CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = T334I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	334	T334I		nonsyn	aCa	aTa	5928	5928	1	29273-29275

Details of the mutation T334I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	334	T334I	aCa	aTa	5928	5928	All	0.001134
N	334	T334I	aCa	aTa	1668	1668	B.1.1.7	0.001493
N	334	T334I	aCa	aTa	503	503	AY.4	0.000783
N	334	T334I	aCa	aTa	280	280	B.1.258.4	0.965517
N	334	T334I	aCa	aTa	226	226	B.1.177	0.002976
N	334	T334I	aCa	aTa	206	206	B.1.617.2	0.000776
N	334	T334I	aCa	aTa	196	196	AY.25	0.001179
N	334	T334I	aCa	aTa	177	177	AY.43	0.000784
N	334	T334I	aCa	aTa	163	163	B.1.2	0.001435
N	334	T334I	aCa	aTa	139	139	B.1.177.15	0.087697
N	334	T334I	aCa	aTa	130	130	B.1.1.214	0.007209
N	334	T334I	aCa	aTa	114	114	B.1.258.5	1
N	334	T334I	aCa	aTa	96	96	B.1	0.000879
N	334	T334I	aCa	aTa	91	91	AY.119	0.003213
N	334	T334I	aCa	aTa	87	87	AY.103	0.00054
N	334	T334I	aCa	aTa	82	82	B.1.160	0.002557
N	334	T334I	aCa	aTa	78	78	B.1.258	0.005191
N	334	T334I	aCa	aTa	69	69	P.1	0.001087
N	334	T334I	aCa	aTa	63	63	B.1.177.7	0.010386
N	334	T334I	aCa	aTa	62	62	AY.44	0.000377
N	334	T334I	aCa	aTa	52	52	B.1.351	0.001546
N	334	T334I	aCa	aTa	50	50	R.1	0.0045
N	334	T334I	aCa	aTa	47	47	B.1.1	0.000853
N	334	T334I	aCa	aTa	42	42	B.1.258.23	1
N	334	T334I	aCa	aTa	42	42	B.1.637	0.003069
N	334	T334I	aCa	aTa	41	41	AY.3	0.000408
N	334	T334I	aCa	aTa	38	38	B.1.1.228	0.115854
N	334	T334I	aCa	aTa	35	35	AY.53	0.010063
N	334	T334I	aCa	aTa	27	27	AY.46.2	0.017154
N	334	T334I	aCa	aTa	26	26	B.1.346	0.034076
N	334	T334I	aCa	aTa	25	25	B.1.234	0.003299
N	334	T334I	aCa	aTa	25	25	B.1.427	0.001262
N	334	T334I	aCa	aTa	24	24	AY.75	0.001345
N	334	T334I	aCa	aTa	22	22	AY.5	0.000454
N	334	T334I	aCa	aTa	20	20	B.1.177.4	0.004221
N	334	T334I	aCa	aTa	20	20	B.1.623	0.01073
N	334	T334I	aCa	aTa	19	19	AY.102	0.000504
N	334	T334I	aCa	aTa	19	19	B.1.596	0.001656
N	334	T334I	aCa	aTa	17	17	B.1.1.306	0.007453
N	334	T334I	aCa	aTa	17	17	B.1.1.416	0.015385
N	334	T334I	aCa	aTa	17	17	B.1.429	0.0004
N	334	T334I	aCa	aTa	17	17	B.1.438.1	0.001823
N	334	T334I	aCa	aTa	16	16	AY.23	0.001116
N	334	T334I	aCa	aTa	16	16	AY.4.2	0.000347
N	334	T334I	aCa	aTa	16	16	AY.5.3	0.005398
N	334	T334I	aCa	aTa	16	16	B.1.1.222	0.003264
N	334	T334I	aCa	aTa	16	16	B.1.400	0.006864
N	334	T334I	aCa	aTa	14	14	B.1.1.519	0.000556
N	334	T334I	aCa	aTa	14	14	B.1.311	0.003844
N	334	T334I	aCa	aTa	14	14	P.1.14	0.000669
N	334	T334I	aCa	aTa	14	14	P.2	0.002613
N	334	T334I	aCa	aTa	13	13	AY.100	0.000598
N	334	T334I	aCa	aTa	13	13	AY.46	0.001353
N	334	T334I	aCa	aTa	13	13	AY.47	0.000404
N	334	T334I	aCa	aTa	12	12	AY.39	0.000297
N	334	T334I	aCa	aTa	12	12	B.1.177.86	0.002201
N	334	T334I	aCa	aTa	12	12	B.1.36	0.001751
N	334	T334I	aCa	aTa	12	12	P.1.12	0.005808
N	334	T334I	aCa	aTa	11	11	AY.29	0.000174
N	334	T334I	aCa	aTa	11	11	AY.98.1	0.000533
N	334	T334I	aCa	aTa	11	11	B.1.526	0.000259
N	334	T334I	aCa	aTa	11	11	D.2	0.000825
N	334	T334I	aCa	aTa	10	10	AY.98	0.00079
N	334	T334I	aCa	aTa	10	10	B.1.1.216	0.008905
N	334	T334I	aCa	aTa	10	10	B.1.575	0.003034
N	334	T334I	aCa	aTa	10	10	B.28	0.032787
N	334	T334I	aCa	aTa	9	9	AY.26	0.000255
N	334	T334I	aCa	aTa	9	9	AY.34	0.000873
N	334	T334I	aCa	aTa	9	9	AY.36	0.001334
N	334	T334I	aCa	aTa	9	9	B.1.1.434	0.003137
N	334	T334I	aCa	aTa	9	9	B.1.221	0.000639
N	334	T334I	aCa	aTa	9	9	C.36	0.008197
N	334	T334I	aCa	aTa	9	9	Q.8	0.001484
N	334	T334I	aCa	aTa	8	8	AY.14	0.000704
N	334	T334I	aCa	aTa	8	8	B.1.1.136	0.170213
N	334	T334I	aCa	aTa	8	8	B.1.1.369	0.00357
N	334	T334I	aCa	aTa	8	8	B.1.1.523	0.0125
N	334	T334I	aCa	aTa	8	8	B.1.243	0.000557
N	334	T334I	aCa	aTa	7	7	AY.118	0.000439
N	334	T334I	aCa	aTa	7	7	AY.54	0.000667
N	334	T334I	aCa	aTa	7	7	AZ.2	0.005747
N	334	T334I	aCa	aTa	7	7	B	0.000895
N	334	T334I	aCa	aTa	7	7	B.1.1.174	0.023649
N	334	T334I	aCa	aTa	7	7	C.37	0.000812
N	334	T334I	aCa	aTa	7	7	Q.1	0.000884
N	334	T334I	aCa	aTa	6	6	AY.116.1	0.001869
N	334	T334I	aCa	aTa	6	6	AY.120	0.000223
N	334	T334I	aCa	aTa	6	6	AY.20	0.000233
N	334	T334I	aCa	aTa	6	6	AY.5.4	0.00166
N	334	T334I	aCa	aTa	6	6	B.1.389	0.006012
N	334	T334I	aCa	aTa	6	6	B.1.617.1	0.000774
N	334	T334I	aCa	aTa	6	6	B.1.621	0.000531
N	334	T334I	aCa	aTa	5	5	AY.4.5	0.000537
N	334	T334I	aCa	aTa	5	5	AY.9	0.000338
N	334	T334I	aCa	aTa	5	5	AY.9.2	0.000184
N	334	T334I	aCa	aTa	5	5	B.1.1.207	0.00591
N	334	T334I	aCa	aTa	5	5	B.1.396	0.003529
N	334	T334I	aCa	aTa	5	5	B.1.405	0.061728
N	334	T334I	aCa	aTa	5	5	B.1.525	0.000566
N	334	T334I	aCa	aTa	4	4	AE.8	0.001956
N	334	T334I	aCa	aTa	4	4	AY.27	0.000259
N	334	T334I	aCa	aTa	4	4	AY.39.1	0.000158
N	334	T334I	aCa	aTa	4	4	AY.4.3	0.003367
N	334	T334I	aCa	aTa	4	4	AY.46.4	0.000658
N	334	T334I	aCa	aTa	4	4	AY.99.2	0.000369
N	334	T334I	aCa	aTa	4	4	B.1.1.1	0.001307
N	334	T334I	aCa	aTa	4	4	B.1.1.284	0.00043
N	334	T334I	aCa	aTa	4	4	B.1.1.286	0.011594
N	334	T334I	aCa	aTa	4	4	B.1.1.317	0.001647
N	334	T334I	aCa	aTa	4	4	B.1.1.432	0.005063
N	334	T334I	aCa	aTa	4	4	B.1.177.20	0.00607
N	334	T334I	aCa	aTa	4	4	B.1.36.18	0.001681
N	334	T334I	aCa	aTa	4	4	B.1.466.2	0.001565
N	334	T334I	aCa	aTa	4	4	B.1.523	0.009804
N	334	T334I	aCa	aTa	4	4	P.1.10	0.001078
N	334	T334I	aCa	aTa	3	3	A.2.5	0.001497
N	334	T334I	aCa	aTa	3	3	AY.120.1	0.000963
N	334	T334I	aCa	aTa	3	3	AY.121	0.000406
N	334	T334I	aCa	aTa	3	3	AY.4.1	0.002212
N	334	T334I	aCa	aTa	3	3	AY.42	0.000121
N	334	T334I	aCa	aTa	3	3	AY.46.6	0.000217
N	334	T334I	aCa	aTa	3	3	AY.73	0.001996
N	334	T334I	aCa	aTa	3	3	AY.93	0.000819
N	334	T334I	aCa	aTa	3	3	B.1.1.277	0.002276
N	334	T334I	aCa	aTa	3	3	B.1.1.486	0.004732
N	334	T334I	aCa	aTa	3	3	B.1.1.70	0.001023
N	334	T334I	aCa	aTa	3	3	B.1.177.21	0.000229
N	334	T334I	aCa	aTa	3	3	B.1.199	0.012397
N	334	T334I	aCa	aTa	3	3	B.1.329	0.001823
N	334	T334I	aCa	aTa	3	3	B.1.351.2	0.000908
N	334	T334I	aCa	aTa	3	3	B.1.480	0.007463
N	334	T334I	aCa	aTa	3	3	B.1.509	0.002597
N	334	T334I	aCa	aTa	3	3	B.1.577	0.002062
N	334	T334I	aCa	aTa	3	3	B.1.609	0.001438
N	334	T334I	aCa	aTa	3	3	Q.4	0.001364
N	334	T334I	aCa	aTa	2	2	A	0.000774
N	334	T334I	aCa	aTa	2	2	A.1	0.000564
N	334	T334I	aCa	aTa	2	2	AY.109	0.001479
N	334	T334I	aCa	aTa	2	2	AY.111	0.000366
N	334	T334I	aCa	aTa	2	2	AY.113	0.000285
N	334	T334I	aCa	aTa	2	2	AY.13	0.000322
N	334	T334I	aCa	aTa	2	2	AY.2	0.000712
N	334	T334I	aCa	aTa	2	2	AY.3.1	0.000171
N	334	T334I	aCa	aTa	2	2	AY.35	0.000466
N	334	T334I	aCa	aTa	2	2	AY.45	0.000243
N	334	T334I	aCa	aTa	2	2	AY.51	0.001818
N	334	T334I	aCa	aTa	2	2	AY.6	0.000082
N	334	T334I	aCa	aTa	2	2	AY.61	0.00021
N	334	T334I	aCa	aTa	2	2	AY.68	0.000547
N	334	T334I	aCa	aTa	2	2	AY.7.1	0.000225
N	334	T334I	aCa	aTa	2	2	AY.71	0.00095
N	334	T334I	aCa	aTa	2	2	AY.75.1	0.000361
N	334	T334I	aCa	aTa	2	2	AY.80	0.002257
N	334	T334I	aCa	aTa	2	2	AY.85	0.000854
N	334	T334I	aCa	aTa	2	2	AY.9.1	0.000167
N	334	T334I	aCa	aTa	2	2	B.1.1.221	0.020202
N	334	T334I	aCa	aTa	2	2	B.1.1.229	0.011494
N	334	T334I	aCa	aTa	2	2	B.1.1.25	0.001137
N	334	T334I	aCa	aTa	2	2	B.1.1.28	0.000622
N	334	T334I	aCa	aTa	2	2	B.1.1.289	0.004167
N	334	T334I	aCa	aTa	2	2	B.1.1.311	0.000716
N	334	T334I	aCa	aTa	2	2	B.1.1.37	0.000386
N	334	T334I	aCa	aTa	2	2	B.1.1.39	0.001019
N	334	T334I	aCa	aTa	2	2	B.1.1.50	0.001358
N	334	T334I	aCa	aTa	2	2	B.1.108	0.011628
N	334	T334I	aCa	aTa	2	2	B.1.111	0.00235
N	334	T334I	aCa	aTa	2	2	B.1.177.43	0.002954
N	334	T334I	aCa	aTa	2	2	B.1.214.2	0.001199
N	334	T334I	aCa	aTa	2	2	B.1.351.3	0.001753
N	334	T334I	aCa	aTa	2	2	B.1.36.19	0.018519
N	334	T334I	aCa	aTa	2	2	B.1.36.31	0.003503
N	334	T334I	aCa	aTa	2	2	B.1.36.35	0.005208
N	334	T334I	aCa	aTa	2	2	B.1.409	0.001563
N	334	T334I	aCa	aTa	2	2	B.1.628	0.000705
N	334	T334I	aCa	aTa	2	2	C.30	0.003454
N	334	T334I	aCa	aTa	2	2	P.1.15	0.000465
N	334	T334I	aCa	aTa	2	2	P.1.6	0.003891
N	334	T334I	aCa	aTa	2	2	Q.3	0.00029
N	334	T334I	aCa	aTa	1	1		0.055556
N	334	T334I	aCa	aTa	1	1	A.2.5.1	0.004808
N	334	T334I	aCa	aTa	1	1	A.2.5.2	0.001572
N	334	T334I	aCa	aTa	1	1	A.23.1	0.000704
N	334	T334I	aCa	aTa	1	1	A.5	0.001923
N	334	T334I	aCa	aTa	1	1	AA.1	0.007246
N	334	T334I	aCa	aTa	1	1	AA.7	0.009174
N	334	T334I	aCa	aTa	1	1	AB.1	0.008197
N	334	T334I	aCa	aTa	1	1	AM.4	0.003571
N	334	T334I	aCa	aTa	1	1	AY.1	0.000396
N	334	T334I	aCa	aTa	1	1	AY.114	0.000231
N	334	T334I	aCa	aTa	1	1	AY.117	0.000085
N	334	T334I	aCa	aTa	1	1	AY.16	0.00038
N	334	T334I	aCa	aTa	1	1	AY.23.1	0.000417
N	334	T334I	aCa	aTa	1	1	AY.30	0.000396
N	334	T334I	aCa	aTa	1	1	AY.33	0.000067
N	334	T334I	aCa	aTa	1	1	AY.34.1	0.00051
N	334	T334I	aCa	aTa	1	1	AY.37	0.000316
N	334	T334I	aCa	aTa	1	1	AY.38	0.000499
N	334	T334I	aCa	aTa	1	1	AY.39.2	0.001541
N	334	T334I	aCa	aTa	1	1	AY.40	0.000964
N	334	T334I	aCa	aTa	1	1	AY.46.3	0.000934
N	334	T334I	aCa	aTa	1	1	AY.46.5	0.000198
N	334	T334I	aCa	aTa	1	1	AY.57	0.000656
N	334	T334I	aCa	aTa	1	1	AY.59	0.00053
N	334	T334I	aCa	aTa	1	1	AY.63	0.000387
N	334	T334I	aCa	aTa	1	1	AY.67	0.000464
N	334	T334I	aCa	aTa	1	1	AY.69	0.000187
N	334	T334I	aCa	aTa	1	1	AY.7.2	0.000559
N	334	T334I	aCa	aTa	1	1	AY.79	0.001211
N	334	T334I	aCa	aTa	1	1	AY.84	0.000437
N	334	T334I	aCa	aTa	1	1	AY.86	0.00083
N	334	T334I	aCa	aTa	1	1	AY.88	0.000884
N	334	T334I	aCa	aTa	1	1	AY.97	0.001701
N	334	T334I	aCa	aTa	1	1	AZ.1	0.000867
N	334	T334I	aCa	aTa	1	1	B.1.1.176	0.000439
N	334	T334I	aCa	aTa	1	1	B.1.1.241	0.00207
N	334	T334I	aCa	aTa	1	1	B.1.1.291	0.000742
N	334	T334I	aCa	aTa	1	1	B.1.1.294	0.001266
N	334	T334I	aCa	aTa	1	1	B.1.1.312	0.001912
N	334	T334I	aCa	aTa	1	1	B.1.1.335	0.012987
N	334	T334I	aCa	aTa	1	1	B.1.1.356	0.008547
N	334	T334I	aCa	aTa	1	1	B.1.1.370	0.012658
N	334	T334I	aCa	aTa	1	1	B.1.1.398	0.003226
N	334	T334I	aCa	aTa	1	1	B.1.1.407	0.041667
N	334	T334I	aCa	aTa	1	1	B.1.1.464	0.001473
N	334	T334I	aCa	aTa	1	1	B.1.1.487	0.005587
N	334	T334I	aCa	aTa	1	1	B.1.1.525	0.005464
N	334	T334I	aCa	aTa	1	1	B.1.13	0.002375
N	334	T334I	aCa	aTa	1	1	B.1.146	0.004237
N	334	T334I	aCa	aTa	1	1	B.1.157	0.002985
N	334	T334I	aCa	aTa	1	1	B.1.160.16	0.000929
N	334	T334I	aCa	aTa	1	1	B.1.160.29	0.004219
N	334	T334I	aCa	aTa	1	1	B.1.160.30	0.002976
N	334	T334I	aCa	aTa	1	1	B.1.166	0.008475
N	334	T334I	aCa	aTa	1	1	B.1.177.23	0.003236
N	334	T334I	aCa	aTa	1	1	B.1.177.30	0.002513
N	334	T334I	aCa	aTa	1	1	B.1.177.36	0.016129
N	334	T334I	aCa	aTa	1	1	B.1.177.44	0.000519
N	334	T334I	aCa	aTa	1	1	B.1.177.45	0.000381
N	334	T334I	aCa	aTa	1	1	B.1.177.48	0.003125
N	334	T334I	aCa	aTa	1	1	B.1.177.63	0.002703
N	334	T334I	aCa	aTa	1	1	B.1.177.69	0.001484
N	334	T334I	aCa	aTa	1	1	B.1.177.75	0.001041
N	334	T334I	aCa	aTa	1	1	B.1.177.81	0.000189
N	334	T334I	aCa	aTa	1	1	B.1.177.85	0.005435
N	334	T334I	aCa	aTa	1	1	B.1.177.87	0.000728
N	334	T334I	aCa	aTa	1	1	B.1.213	0.014925
N	334	T334I	aCa	aTa	1	1	B.1.241	0.000812
N	334	T334I	aCa	aTa	1	1	B.1.258.17	0.000104
N	334	T334I	aCa	aTa	1	1	B.1.258.19	0.007092
N	334	T334I	aCa	aTa	1	1	B.1.293	0.0125
N	334	T334I	aCa	aTa	1	1	B.1.309	0.047619
N	334	T334I	aCa	aTa	1	1	B.1.336	0.002439
N	334	T334I	aCa	aTa	1	1	B.1.36.27	0.000763
N	334	T334I	aCa	aTa	1	1	B.1.36.29	0.000517
N	334	T334I	aCa	aTa	1	1	B.1.36.38	0.001642
N	334	T334I	aCa	aTa	1	1	B.1.369	0.000285
N	334	T334I	aCa	aTa	1	1	B.1.379	0.017241
N	334	T334I	aCa	aTa	1	1	B.1.397	0.004854
N	334	T334I	aCa	aTa	1	1	B.1.398	0.002976
N	334	T334I	aCa	aTa	1	1	B.1.406	0.006061
N	334	T334I	aCa	aTa	1	1	B.1.416.1	0.001563
N	334	T334I	aCa	aTa	1	1	B.1.426	0.001009
N	334	T334I	aCa	aTa	1	1	B.1.470	0.001404
N	334	T334I	aCa	aTa	1	1	B.1.530	0.007143
N	334	T334I	aCa	aTa	1	1	B.1.541	0.004425
N	334	T334I	aCa	aTa	1	1	B.1.551	0.00129
N	334	T334I	aCa	aTa	1	1	B.1.556	0.007519
N	334	T334I	aCa	aTa	1	1	B.1.560	0.00463
N	334	T334I	aCa	aTa	1	1	B.1.561	0.000397
N	334	T334I	aCa	aTa	1	1	B.1.566	0.019231
N	334	T334I	aCa	aTa	1	1	B.1.576	0.000907
N	334	T334I	aCa	aTa	1	1	B.1.591	0.010638
N	334	T334I	aCa	aTa	1	1	B.1.595	0.000261
N	334	T334I	aCa	aTa	1	1	B.1.618	0.004032
N	334	T334I	aCa	aTa	1	1	B.1.625	0.002353
N	334	T334I	aCa	aTa	1	1	B.1.8	0.001972
N	334	T334I	aCa	aTa	1	1	B.1.88.1	0.004808
N	334	T334I	aCa	aTa	1	1	B.1.93	0.000934
N	334	T334I	aCa	aTa	1	1	B.1.94	0.027027
N	334	T334I	aCa	aTa	1	1	B.3	0.000831
N	334	T334I	aCa	aTa	1	1	B.31	0.003731
N	334	T334I	aCa	aTa	1	1	B.6.6	0.000889
N	334	T334I	aCa	aTa	1	1	C.36.3	0.000567
N	334	T334I	aCa	aTa	1	1	P.1.17	0.000162
N	334	T334I	aCa	aTa	1	1	P.1.2	0.001156
N	334	T334I	aCa	aTa	1	1	P.1.7	0.000319
N	334	T334I	aCa	aTa	1	1	P.1.8	0.004785
N	334	T334I	aCa	aTa	1	1	Q.2	0.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.