 | T362I | aCa | aTa | 16408 | 16445 | All | 0.003138 |
N | 362 | T362I | aCA | aTT | 21 | 16445 | All | 0.000004 |
N | 362 | T362I | aCA | aTC | 16 | 16445 | All | 0.000003 |
N | 362 | T362I | aCa | aTa | 2987 | 2987 | B.1.351 | 0.088793 |
N | 362 | T362I | aCa | aTa | 2348 | 2348 | B.1.617.2 | 0.008841 |
N | 362 | T362I | aCa | aTa | 1979 | 1979 | AY.107 | 0.922181 |
N | 362 | T362I | aCa | aTa | 1271 | 1271 | AY.26 | 0.035982 |
N | 362 | T362I | aCa | aTa | 1102 | 1102 | AY.4 | 0.001715 |
N | 362 | T362I | aCa | aTa | 1028 | 1029 | B.1.1.7 | 0.00092 |
N | 362 | T362I | aCA | aTC | 1 | 1029 | B.1.1.7 | 0.000001 |
N | 362 | T362I | aCa | aTa | 594 | 594 | AY.39.1 | 0.02353 |
N | 362 | T362I | aCa | aTa | 420 | 420 | AY.43 | 0.001861 |
N | 362 | T362I | aCa | aTa | 342 | 342 | B.1.36.26 | 0.977143 |
N | 362 | T362I | aCa | aTa | 257 | 257 | AY.44 | 0.001564 |
N | 362 | T362I | aCa | aTa | 254 | 254 | B.1.2 | 0.002237 |
N | 362 | T362I | aCa | aTa | 212 | 212 | AY.3 | 0.002109 |
N | 362 | T362I | aCa | aTa | 204 | 204 | AY.103 | 0.001267 |
N | 362 | T362I | aCa | aTa | 150 | 150 | AY.29 | 0.002366 |
N | 362 | T362I | aCa | aTa | 101 | 132 | B.1 | 0.000925 |
N | 362 | T362I | aCA | aTT | 18 | 132 | B.1 | 0.000165 |
N | 362 | T362I | aCA | aTC | 13 | 132 | B.1 | 0.000119 |
N | 362 | T362I | aCa | aTa | 129 | 129 | AY.25 | 0.000776 |
N | 362 | T362I | aCa | aTa | 129 | 129 | R.1 | 0.011611 |
N | 362 | T362I | aCa | aTa | 117 | 117 | B.1.1.420 | 0.117706 |
N | 362 | T362I | aCa | aTa | 115 | 115 | B.1.526 | 0.002703 |
N | 362 | T362I | aCa | aTa | 111 | 111 | B.1.221 | 0.007885 |
N | 362 | T362I | aCa | aTa | 95 | 95 | B.1.596 | 0.008278 |
N | 362 | T362I | aCa | aTa | 87 | 87 | P.1 | 0.001371 |
N | 362 | T362I | aCa | aTa | 84 | 85 | B.1.177 | 0.001106 |
N | 362 | T362I | aCA | aTT | 1 | 85 | B.1.177 | 0.000013 |
N | 362 | T362I | aCa | aTa | 83 | 83 | B.1.427 | 0.004191 |
N | 362 | T362I | aCa | aTa | 78 | 79 | B.1.1 | 0.001415 |
N | 362 | T362I | aCA | aTC | 1 | 79 | B.1.1 | 0.000018 |
N | 362 | T362I | aCa | aTa | 68 | 68 | AY.5 | 0.001404 |
N | 362 | T362I | aCa | aTa | 64 | 64 | AY.40 | 0.061716 |
N | 362 | T362I | aCa | aTa | 61 | 61 | B.1.160 | 0.001902 |
N | 362 | T362I | aCa | aTa | 56 | 56 | AY.119 | 0.001977 |
N | 362 | T362I | aCa | aTa | 50 | 50 | B.1.429 | 0.001176 |
N | 362 | T362I | aCa | aTa | 48 | 48 | B.1.1.519 | 0.001906 |
N | 362 | T362I | aCa | aTa | 46 | 46 | P.7 | 0.200873 |
N | 362 | T362I | aCa | aTa | 42 | 42 | AY.39 | 0.001038 |
N | 362 | T362I | aCa | aTa | 40 | 40 | AY.31 | 0.740741 |
N | 362 | T362I | aCa | aTa | 37 | 37 | B.1.1.284 | 0.003974 |
N | 362 | T362I | aCa | aTa | 37 | 37 | B.1.499 | 0.038866 |
N | 362 | T362I | aCa | aTa | 36 | 36 | AY.4.2 | 0.000781 |
N | 362 | T362I | aCa | aTa | 36 | 36 | B.1.1.408 | 1 |
N | 362 | T362I | aCa | aTa | 35 | 35 | B.1.1.371 | 0.364583 |
N | 362 | T362I | aCa | aTa | 35 | 35 | B.1.177.12 | 0.005309 |
N | 362 | T362I | aCa | aTa | 35 | 35 | B.1.375 | 0.028689 |
N | 362 | T362I | aCa | aTa | 31 | 31 | AY.13 | 0.00499 |
N | 362 | T362I | aCa | aTa | 30 | 30 | B.1.637 | 0.002192 |
N | 362 | T362I | aCa | aTa | 29 | 29 | AY.20 | 0.001127 |
N | 362 | T362I | aCa | aTa | 28 | 28 | AY.100 | 0.001288 |
N | 362 | T362I | aCa | aTa | 28 | 28 | AY.91 | 0.020453 |
N | 362 | T362I | aCa | aTa | 28 | 28 | B.1.214.2 | 0.016787 |
N | 362 | T362I | aCa | aTa | 26 | 26 | AY.54 | 0.002479 |
N | 362 | T362I | aCa | aTa | 26 | 26 | B.1.1.451 | 1 |
N | 362 | T362I | aCa | aTa | 25 | 25 | AY.102 | 0.000663 |
N | 362 | T362I | aCa | aTa | 24 | 24 | AY.118 | 0.001504 |
N | 362 | T362I | aCa | aTa | 23 | 23 | AY.27 | 0.001489 |
N | 362 | T362I | aCa | aTa | 20 | 20 | AY.120 | 0.000744 |
N | 362 | T362I | aCa | aTa | 20 | 20 | B.1.177.86 | 0.003669 |
N | 362 | T362I | aCa | aTa | 20 | 20 | B.1.631 | 0.06734 |
N | 362 | T362I | aCa | aTa | 20 | 20 | B.1.96 | 0.377358 |
N | 362 | T362I | aCa | aTa | 19 | 19 | B.1.525 | 0.00215 |
N | 362 | T362I | aCa | aTa | 19 | 19 | Q.3 | 0.002756 |
N | 362 | T362I | aCa | aTa | 18 | 18 | B.1.1.434 | 0.006274 |
N | 362 | T362I | aCa | aTa | 18 | 18 | B.1.177.80 | 0.034417 |
N | 362 | T362I | aCa | aTa | 18 | 18 | B.1.240 | 0.00388 |
N | 362 | T362I | aCa | aTa | 18 | 18 | B.1.36 | 0.002626 |
N | 362 | T362I | aCa | aTa | 18 | 18 | B.1.621 | 0.001593 |
N | 362 | T362I | aCa | aTa | 17 | 17 | B.1.494 | 0.586207 |
N | 362 | T362I | aCa | aTa | 16 | 16 | AY.30 | 0.006332 |
N | 362 | T362I | aCa | aTa | 16 | 16 | AY.37 | 0.005057 |
N | 362 | T362I | aCa | aTa | 15 | 15 | AY.23 | 0.001046 |
N | 362 | T362I | aCa | aTa | 15 | 15 | B.1.1.425 | 0.681818 |
N | 362 | T362I | aCa | aTa | 15 | 15 | B.1.258 | 0.000998 |
N | 362 | T362I | aCa | aTa | 14 | 14 | AA.1 | 0.101449 |
N | 362 | T362I | aCa | aTa | 14 | 14 | AY.117 | 0.001183 |
N | 362 | T362I | aCa | aTa | 14 | 14 | AY.33 | 0.000935 |
N | 362 | T362I | aCa | aTa | 13 | 14 | B.1.1.1 | 0.004247 |
N | 362 | T362I | aCA | aTT | 1 | 14 | B.1.1.1 | 0.000327 |
N | 362 | T362I | aCa | aTa | 14 | 14 | P.2 | 0.002613 |
N | 362 | T362I | aCa | aTa | 13 | 13 | AY.16.1 | 0.006109 |
N | 362 | T362I | aCa | aTa | 12 | 12 | AY.45 | 0.00146 |
N | 362 | T362I | aCa | aTa | 12 | 12 | AY.75.1 | 0.002164 |
N | 362 | T362I | aCa | aTa | 12 | 12 | B.1.311 | 0.003295 |
N | 362 | T362I | aCa | aTa | 12 | 12 | B.1.466.2 | 0.004695 |
N | 362 | T362I | aCa | aTa | 12 | 12 | B.1.617.1 | 0.001548 |
N | 362 | T362I | aCa | aTa | 11 | 11 | AY.113 | 0.001566 |
N | 362 | T362I | aCa | aTa | 11 | 11 | AY.47 | 0.000342 |
N | 362 | T362I | aCa | aTa | 11 | 11 | AY.9 | 0.000744 |
N | 362 | T362I | aCa | aTa | 11 | 11 | B.1.438.1 | 0.00118 |
N | 362 | T362I | aCa | aTa | 11 | 11 | C.37 | 0.001277 |
N | 362 | T362I | aCa | aTa | 10 | 10 | AY.16 | 0.003797 |
N | 362 | T362I | aCa | aTa | 10 | 10 | B.1.470 | 0.014045 |
N | 362 | T362I | aCa | aTa | 9 | 9 | AY.36 | 0.001334 |
N | 362 | T362I | aCa | aTa | 9 | 9 | AY.41 | 0.002646 |
N | 362 | T362I | aCa | aTa | 9 | 9 | AY.64 | 0.005357 |
N | 362 | T362I | aCa | aTa | 9 | 9 | AY.98 | 0.000711 |
N | 362 | T362I | aCa | aTa | 9 | 9 | AY.98.1 | 0.000436 |
N | 362 | T362I | aCa | aTa | 9 | 9 | B.1.1.518 | 0.056962 |
N | 362 | T362I | aCa | aTa | 9 | 9 | B.1.243 | 0.000626 |
N | 362 | T362I | aCa | aTa | 9 | 9 | B.1.351.5 | 0.005396 |
N | 362 | T362I | aCa | aTa | 8 | 8 | AY.67 | 0.003714 |
N | 362 | T362I | aCa | aTa | 8 | 8 | B.1.160.31 | 0.064516 |
N | 362 | T362I | aCa | aTa | 8 | 8 | C.36.3 | 0.004538 |
N | 362 | T362I | aCa | aTa | 7 | 7 | AY.3.1 | 0.000597 |
N | 362 | T362I | aCa | aTa | 7 | 7 | AY.4.5 | 0.000752 |
N | 362 | T362I | aCa | aTa | 7 | 7 | AY.59 | 0.003708 |
N | 362 | T362I | aCa | aTa | 7 | 7 | AY.70 | 0.00146 |
N | 362 | T362I | aCa | aTa | 7 | 7 | AY.84 | 0.003062 |
N | 362 | T362I | aCa | aTa | 7 | 7 | AY.9.2 | 0.000257 |
N | 362 | T362I | aCa | aTa | 7 | 7 | B.1.1.214 | 0.000388 |
N | 362 | T362I | aCa | aTa | 7 | 7 | B.1.469 | 0.025271 |
N | 362 | T362I | aCa | aTa | 6 | 6 | AY.114 | 0.001387 |
N | 362 | T362I | aCa | aTa | 6 | 6 | AY.121 | 0.000812 |
N | 362 | T362I | aCa | aTa | 6 | 6 | AY.46.6 | 0.000433 |
N | 362 | T362I | aCa | aTa | 6 | 6 | AY.5.3 | 0.002024 |
N | 362 | T362I | aCa | aTa | 6 | 6 | AY.58 | 0.005445 |
N | 362 | T362I | aCa | aTa | 6 | 6 | AY.61 | 0.000629 |
N | 362 | T362I | aCa | aTa | 6 | 6 | B | 0.000767 |
N | 362 | T362I | aCa | aTa | 6 | 6 | B.1.1.157 | 0.005479 |
N | 362 | T362I | aCa | aTa | 6 | 6 | B.1.177.20 | 0.009105 |
N | 362 | T362I | aCa | aTa | 6 | 6 | B.1.177.43 | 0.008863 |
N | 362 | T362I | aCa | aTa | 6 | 6 | B.1.628 | 0.002114 |
N | 362 | T362I | aCa | aTa | 5 | 5 | AY.106 | 0.001674 |
N | 362 | T362I | aCa | aTa | 5 | 5 | AY.111 | 0.000916 |
N | 362 | T362I | aCa | aTa | 5 | 5 | AY.12 | 0.00158 |
N | 362 | T362I | aCa | aTa | 5 | 5 | AY.42 | 0.000201 |
N | 362 | T362I | aCa | aTa | 5 | 5 | AY.53 | 0.001438 |
N | 362 | T362I | aCa | aTa | 5 | 5 | AY.55 | 0.004587 |
N | 362 | T362I | aCa | aTa | 5 | 5 | B.1.1.28 | 0.001556 |
N | 362 | T362I | aCa | aTa | 5 | 5 | B.1.110.3 | 0.003592 |
N | 362 | T362I | aCa | aTa | 5 | 5 | B.1.234 | 0.00066 |
N | 362 | T362I | aCa | aTa | 5 | 5 | B.1.36.8 | 0.005 |
N | 362 | T362I | aCa | aTa | 5 | 5 | B.1.382 | 0.044643 |
N | 362 | T362I | aCa | aTa | 5 | 5 | B.1.497 | 0.001574 |
N | 362 | T362I | aCa | aTa | 5 | 5 | Q.1 | 0.000632 |
N | 362 | T362I | aCa | aTa | 5 | 5 | Q.8 | 0.000825 |
N | 362 | T362I | aCa | aTa | 4 | 4 | A.23.1 | 0.002817 |
N | 362 | T362I | aCa | aTa | 4 | 4 | AY.104 | 0.007937 |
N | 362 | T362I | aCa | aTa | 4 | 4 | AY.34 | 0.000388 |
N | 362 | T362I | aCa | aTa | 4 | 4 | AY.5.4 | 0.001107 |
N | 362 | T362I | aCa | aTa | 4 | 4 | B.1.177.32 | 0.005398 |
N | 362 | T362I | aCa | aTa | 4 | 4 | B.1.177.76 | 0.009975 |
N | 362 | T362I | aCa | aTa | 4 | 4 | B.1.258.17 | 0.000416 |
N | 362 | T362I | aCa | aTa | 4 | 4 | B.1.561 | 0.001588 |
N | 362 | T362I | aCa | aTa | 4 | 4 | D.2 | 0.0003 |
N | 362 | T362I | aCa | aTa | 4 | 4 | P.1.14 | 0.000191 |
N | 362 | T362I | aCa | aTa | 4 | 4 | P.1.15 | 0.000929 |
N | 362 | T362I | aCa | aTa | 4 | 4 | P.1.7 | 0.001277 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.109 | 0.002219 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.110 | 0.000338 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.116 | 0.00086 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.19 | 0.003421 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.24 | 0.001293 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.38 | 0.001498 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.62 | 0.001307 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.73 | 0.001996 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.75 | 0.000168 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.86 | 0.00249 |
N | 362 | T362I | aCa | aTa | 3 | 3 | AY.99.2 | 0.000276 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.1.216 | 0.002671 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.1.311 | 0.001074 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.1.317 | 0.001235 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.177.60 | 0.000655 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.177.77 | 0.002179 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.210 | 0.006397 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.329 | 0.001823 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.346 | 0.003932 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.36.10 | 0.014354 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.36.17 | 0.001482 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.36.18 | 0.001261 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.36.29 | 0.001552 |
N | 362 | T362I | aCa | aTa | 2 | 3 | B.1.459 | 0.008163 |
N | 362 | T362I | aCA | aTT | 1 | 3 | B.1.459 | 0.004082 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.1.595 | 0.000783 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.3 | 0.002492 |
N | 362 | T362I | aCa | aTa | 3 | 3 | B.52 | 0.030303 |
N | 362 | T362I | aCa | aTa | 3 | 3 | P.1.12 | 0.001452 |
N | 362 | T362I | aCa | aTa | 2 | 2 | A.1 | 0.000564 |
N | 362 | T362I | aCa | aTa | 2 | 2 | A.2.5 | 0.000998 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.101 | 0.000981 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.120.2.1 | 0.000997 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.46 | 0.000208 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.6 | 0.000082 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.68 | 0.000547 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.69 | 0.000373 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.7.1 | 0.000225 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.71 | 0.00095 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.9.1 | 0.000167 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.92 | 0.000575 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.94 | 0.000885 |
N | 362 | T362I | aCa | aTa | 2 | 2 | AY.95 | 0.001522 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.1.153 | 0.002191 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.1.222 | 0.000408 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.1.294 | 0.002532 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.1.397 | 0.004505 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.1.432 | 0.002532 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.1.50 | 0.001358 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.111 | 0.00235 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.126 | 0.002551 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.128 | 0.001271 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.170 | 0.008621 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.177.52 | 0.003515 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.177.56 | 0.001335 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.177.58 | 0.002663 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.177.79 | 0.004684 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.214 | 0.007326 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.241 | 0.001623 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.369 | 0.00057 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.398 | 0.005952 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.411 | 0.007407 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.428 | 0.002041 |
N | 362 | T362I | aCA | aTC | 1 | 2 | B.1.437 | 0.020833 |
N | 362 | T362I | aCa | aTa | 1 | 2 | B.1.437 | 0.020833 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.456 | 0.006536 |
N | 362 | T362I | aCa | aTa | 2 | 2 | B.1.601 | 0.060606 |
N | 362 | T362I | aCa | aTa | 2 | 2 | C.26 | 0.014706 |
N | 362 | T362I | aCa | aTa | 2 | 2 | S.1 | 0.009901 |
N | 362 | T362I | aCa | aTa | 1 | 1 | A | 0.000387 |
N | 362 | T362I | aCa | aTa | 1 | 1 | A.29 | 0.005319 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.105 | 0.000643 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.108 | 0.001103 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.116.1 | 0.000311 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.14 | 0.000088 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.23.1 | 0.000417 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.29.1 | 0.000221 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.32 | 0.000532 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.4.4 | 0.000409 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.49 | 0.003195 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.51 | 0.000909 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.52 | 0.000814 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.63 | 0.000387 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.65 | 0.000533 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.72 | 0.001361 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.78 | 0.001541 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.87 | 0.000833 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.88 | 0.000884 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.90 | 0.000684 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.99 | 0.001049 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AY.99.1 | 0.001553 |
N | 362 | T362I | aCa | aTa | 1 | 1 | AZ.2 | 0.000821 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.115 | 0.008929 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.132 | 0.014925 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.152 | 0.04 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.176 | 0.000439 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.192 | 0.002309 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.200 | 0.007463 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.217 | 0.003636 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.220 | 0.001859 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.225 | 0.007194 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.273 | 0.006757 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.308 | 0.011765 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.337 | 0.003597 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.351 | 0.002793 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.366 | 0.015873 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.37 | 0.000193 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.374 | 0.002375 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.376 | 0.005952 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.380 | 0.009804 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.381 | 0.04 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.1.5 | 0.008333 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.14 | 0.017544 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.160.14 | 0.002119 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.177.15 | 0.000631 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.177.21 | 0.000076 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.177.45 | 0.000381 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.177.6 | 0.000977 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.177.81 | 0.000189 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.195 | 0.005025 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.232 | 0.000537 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.235 | 0.002519 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.239 | 0.001221 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.258.14 | 0.00098 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.260 | 0.003344 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.284 | 0.013158 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.289 | 0.00266 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.319 | 0.003049 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.351.1 | 0.038462 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.356 | 0.001727 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.36.34 | 0.021277 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.36.9 | 0.003215 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.361 | 0.001289 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.367 | 0.000792 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.415 | 0.014286 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.462 | 0.007246 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.471 | 0.002732 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.527 | 0.003704 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.535 | 0.028571 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.599 | 0.00365 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.609 | 0.000479 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.78 | 0.008547 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.1.9 | 0.006173 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.4 | 0.002208 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.6.6 | 0.000889 |
N | 362 | T362I | aCa | aTa | 1 | 1 | B.60 | 0.015873 |
N | 362 | T362I | aCa | aTa | 1 | 1 | P.1.16 | 0.000374 |
N | 362 | T362I | aCa | aTa | 1 | 1 | P.1.17 | 0.000162 |
N | 362 | T362I | aCa | aTa | 1 | 1 | P.1.2 | 0.001156 |
N | 362 | T362I | aCa | aTa | 1 | 1 | P.3 | 0.001595 |
N | 362 | T362I | aCa | aTa | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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